Ggra8446.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8446.t1
Unique NameGgra8446.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Homology
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BLAST of Ggra8446.t1 vs. uniprot
Match: A0A2V3IFC7 (Protein MCM10-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFC7_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 3.560e-64
Identity = 117/244 (47.95%), Postives = 161/244 (65.98%), Query Frame = 0 
Query:    1 MPRFERSGCAPTSVLLLLFGAAFERWHNVVPGAVFALRKATLLPPRQAEKQSVRGVCLKVSQERHLLYLGVCGDYAVCEALRFDGGPCGKWYDANRLNMCAFHRSQKLKRLTSSQRMDVNNAVRPSMKRPDLKDERKLSSVIPAESEKQRRRPSVRKENKQQKEDNKRIRRLRDSRQHAKAASANGGQQAQVTGVRRKQYKNAVYTLQQLGFTLDEHGSLQAPRDAARTSDYGPLFKRARTQGA 244
            MPRFER+   P+SVLLL+FG AF+ WH  VPG  FALRK T+LPPR A ++ + GVCLKVS++  +LYLGV  D+ +CE +  DG  CG W+DANR++MC  H   KLKRLT+S+RMDVNN +RP+ KR    +E KLS V+  +++           NK+ + D  RI+RL+ SRQ+++ A+            RR +Y  AV TL++LGF LD++GSL AP +  R+ +YGPL+K   TQ +
Sbjct:  248 MPRFERANSPPSSVLLLVFGNAFQSWHTAVPGTAFALRKPTVLPPRMAAEEKLSGVCLKVSKDTQMLYLGVARDFGMCEGIVRDGASCGSWFDANRMSMCVKHSRIKLKRLTTSKRMDVNNVLRPTPKRKTPTEENKLSVVMEEKAD-----------NKEARRDRDRIKRLKRSRQNSQTATER-------VNKRRVEYVTAVQTLRRLGFVLDDNGSLIAPSEE-RSREYGPLYKPQPTQSS 472
The following BLAST results are available for this feature:
BLAST of Ggra8446.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IFC73.560e-6447.95Protein MCM10-like n=1 Tax=Gracilariopsis chorda T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 7..104
e-value: 3.4E-18
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..195
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..314
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
IPR015408Zinc finger, Mcm10/DnaG-typePFAMPF09329zf-primasecoord: 70..113
e-value: 4.0E-9
score: 36.1
IPR040184Minichromosome maintenance protein 10PANTHERPTHR13454PROTEIN MCM10 HOMOLOGcoord: 13..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:737808..738752 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8446.t1Ggra8446.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 737808..738752 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8446.t1 ID=Ggra8446.t1|Name=Ggra8446.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MPRFERSGCAPTSVLLLLFGAAFERWHNVVPGAVFALRKATLLPPRQAEK
QSVRGVCLKVSQERHLLYLGVCGDYAVCEALRFDGGPCGKWYDANRLNMC
AFHRSQKLKRLTSSQRMDVNNAVRPSMKRPDLKDERKLSSVIPAESEKQR
RRPSVRKENKQQKEDNKRIRRLRDSRQHAKAASANGGQQAQVTGVRRKQY
KNAVYTLQQLGFTLDEHGSLQAPRDAARTSDYGPLFKRARTQGAATAALT
ARATEALTARATEAATARATEAATARADDKRSDASRAAADGQDAPAAAPM
QLELSDESDSDTAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015408Znf_Mcm10/DnaG
IPR040184Mcm10