Ggra8446.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8446.t2
Unique Name	Ggra8446.t2
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	656

Homology

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BLAST of Ggra8446.t2 vs. uniprot
Match: A0A2V3IFC7 (Protein MCM10-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFC7_9FLOR)

HSP 1 Score: 318 bits (815), Expect = 9.960e-98
Identity = 207/533 (38.84%), Postives = 297/533 (55.72%), Query Frame = 0

Query:   56 QDEQLDVELTELFD--DPAPNETVASPPRAPHAEPITANXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQQKRSLLHALRANTQRLSLSAACKKPGAGDRQPVSSVISVKNALSKQPTAEQPEAAHVGDDTTKEKQEEAETSVGGRACDKASSAAPLSTRELMVRRQVAKNAASQPRRARSNPAMQMQIINASTSASPSTGKQQKQFSFHDRDTTNVSLKDAPYDGATLRALFEHHTRVDIGELAIKSDQLRAGSIRDAVVFGVVVEKHSKKRAKDGSS-YAVWTLYNMPRFERSGCAPTSVLLLLFGAAFERWHNVVPGAVFALRKATLLPPRQAEKQSVRGVCLKVSQERHLLYLGVCGDYAVCEALRFDGGPCGKWYDANRLNMCAFHRSQKLKRLTSSQRMDVNNAVRPSMKRPDLKDERKLSSVIPAESEKQRRRPSVRKENKQQKEDNKRIRRLRDSRQHAKAASANGGQQAQVTGVRRKQYKNAVYTLQQLGFTLDEHGSLQAPRDAARTSDYGPLFKRARTQGA 585
            +++ LD EL  +FD   PAPN   ASP RA    P+                                 P+ KRS+L AL  N  RLS S+A  K  A  ++ V++             +  P   H       ++Q   +T                S ++LM +R +A+      +R  S+    MQ+++A T+  P+    Q   ++ DR  +N+SL+D+PY    L ALFE +TRVDI EL +KS+Q+R   I DA+VF V+V KH K++A+  +  YAVW++YNMPRFER+   P+SVLLL+FG AF+ WH  VPG  FALRK T+LPPR A ++ + GVCLKVS++  +LYLGV  D+ +CE +  DG  CG W+DANR++MC  H   KLKRLT+S+RMDVNN +RP+ KR    +E KLS V+  +++           NK+ + D  RI+RL+ SRQ+++ A+            RR +Y  AV TL++LGF LD++GSL AP +  R+ +YGPL+K   TQ +
Sbjct:   10 EEDDLDAELAAVFDAPQPAPNRC-ASPQRASTPPPVAV-----------------------PPSPERTPPRTKRSILDALLDNADRLSRSSAAFKLAADLKRTVAAAAHHSLHTHSDHRSAPPRNEH-------QQQPPIQTP---------------SAKQLMQQRIIARKPV---KRKPSSSRTAMQVVSA-TATQPAHSATQLH-TYEDRQLSNLSLRDSPYTKHALHALFERNTRVDIAELPLKSEQMRTAQISDAIVFAVLVAKHKKRQARGNAGMYAVWSVYNMPRFERANSPPSSVLLLVFGNAFQSWHTAVPGTAFALRKPTVLPPRMAAEEKLSGVCLKVSKDTQMLYLGVARDFGMCEGIVRDGASCGSWFDANRMSMCVKHSRIKLKRLTTSKRMDVNNVLRPTPKRKTPTEENKLSVVMEEKAD-----------NKEARRDRDRIKRLKRSRQNSQTATER-------VNKRRVEYVTAVQTLRRLGFVLDDNGSLIAPSEE-RSREYGPLYKPQPTQSS 472

The following BLAST results are available for this feature:

BLAST of Ggra8446.t2 vs. uniprot

BLAST of Ggra8446.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFC7	9.960e-98	38.84	Protein MCM10-like n=1 Tax=Gracilariopsis chorda T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 254..445 e-value: 4.9E-28 score: 100.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 614..628
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 605..655
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 468..519
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 522..536
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..536
IPR015408	Zinc finger, Mcm10/DnaG-type	PFAM	PF09329	zf-primase	coord: 411..454 e-value: 1.1E-8 score: 34.7
IPR040184	Minichromosome maintenance protein 10	PANTHER	PTHR13454	PROTEIN MCM10 HOMOLOG	coord: 53..627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:737808..739775 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8446.t2	Ggra8446.t2	Gracilaria gracilis GNS1m male	mRNA	tig00000041_pilon 737808..739775 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8446.t2 ID=Ggra8446.t2|Name=Ggra8446.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=656bp
MTESDAHLNAGACAIFNQTTSQMSASSPSPGPPLQPTAMNNSDANELLKS
RAPDEQDEQLDVELTELFDDPAPNETVASPPRAPHAEPITANESDPQLDA
ELSKVIDKPAAKEVPPSPPRAVPQQKRSLLHALRANTQRLSLSAACKKPG
AGDRQPVSSVISVKNALSKQPTAEQPEAAHVGDDTTKEKQEEAETSVGGR
ACDKASSAAPLSTRELMVRRQVAKNAASQPRRARSNPAMQMQIINASTSA
SPSTGKQQKQFSFHDRDTTNVSLKDAPYDGATLRALFEHHTRVDIGELAI
KSDQLRAGSIRDAVVFGVVVEKHSKKRAKDGSSYAVWTLYNMPRFERSGC
APTSVLLLLFGAAFERWHNVVPGAVFALRKATLLPPRQAEKQSVRGVCLK
VSQERHLLYLGVCGDYAVCEALRFDGGPCGKWYDANRLNMCAFHRSQKLK
RLTSSQRMDVNNAVRPSMKRPDLKDERKLSSVIPAESEKQRRRPSVRKEN
KQQKEDNKRIRRLRDSRQHAKAASANGGQQAQVTGVRRKQYKNAVYTLQQ
LGFTLDEHGSLQAPRDAARTSDYGPLFKRARTQGAATAALTARATEALTA
RATEAATARATEAATARADDKRSDASRAAADGQDAPAAAPMQLELSDESD
SDTAD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015408	Znf_Mcm10/DnaG
IPR040184	Mcm10