Ggra8465.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8465.t1
Unique NameGgra8465.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length973
Homology
BLAST of Ggra8465.t1 vs. uniprot
Match: A0A2V3ITC8 (Vam6/Vps39-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITC8_9FLOR)

HSP 1 Score: 1444 bits (3739), Expect = 0.000e+0
Identity = 758/970 (78.14%), Postives = 850/970 (87.63%), Query Frame = 0
Query:    1 MATLIRCRPLPNIDSRGARILCATTVPDTGCIIAATDAPELVCGEEQRISTEAYAREIACVRYATFASNSLPEQKAVVLALINGVGLRLHSFPNLERIEGELADELQAMSNNAQMFSVDSLGSDLVAESFRVALAREATVVLLDINPVRENVTVLGEYVLPERIDSVAFSEMTIVVSTSAVHHLLRISRGGVLAVAATVNRSENHKRQSSAADGGAAMLSLIGGFFWRRGLSAVGESPIAFALPENKWLLTVDQELVTYSSFGEKLEEMENVFKSRSGMEISDSI-ASFSTKEESSSQLARGKERSNSMSSLASVATGITNRTVLDEALAKRAEKPPQSTIFSPPFVLSMSLNNEVMAFAANGSVQGVMEQVKLFEDDEADPKKNLEQGAKLLICRYGRNLAVVFWPGGRIVALELVDDLETLIEEKEAADELRLALALVPAEQIDRMLSLRRRLAVEARNQDWHDAAIYHMQNVVNMVIKREGNDPELISEAVELRGDSNSTWQSDDVIATMWADFLFRLRRQIMLPSKADVDVLETLCRADESASRIRSLLQSKHGIPLSVGESLITGKTSILRQEEQIEALVALYTSLSVHEKALTLLENSEMANNFNGVSSYLSTIMHPSDNPDVYFTHLRWLAQEAHEEAQGREKLQDLIQKLVRQVKDSDDLLGRTFEVLVEEADDLLKEVVDEVCGLILDDSGDSITEADTNNFEHTENFSADVIALALLAGMARANSTSKDEVFESLRSTFGTKILYRPDATYHSYTLLQALQKPEYKALGLREELAFLLGRQGRHEAAADELAAEVNLAPQEALTRLVRMSPGSDRATAVESLVAAYLRVSAQGRVMRIQDASDVLKCSAGSLEIEKLLLDGRCSDESLSLSQMFPFLEAALVSGNERHRLGEMLRAMKKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIGTLVFVAYPDGSVAHYACHISRDNQELN 969
            MA+LIRC+PLPN DSRGAR+LCAT VPDTGCI+AAT+  EL+CGEEQR+ST+++AR +ACVRYA+F  +S PEQKAVVLALINGVGLRL+SFP LERIEG LADEL+ MSN A +FSVDSLGSDLVAESFRVALAREATV LLDIN VRE VTVLGEY+LP+++ +VAFSE TIV STS+ H+LLRISRGGVLAVAATV R++  +RQS+AADGG A+LSLIGG FWRR +S  G+S +AFALP+N+WLLTVDQELVTYSSFGEKLEEMENVFKSRSGM ISDS+ +S  T E S S+     +RSNS+SSL SVATGIT+RTVLDEALA RAEKP QST FS PFVLS+S  NEV+AFAANGSVQGVMEQVKLFEDD+  P    E G KL+  RYGR LA VFWP GRIVALELVDDLE+LIEEKEAA+ELRLALALVPAEQ+ RML LRR LA EAR+QDWHDAAI HMQNVVN+V+K+EG DP+L+SEAVELRG SN +WQ+DDV ATMWADFLFRLRRQIM PSKADV VLETLCRADESASRIRSLLQSKHGIPLSVGES ITGK S+LR+EE+IEALV LYTSLSVHEKALTLLENSEM+N F+GVS YLS  M PSD+P+VYF+HLRWL +EA  EAQGR KLQ LIQ+LVR+VKDSDDLLGR+FEVLVEEADD+L ++V EVCGLI +D  + +TEA  +NFE  E FS DVI LALLAGMA+A++    +VF+ LRS FGT ILYRP+ATYHSYTLLQALQKPEY+ALGLREELAFLLGRQGRHEAAADELAAEVNL PQEAL+RL+RMSP S R TAVESLVAA+LRVS QGR MRI+DAS +LKC AG+L+I+KLLLDG CSDESLSLS MFPFLEAALVSGNERHRL EMLRA++KSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRI T  FVAYPDGSVAHYACH+SRDNQE +
