Ggra8458.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8458.t1
Unique NameGgra8458.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Homology
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A2V3IC87 (Peroxisome biogenesis factor 10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC87_9FLOR)

HSP 1 Score: 146 bits (369), Expect = 7.290e-39
Identity = 78/151 (51.66%), Postives = 91/151 (60.26%), Query Frame = 0
Query:  158 RAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYN 308
            RAHLALFY+R  Y    RR   VRY+AT+    Q  LLP LG ++  MLL D C+AL    +R R  G       HA+G     +     K+       CILCLGA R  TLT CGHVFCW CICHWCSSN +CPLCRQQ+  R+LVCLYN
Sbjct:  106 RAHLALFYLRGRYATFVRRLVSVRYLATSHVTIQDALLPFLGTILLFMLLVDICSALCKLFKRFRVGG--VPQVAHALGLTSPPED----KELSDSHTKCILCLGAARHPTLTSCGHVFCWQCICHWCSSNDVCPLCRQQVAARKLVCLYN 250          
BLAST of Ggra8458.t1 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63733 (peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63733)

HSP 1 Score: 97.4 bits (241), Expect = 8.160e-20
Identity = 89/302 (29.47%), Postives = 142/302 (47.02%), Query Frame = 0
Query:   16 DVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPV-AGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERILR-------ALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            +++R++ KD  Y   LR+ ++ + +    AR   R   +           L  VLY   TT A  Y T GE++  +  V   R   P  +RR L L LL + S  LL   LA +                 R+RI +       A+ +LQR H+ALFY+R V+   A+R   + Y+    +    ++ P+  + +G + ++    +LL +  ++R  G   A        +D+   ++ G   V PR  C LCL   R++T T CGH+FCW+CI  WCS+   CPLCR++     L+ L N+
Sbjct:   10 EIIRSNQKDQFYANFLRSSLADICQSFAGARVWARWRKELD--------VLGDVLYFGLTTIAG-YQTLGEEYVNILQVDPTRRAVPSAKRR-LALVLLYACSPYLLDRLLAYIPKLLESERARAGLSPEVRQRIAQCVPILRQAVMILQRTHIALFYLRGVFYHVAKRMTGIHYLMVRRNLSASSMRPSFHL-LGWLSVTQLTVSLLYSLYKMRR-GTVDAEESDTSVTEDERASEEGG--IVEPRLRCALCLERRRNSTATPCGHLFCWHCITEWCSTKAECPLCREKFQLSRLIYLQNF 297          
BLAST of Ggra8458.t1 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550812 (peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550812)

HSP 1 Score: 94.7 bits (234), Expect = 7.950e-19
Identity = 83/301 (27.57%), Postives = 134/301 (44.52%), Query Frame = 0
Query:   16 DVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERILR-------ALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            +++R++ KD  Y+  LR  ++ + +     R   R   +           L  VLY   TT A  Y T GE++  +  V          +R L L L+ S S  LL   LA +                 R+RI +       A+ ++QR H+ALFY+R V+   A+R   ++Y+      G  ++ P+  V+  + L+    A+LL +  +++A               D     +DG+    P   C LCL   R++T T CGH+FCW CI  WC++   CPLCR++     L+ L N+
Sbjct:    9 EIIRSNQKDQFYVDFLRNSLADICQSLAGPRVWARWRKELD--------VLGEVLYFGLTTVAG-YQTLGEEYVSILQVDHAQRAVPNIKRRLALVLMYSCSPYLLDRLLAYIPKLLETDRAAERISPERRQRISKMIPVLRHAVAIIQRTHMALFYLRGVFYHLAKRWTGIQYLLVRRGPGYGSMKPSFKVLAWLSLI-QLTASLLHSLYKIKAGQGTVTTGTETTSESDLKRVVEDGR-GTNPALRCPLCLETRRNSTATPCGHLFCWECITEWCATKAECPLCREKFQLSRLIYLQNF 298          
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A109FJR4 (RING-type domain-containing protein (Fragment) n=1 Tax=Rhodotorula sp. JG-1b TaxID=1305733 RepID=A0A109FJR4_9BASI)

HSP 1 Score: 88.6 bits (218), Expect = 8.410e-17
Identity = 54/153 (35.29%), Postives = 72/153 (47.06%), Query Frame = 0
Query:  156 LQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYN 308
            L+  HLA+FY+   Y   ++RA  VR+V    +   P+    LGV+M V + + A  A     +R +            V   DD D      D       C LCLG +RDAT T CGHVFCW C+  W      CPLCRQ +   +L+ L N
Sbjct:  121 LRSVHLAVFYLFGRYYNLSKRATGVRFVRLITTSPAPSSYEVLGVLMVVQIAASAAEA----EQRKKRFMIDGLPLQRVVFDPDDPDQAAPYPDEEDAERRCTLCLGTMRDATATECGHVFCWECVVGWAREKAECPLCRQGISLSKLLPLQN 269          
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A0B6XY22 (RING-type domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XY22_9EUPU)

HSP 1 Score: 87.8 bits (216), Expect = 2.500e-16
Identity = 87/312 (27.88%), Postives = 136/312 (43.59%), Query Frame = 0
Query:   12 AAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSAR---QRQRHAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPV-AGRPPQPLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAXXXXXXXXRTRERIL-------RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLL---PALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            A   +++R+H KDD +++LLR+  + + +     R   Q ++H              +T  L     TT     T GE++  +          P   RRAL+LAL Q  +  ++   L  +     +          TRE +L       +A+ +L R HL +FY+  ++   ++R A + Y+     +   + L     LG +    L S     L+     LR    R   + H   +  D + + D    V P   C LCLG  R +TLT CGH++CW+CI  WC S Q CPLCR Q  +  L+ L NY
Sbjct:    5 AGTAEIIRSHQKDDNFLSLLRSSFADICQRIAGPRVWIQWRKHLD------------VTADLAYFCLTTLSDLQTVGEEYVNIIQTDKSLRTLPSKWRRALMLAL-QVCAPYIVQATLDKL-ERHVQDSSPSSIRPTTREAVLSILPLIRKAVTILHRIHLMMFYINGIFYHLSKRVAGIHYIQYMSRERDHSSLRPFQILGYLSVFQLFSSFVINLVLLVTALR----RQRQSSHVSSSLSDVETETDHV-RVMPNEKCPLCLGRRRRSTLTPCGHLYCWSCIHEWCLSKQECPLCRDQFPSHRLIVLQNY 297          
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A836CLL0 (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.930e-16
Identity = 61/172 (35.47%), Postives = 77/172 (44.77%), Query Frame = 0
Query:  151 RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAV-------------GWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            R LR L   HLALF++   Y  AA RAARVR +     D        LGV+M      +  A    A R+L  +               +A LA   V      D      +A   R  C LC+G       TLCGH+FCW CI  WC +N  CPLCRQ    + +VC+Y+Y
Sbjct:  206 RVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDAPLPRYTILGVLMLARFGFEFGAQ---AARKLHGIIFSDGDGSGGXXXXXKANLASQRVPGLSGSD-----TEAAARRHRCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHY 369          
BLAST of Ggra8458.t1 vs. uniprot
Match: K1R1W6 (Peroxisome biogenesis factor 10 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R1W6_CRAGI)

HSP 1 Score: 84.3 bits (207), Expect = 2.720e-15
Identity = 60/186 (32.26%), Postives = 85/186 (45.70%), Query Frame = 0
Query:  145 TRERILRALRVLQRA-------HLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAM---------HAVGADDDHDHDDD-----GKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            TRE IL +L VLQ+A       HLALFY+R V+   A+R   V Y+  + S  + +                      + ++  RA+GW +   +         H+  +        D       DA+  +  C LCL A R  T T CGH+FCW CI  WCS+   CP+CR+ L  ++LV L NY
Sbjct:  101 TREFILNSLPVLQQALSLLQRFHLALFYLRGVFYHIAKRLTNVSYIKFSVSPTEGS----------------------SVQQSFRALGWLSLAQLGFSVLQTLYHSYRSSGTSSPQKDISTRTSNDAIDRK--CCLCLEARRSPTATPCGHLFCWQCIYEWCSTKLECPICRETLQPQKLVFLQNY 262          
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A6P7N436 (peroxisome biogenesis factor 10 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7N436_BETSP)

HSP 1 Score: 85.1 bits (209), Expect = 3.110e-15
Identity = 58/162 (35.80%), Postives = 77/162 (47.53%), Query Frame = 0
Query:  153 LRVLQRAHLALFYVRAVYGGAARRAARVRYVAT-AESDGQPTLLPA---LGVVMGVMLLSDACAALLAARRRLRA-VGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            L +LQR H+ALFY+   +   +RR A + Y+     + G  T+      LG V  + LL   C  L   R+R RA   W+    +                   P  A CILCL   R +T T CGH+FCW CI  WC++   CPLCR++L    LV L NY
Sbjct:  173 LTLLQRLHVALFYIGGCFYHLSRRVAGISYLRVMGPNTGDGTIRSCYRLLGAVSLLQLLFTVCLQLNNFRQRQRARQEWKLYRNLSPQRTQSSR----------PRAARCILCLEERRHSTSTPCGHLFCWECITEWCNNKAECPLCREKLQPHRLVYLRNY 324          
BLAST of Ggra8458.t1 vs. uniprot
Match: peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E1 (peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E1)