Sbjct:    1 MASLIRCQPLPNFDSRGARVLCATAVPDTGCIVAATETRELICGEEQRVSTDSFARAVACVRYASFTLDSFPEQKAVVLALINGVGLRLYSFPTLERIEGALADELRNMSNTAHIFSVDSLGSDLVAESFRVALAREATVFLLDINLVREKVTVLGEYILPDKVAAVAFSETTIVASTSSTHYLLRISRGGVLAVAATVERTDRPRRQSTAADGGTAVLSLIGGLFWRREVSPSGDSSVAFALPDNRWLLTVDQELVTYSSFGEKLEEMENVFKSRSGMNISDSVTSSLKTSEVSKSRRMLANQRSNSISSLGSVATGITHRTVLDEALAARAEKPSQSTTFSSPFVLSVSSENEVVAFAANGSVQGVMEQVKLFEDDQKKP----EPGPKLIPYRYGRRLAAVFWPSGRIVALELVDDLESLIEEKEAANELRLALALVPAEQLSRMLRLRRLLAKEARSQDWHDAAICHMQNVVNIVVKQEGTDPDLVSEAVELRGTSNESWQADDVTATMWADFLFRLRRQIMRPSKADVYVLETLCRADESASRIRSLLQSKHGIPLSVGESQITGKGSVLREEERIEALVELYTSLSVHEKALTLLENSEMSNKFDGVSGYLSNSMRPSDDPEVYFSHLRWLCREARGEAQGRPKLQMLIQRLVREVKDSDDLLGRSFEVLVEEADDVLSDIVVEVCGLISEDRSEDVTEAKESNFESNERFSGDVIGLALLAGMAKADALENTKVFQDLRSAFGTSILYRPEATYHSYTLLQALQKPEYQALGLREELAFLLGRQGRHEAAADELAAEVNLGPQEALSRLIRMSPASGRVTAVESLVAAFLRVSGQGRAMRIEDASKLLKCCAGTLDIDKLLLDGHCSDESLSLSNMFPFLEAALVSGNERHRLAEMLRAVRKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIATHAFVAYPDGSVAHYACHVSRDNQETS 966          
BLAST of Ggra8465.t1 vs. uniprot
Match: R7Q6G4 (Vps39_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6G4_CHOCR)

HSP 1 Score: 857 bits (2215), Expect = 1.950e-300
Identity = 458/748 (61.23%), Postives = 571/748 (76.34%), Query Frame = 0
Query:  218 MLSLIGGFFWRRGLSAVGESPIAFALPENKWLLTVDQELVTYSSFGEKLEEMENVFKSRSGMEISDSIASFSTKEESSSQLARGKERSNSMSSLASVATGITNRTVLDEALAKRAEKPPQSTIFSPPFVLSMSLNNEVMAFAANGSVQGVMEQVKLFEDDEADPKKNLEQGAKLLICRYGRNLAVVFWPGGRIVALELVDDLETLIEEKEAADELRLALALVPAEQIDRMLSLRRRLAVEARNQDWHDAAIYHMQNVVNMVIKREG-NDPELISEAVELRGDSNSTWQSDDVIATMWADFLFRLRRQIMLPSKADVDVLETLCRADESASRIRSLLQSKHGIPLSVGESLITGKTSILRQEEQIEALVALYTSLSVHEKALTLLENSEMANNFNGVSSYLSTIMHPSDNPDVYFTHLRWLAQEAHEEAQGREKLQDLIQKLVRQVKDSDDLLGRTFEVLVEEADDLLKEVVDEVCGLILDDSGDSITEADTNNFEHTENFSADVIALALLAGMARANSTSKDEVFESLRSTFGTKILYRPDATYHSYTLLQALQKPEYKALGLREELAFLLGRQGRHEAAADELAAEVNLAPQEALTRLVRMSPGSDRATAVESLVAAYLRVSAQGRVMRIQDASDVLKCSAGSLEIEKLLLDGRCSDESLSLSQMFPFLEAALVSGNERHRLGEMLRAMKKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIGTLVFVAYPDGSVAHYACHISRD 964
            MLS +GG F R+ + A   S +AFALP+N+WLLTVDQELV YSSFG +++++ENVFKSRSG+++SD+  S     E S+ L     + +S+SSL+S+ATGI+ RT LDE LA R+EKPP+ T+FS PF+ S++  +E+MAFA+NGS+ GV+EQ+ L E  E      LE+GAK+++CR  R LA V+WP GR+V +EL DDLE+LIE+KEA  ELRLALALVPA+Q+DRM++LRR LA EAR ++WHDAA++HMQNVVN+V++REG N  +LI+EAVELRG  N  W  D  IAT+WADFLFRLRR+IM PS AD+DVLETLC ADESA+RI++L+   H + L  GE+LIT K   LR+EE++EALVALYTSL  H KAL L++NS+  N FNGV+ YLS  M  SD+PD +F++L+WLA  + EE  GR++L+ LI K+V   +DS+ LL R FEVLVEE ++L+  VV E+     D+  +   E      E  E  SADV+A A+LAGM RA+   K  VF+ LR+ FGT IL+RPD +YHSYTLLQALQ  E KALGL EELAFLLGRQGRHEAAADELAAE NLAP EAL RL RM    D+ +A +SLVAAYLRVS +GR MRIQDAS VL+C  G LEIEKLLLDGRCSD SL++S+M PFL+AAL SGNER RL ++ RA +KSEVRR+REEVLTRRRR V+IGHDRACTLCTRRIG  V  AYPDGSVAH ACH+S+D
Sbjct:    1 MLSFLGGLFARKSMLANVASAVAFALPDNRWLLTVDQELVPYSSFGARIDDLENVFKSRSGLDMSDT-GSVGLGTEGSTDLKPPMTKRDSISSLSSIATGISQRTFLDETLATRSEKPPKDTVFSSPFIFSVTQKSEIMAFASNGSLPGVVEQLCLVEGQE-----KLEEGAKIMLCRKDRALAAVYWPNGRVVVVELTDDLESLIEQKEAEGELRLALALVPADQVDRMIALRRMLAKEARQEEWHDAAVHHMQNVVNLVVRREGINQVDLITEAVELRGPRNGGWHKDKDIATLWADFLFRLRRRIMRPSLADIDVLETLCYADESAARIKALMAVDHAVGLHTGETLITRKECALREEERVEALVALYTSLGEHGKALLLIKNSDKQNTFNGVAGYLSDGMRASDDPDSFFSNLKWLAHRSREERYGRDELRKLIVKVVHDCQDSETLLRRVFEVLVEEVEELVDMVVRELSKACCDEGNEGPEEKKCGT-EAEETASADVLASAMLAGMVRASMLEKRNVFDRLRALFGTSILHRPDQSYHSYTLLQALQTTENKALGLHEELAFLLGRQGRHEAAADELAAEPNLAPDEALARLTRMLSVLDKPSASDSLVAAYLRVSCEGRAMRIQDASKVLRCGGGHLEIEKLLLDGRCSDNSLTVSEMRPFLQAALESGNERLRLADIFRASRKSEVRRLREEVLTRRRRFVLIGHDRACTLCTRRIGNSVLAAYPDGSVAHLACHMSKD 741          
BLAST of Ggra8465.t1 vs. uniprot
Match: A0A5J4XV63 (Vam6 Vps39 isoform X1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XV63_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 2.180e-9
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 0
Query:  877 LSLSQMFPFLEAALVSGNERHRLGEMLRAMKKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIGTLVFVAYPDGSVAHYACHISRD-NQELNAS 971
            + L  + PFLE A+    E+ R   ++R++++S+  ++RE++   ++R V++  +RAC LC RRI   VFVAYPDG +AHY+CH  +  +Q+L+ S
Sbjct:  909 MPLRLLLPFLEGAVRLLVEQVRNAAVVRSLRRSDNLQVREDLTKSKQRSVLVTSERACLLCHRRIANTVFVAYPDGPLAHYSCHKKQTGSQQLDPS 1004          
BLAST of Ggra8465.t1 vs. uniprot
Match: S8A8B6 (CNH domain-containing protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8A8B6_DACHA)

HSP 1 Score: 62.0 bits (149), Expect = 6.000e-6
Identity = 52/186 (27.96%), Postives = 80/186 (43.01%), Query Frame = 0
Query:  784 AFLLGRQGRHEAAADELAAEV-NLAPQEALTRLVRM--SPGSDRATA----VESLVAAYLRVSAQGRVMRIQDASDVLK---CSAGSLEIEKLLLDGRCSDESLSLSQMFPFLEAALVSGNERHRLGEMLRAMKKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIGTLVFVAYPDGSVAHYAC 959
            A +L R G H  A +    ++ +    EA    V     P SD A      V S++         G   +IQ A D+L         LE  KL+       ES+ +S +  + E  +   N R  +  ++  + KSE  R  E     +++ V+IG +R C +C +R+G  V   +PDG V HY C
Sbjct:  872 AAILSRLGEHRDALEIFVFKMQDFGKAEAYCNRVHALSPPASDPAETTTETVYSILLTLFLTPPPGYEPQIQPALDLLSRHGARVDPLETLKLI------PESIKVSDLEHYFENRIRHSNSRVNMNRVMAQLYKSEAFRWEELNFEAKKKAVIIGEERVCPVCHKRLGKSVISVFPDGQVVHYGC 1051          
The following BLAST results are available for this feature:
BLAST of Ggra8465.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ITC80.000e+078.14Vam6/Vps39-like protein n=1 Tax=Gracilariopsis cho... [more]
R7Q6G41.950e-30061.23Vps39_2 domain-containing protein n=1 Tax=Chondrus... [more]
A0A5J4XV632.180e-939.58Vam6 Vps39 isoform X1 n=1 Tax=Trebouxia sp. A1-2 T... [more]
S8A8B66.000e-627.96CNH domain-containing protein n=1 Tax=Dactylellina... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 647..667
NoneNo IPR availableCOILSCoilCoilcoord: 963..972
IPR019453Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2PFAMPF10367Vps39_2coord: 876..960
e-value: 4.5E-18
score: 65.7
IPR032914Vam6/VPS39/TRAP1 familyPANTHERPTHR12894CNH DOMAIN CONTAININGcoord: 572..963

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:786320..789238 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8465.t1Ggra8465.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 786320..789238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8465.t1 ID=Ggra8465.t1|Name=Ggra8465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=973bp
MATLIRCRPLPNIDSRGARILCATTVPDTGCIIAATDAPELVCGEEQRIS
TEAYAREIACVRYATFASNSLPEQKAVVLALINGVGLRLHSFPNLERIEG
ELADELQAMSNNAQMFSVDSLGSDLVAESFRVALAREATVVLLDINPVRE
NVTVLGEYVLPERIDSVAFSEMTIVVSTSAVHHLLRISRGGVLAVAATVN
RSENHKRQSSAADGGAAMLSLIGGFFWRRGLSAVGESPIAFALPENKWLL
TVDQELVTYSSFGEKLEEMENVFKSRSGMEISDSIASFSTKEESSSQLAR
GKERSNSMSSLASVATGITNRTVLDEALAKRAEKPPQSTIFSPPFVLSMS
LNNEVMAFAANGSVQGVMEQVKLFEDDEADPKKNLEQGAKLLICRYGRNL
AVVFWPGGRIVALELVDDLETLIEEKEAADELRLALALVPAEQIDRMLSL
RRRLAVEARNQDWHDAAIYHMQNVVNMVIKREGNDPELISEAVELRGDSN
STWQSDDVIATMWADFLFRLRRQIMLPSKADVDVLETLCRADESASRIRS
LLQSKHGIPLSVGESLITGKTSILRQEEQIEALVALYTSLSVHEKALTLL
ENSEMANNFNGVSSYLSTIMHPSDNPDVYFTHLRWLAQEAHEEAQGREKL
QDLIQKLVRQVKDSDDLLGRTFEVLVEEADDLLKEVVDEVCGLILDDSGD
SITEADTNNFEHTENFSADVIALALLAGMARANSTSKDEVFESLRSTFGT
KILYRPDATYHSYTLLQALQKPEYKALGLREELAFLLGRQGRHEAAADEL
AAEVNLAPQEALTRLVRMSPGSDRATAVESLVAAYLRVSAQGRVMRIQDA
SDVLKCSAGSLEIEKLLLDGRCSDESLSLSQMFPFLEAALVSGNERHRLG
EMLRAMKKSEVRRMREEVLTRRRRVVVIGHDRACTLCTRRIGTLVFVAYP
DGSVAHYACHISRDNQELNASQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019453VPS39/TGF_beta_rcpt-assoc_2
IPR032914Vam6/VPS39/TRAP1