HSP 1 Score: 81.6 bits (200), Expect = 3.790e-14
Identity = 54/164 (32.93%), Postives = 76/164 (46.34%), Query Frame = 0
Query:  149 ILRALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAES---DGQPTLLPALGVVMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            I RA+ +LQR HLA FYVR +Y   A+R   V Y++       D        LG++    LLS    +  + R  +            A    ++         ++ PR+ C LCL   RD T T CGH+FCW CI  W ++   CPLCR++     L+ L NY
Sbjct:  141 IRRAVELLQRWHLAWFYVRGMYYQLAKRFTGVTYLSVRSELWRDSARHSYRMLGMLSLTQLLSTLAYSAYSNRNNV--------TEFFAGDLQENTTPAKSSAASLEPRSKCSLCLDVRRDTTATSCGHLFCWRCIFEWAANKAECPLCREKFHQSRLLYLQNY 296          
BLAST of Ggra8458.t1 vs. uniprot
Match: A0A0G4GA00 (RING-type domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GA00_VITBC)

HSP 1 Score: 80.5 bits (197), Expect = 1.640e-13
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0
Query:  246 DGKDAVPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLTRELVCLYNY 309
            D  D VP  ATC+ CLG  RD T T CGHVFCW+CI  W SSN  CP+CR     ++L+ LY+Y
Sbjct:  274 DVPDIVP--ATCLFCLGVCRDPTATACGHVFCWDCIASWASSNPSCPVCRSSCQCQQLLSLYHY 335          
The following BLAST results are available for this feature:
BLAST of Ggra8458.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IC877.290e-3951.66Peroxisome biogenesis factor 10 n=1 Tax=Gracilario... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D637338.160e-2029.47peroxisome biogenesis factor 10-like n=1 Tax=Patir... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145508127.950e-1927.57peroxisome biogenesis factor 10-like n=1 Tax=Aster... [more]
A0A109FJR48.410e-1735.29RING-type domain-containing protein (Fragment) n=1... [more]
A0A0B6XY222.500e-1627.88RING-type domain-containing protein n=1 Tax=Arion ... [more]
A0A836CLL02.930e-1635.47Peroxisome biogenesis factor 10 n=1 Tax=Tribonema ... [more]
K1R1W62.720e-1532.26Peroxisome biogenesis factor 10 n=2 Tax=Crassostre... [more]
A0A6P7N4363.110e-1535.80peroxisome biogenesis factor 10 n=1 Tax=Betta sple... [more]
peroxisome biogenesis factor 10-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9E13.790e-1432.93peroxisome biogenesis factor 10-like n=1 Tax=Priap... [more]
A0A0G4GA001.640e-1354.69RING-type domain-containing protein n=3 Tax=Vitrel... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 257..294
e-value: 1.9E-4
score: 30.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 256..295
e-value: 8.0E-7
score: 29.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 257..295
score: 12.40076
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 233..307
e-value: 8.4E-14
score: 53.3
NoneNo IPR availablePANTHERPTHR23350:SF0PEROXISOME BIOGENESIS FACTOR 10coord: 8..307
NoneNo IPR availablePANTHERPTHR23350PEROXISOME ASSEMBLY PROTEIN 10coord: 8..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 218..309
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..106
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..136
NoneNo IPR availableCDDcd16527RING-HC_PEX10coord: 257..295
e-value: 9.55787E-15
score: 65.3156
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 256..300
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 272..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:771207..772221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8458.t1Ggra8458.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 771207..772221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8458.t1 ID=Ggra8458.t1|Name=Ggra8458.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MSQQPAAALPRAAAGDVLRAHSKDDEYMALLRADVSRLLRLTLSARQRQR
HAAQQPRALRFAAGALTRVLYQLWTTTAPLYATPGEQHAGVAPVAGRPPQ
PLTRRRALLLALLQSSSARLLSVALAAVCGCAFRAAAATPPPPRTRERIL
RALRVLQRAHLALFYVRAVYGGAARRAARVRYVATAESDGQPTLLPALGV
VMGVMLLSDACAALLAARRRLRAVGWRAALAMHAVGADDDHDHDDDGKDA
VPPRATCILCLGAVRDATLTLCGHVFCWNCICHWCSSNQICPLCRQQLLT
RELVCLYNY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS