Ggra8434.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8434.t1
Unique NameGgra8434.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Homology
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A2V3II20 (Ran-binding protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II20_9FLOR)

HSP 1 Score: 243 bits (620), Expect = 3.580e-72
Identity = 196/469 (41.79%), Postives = 251/469 (53.52%), Query Frame = 0
Query:    1 MKRAAEKQLGRDDVDAANDESAPENPSHFERAAPDVLAKRRILKVRRTVPAQP-AQTSAAKANPFASLQL--PKAPATAA-SPPVS-----------------EQTTVKAXXXXXXXAENAQEV-APPIPDKQKADAESAAADKPPAVERKSTAESEENTA--SAPVESGVKKDEKAQHEERHSADGDDSDKRVSPAVP----QAKNASAGEQAPTEEVDKAPTSETKTEQAATKHVESERGVQNGATAGASHPSDNVAEKEASENVTAARAESKPS----SVGTNEAVNGTNAFTKLGSKPAIIFGGSGANNIKSFATAAKADGAFKFNAGGAAAPCSDAQSHEFKEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASKCYLLRFATHDACAEFIAAVEKWKETAE 437
            MKRAAEKQL RDDVD   D    +  + F+RAAP+VLAKRRILK RRT+  QP AQ ++  +NPFA+L+   P+ P+    +PP +                 E             A N  +V  PP+ DK +         KPP+ + +S        A  +AP +     ++ A                  P  P     AK A   +Q    E    P +  K    A     ++     GA  G   P        A+ N  +A +  KP+    S     A N TN     G+KPAIIFGG+ + N  SFATAAK D AF F       P + A +H FKEQ V+SGEEEE  LFR R+KLYSLEGE  K  W+E GVGALKMN+H E  +VRLLMRSEGV RVILNTPL+  +KLDRATERS+RFQG+E++ +KC+LLRFAT DA +EF+AAVEKWK++ +
Sbjct:    1 MKRAAEKQLTRDDVDDEADAEHTDGNAPFQRAAPEVLAKRRILKARRTI--QPSAQPASNNSNPFATLRASQPEPPSEPQHAPPAAXXXXSEPXXXXXXXDAQEAAQPVESPPPHPPASNPDQVETPPVSDKHQPP-------KPPSTQVQSAEPPSAVGAPVTAPEQPQPLAEQPAXXXXXXXXXXXXXXXXTHPEKPLSDVPAKTAVPNKQPELPE----PATPVKP---AKPDSTTDAFKPKGAPPGDQPPHGENESDNANSNAQSAPSAEKPTAPEPSAAPKPASNATN-----GTKPAIIFGGASSLNTVSFATAAKTDNAFNFKNSQVKTPAAKATNHVFKEQPVTSGEEEETNLFRNRAKLYSLEGEQGKQSWRERGVGALKMNEHNETHKVRLLMRSEGVFRVILNTPLYDRIKLDRATERSIRFQGFEEQDAKCFLLRFATRDATSEFVAAVEKWKKSVQ 448          
BLAST of Ggra8434.t1 vs. uniprot
Match: R7QJC6 (RanBD1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJC6_CHOCR)

HSP 1 Score: 131 bits (330), Expect = 3.100e-30
Identity = 154/489 (31.49%), Postives = 211/489 (43.15%), Query Frame = 0
Query:    1 MKRAAEKQLGRDDVDAANDESAPENPSHFERAAPDVLAKRRILKVRRTVPAQPAQTSAAKANPFASLQLPKAPATAASPPVSEQTTVKAXXXXXXXAENAQEVAPPIPDKQKADAESAAADKPPAVERKSTAESEENTASAPVESGVKKDEKAQHEERHSADGDDSDKRVSP---------------------------------------------AVPQAKNASAGEQ-APTEEVDKAPTSETKTEQAATKHVESERGVQNGATAGASHPSDNVAEKEASENVTAARAESKPSSVGTNEAVNGTNAFTKLGSKPA--IIFGGSGANNIKSFATAAKAD-GAFKFNAGGAAAPCSDAQSHEFKEQHVSSGEEEEETLFRMRSKLYSLE-GESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASK---CYLLRFATHDACAEFIAAVEKWKETA 436
            MKR++++Q+ +DD +A   + A E+   F++A PDVLAKRRILK RRT+PA       A  NPFA++       T  +PP ++                  ++  P P K   D       KP   E + T +  E  A+ P         K +  +R  ADG+      SP                                             A P  K + AGE  A +E   +AP  E  ++ A T  V S     N A       +D+ A+    E        S P S     A   T +    G  PA  I FG      + +FA AA A  G F       A P   A   EFKE  V +GEE +E LFR R+KLY L+ GE     WKE GVG LK+N+  E K+ RL+MR+E  L+VILN+P+F+  + DRAT RS+RF GY+ +       +L RF +  A    I  +E  + TA
Sbjct:    1 MKRSSDRQITKDDAEAGTLDGANEDARPFQKAPPDVLAKRRILKARRTLPADATNEENAP-NPFAAIS------TGPAPPAADA-----------------QITSPAPCKPTND-------KPAVTEEEKTEKPLETPAAIPTP-------KIEETDR-PADGNAKPFEPSPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADVAPPIDKGSQAGEHLAKSEATGRAPE-EPSSKVADTPQVNSAPASANDAKQTGEGTADSAAKYVERE------VPSPPDSSKATSAAAPTPSMHANGKAPAAPITFGNLSGAPVLTFANAAAASKGMFNIAPVATAPPPPPAPVKEFKEAPVQTGEEGDEELFRERAKLYELQTGEKGTRSWKEKGVGHLKVNRDIETKKARLVMRTEATLKVILNSPIFEGFRFDRATPRSLRFLGYDAKDINKRLTFLARFDSVVASNSLIEVIESTQRTA 443          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A7S0BIA6 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIA6_9RHOD)

HSP 1 Score: 105 bits (262), Expect = 1.160e-21
Identity = 59/133 (44.36%), Postives = 87/133 (65.41%), Query Frame = 0
Query:  305 PCSDAQS---HEFKEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASKC-YLLRFATHDACAEFIAAVEKWK 433
            P S+AQ     + +E  VS+GEE E+  FR ++KLY LEG ++K++WKE GVG LK+N  K +K  RL+MRSEG LR+ILN  L++ ++LD+A ERSVRF  ++       YL+R    +  +  + AV+ W+
Sbjct:  199 PSSNAQQGTLQKLRESAVSNGEELEQAEFRSKAKLYELEG-TEKVQWKERGVGQLKLNVGKNSKSARLIMRSEGSLRLILNANLYEDIRLDKANERSVRFSAFDGDMKPTNYLIRLPLKEDLSRLMTAVDDWR 330          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A1X6NMY1 (RanBD1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMY1_PORUM)

HSP 1 Score: 104 bits (259), Expect = 2.430e-20
Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 0
Query:  313 EFKEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGY---EQRASKCYLLRFATHDACAEFIAAVEKWKETAE 437
            E KE    +GEEEE   +  R+KLY LEG ++   WKE GVGA+K+N H +    RLLMR+E  L VILNTPLF    +DRA ER+VRF G    + + S  YLLRF+  D  A  + AV K  E AE
Sbjct:  293 EMKEVEAHTGEEEETVAYHARAKLYVLEGGAN---WKERGVGAVKLNVHGDTGAGRLLMRTEATLHVILNTPLFPGFAVDRAAERAVRFAGLSPDDAKKSVSYLLRFSLKDDAAGLVEAVRKHVEGAE 417          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A7S0ZDG7 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDG7_9RHOD)

HSP 1 Score: 85.1 bits (209), Expect = 1.760e-14
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 0
Query:  316 EQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMN-----QHKEN-KRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASK--CYLLRFATHDACAEFIAAVEKWK 433
            EQ + +GEE+EE  F+ + K Y LE  S    WKE GVG LK+N     + KEN    R++MR++G +RV+LN  L+K  K+D+A E+SVRF   +    K   +L++F+  D       AVE WK
Sbjct:  232 EQEIKTGEEDEEERFKAKGKAYRLEDGS----WKERGVGFLKLNVETKPEKKENGPGARIVMRTDGSMRVMLNFALWKEFKVDQANEKSVRFIAPDDETKKPTSFLVKFSNKDDITRLTDAVESWK 353          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A8H3YHJ5 (RanBD1 domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YHJ5_9TREE)

HSP 1 Score: 85.1 bits (209), Expect = 4.160e-14
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 0
Query:  315 KEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQ 406
            ++Q V +GEEEE T+F++RSKL+ ++G +    WKE G G+L +N HK++K  RL+MR+EGV R+ILNTPL+  +K++  T+R V+F   E+
Sbjct:  381 QQQEVPTGEEEENTIFQVRSKLHVMDGGA----WKERGTGSLHLNVHKKDKSARLVMRAEGVFRLILNTPLYAGMKVE-LTDRYVKFPIVEE 467          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A1Y1WVD5 (PH domain-like protein (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WVD5_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 6.070e-14
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 0
Query:  307 SDAQSHEFKEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENK-RVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGY-EQRASKCYLLRFATHDACAEFIAAVEK 431
            S+ ++ +FKE    +GEE+EE +  +R+KLY  E  S    WKE G+G LK+N++KENK +VRL+MR EG+LRVILN  L  ++K +   ++ + F    + +  K YL++  T  +  E   A+ K
Sbjct:  117 SNDKNKQFKETDTKTGEEDEECIHSVRAKLYEDENNS----WKERGIGLLKINRNKENKSKVRLVMRVEGILRVILNERLIPNMKFNIIQDKYISFAAISDSKTIKKYLIKCGTAMSANELYQALIK 239          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A7H9B5B1 (RanBD1 domain-containing protein n=1 Tax=Zygotorulaspora mrakii TaxID=42260 RepID=A0A7H9B5B1_ZYGMR)

HSP 1 Score: 80.9 bits (198), Expect = 4.660e-13
Identity = 39/90 (43.33%), Postives = 62/90 (68.89%), Query Frame = 0
Query:  315 KEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGY 404
            ++Q + SGEE EET++++ +KLY L    +   WKE GVGA+K+NQ+   ++ RL+MRS G+L+VILN PL K +K+ R    S++ + +
Sbjct:  234 QKQEIKSGEESEETIYQVNAKLYQLSDFEEG--WKERGVGAIKVNQNSNTEKARLIMRSRGILKVILNLPLIKGIKIQRGFPGSLQSEKF 321          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A1Y1YRV2 (PH domain-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YRV2_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 1.730e-12
Identity = 44/114 (38.60%), Postives = 73/114 (64.04%), Query Frame = 0
Query:  319 VSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMN-QHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASKC-YLLRFATHDACAEFIAAVE 430
            V++GEE E+TLF++R+KL+ L+ E+    WKE G+G LK+N +H + K  RL+MR+EGVL+ ILN  +F  +K +  +E+ VR   +E+      Y ++  + ++  E   A+E
Sbjct:  220 VTTGEEGEDTLFQVRAKLFVLDAETKG--WKERGIGFLKLNVKHNDKKSARLIMRTEGVLKAILNVVVFADMKCELVSEKYVRIVAFEEGQKIVQYTIKVGSKNSAEELCDAIE 331          
BLAST of Ggra8434.t1 vs. uniprot
Match: A0A397JPC9 (RanBD1 domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JPC9_9GLOM)

HSP 1 Score: 77.8 bits (190), Expect = 3.370e-12
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  315 KEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKECGVGALKMNQHKENKRV-RLLMRSEGVLRVILNTPLFKHVKLDRATERSVRFQGYEQRASKCYLLRFATHDACAEFIAAVE 430
            +EQ V +GEE+E T F +R+KLY L+G+     WKE GVG L++N  + NK+  RL+MR++ VL+VILN  LF+ + ++R+ E+ V+   YE        ++ +  +A  E   A++
Sbjct:  198 QEQEVLTGEEDEITQFFVRAKLYCLDGQ-----WKERGVGTLRLNYPRNNKKSPRLVMRADNVLKVILNIALFRGMHVERSQEKFVKLFAYEGSKLVHLAIKLSNPNAADELYEAIK 309          
The following BLAST results are available for this feature:
BLAST of Ggra8434.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II203.580e-7241.79Ran-binding protein 3 n=1 Tax=Gracilariopsis chord... [more]
R7QJC63.100e-3031.49RanBD1 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A7S0BIA61.160e-2144.36Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NMY12.430e-2049.22RanBD1 domain-containing protein n=1 Tax=Porphyra ... [more]
A0A7S0ZDG71.760e-1441.27Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A8H3YHJ54.160e-1447.83RanBD1 domain-containing protein n=1 Tax=Naganishi... [more]
A0A1Y1WVD56.070e-1439.37PH domain-like protein (Fragment) n=1 Tax=Anaeromy... [more]
A0A7H9B5B14.660e-1343.33RanBD1 domain-containing protein n=1 Tax=Zygotorul... [more]
A0A1Y1YRV21.730e-1238.60PH domain-like protein n=1 Tax=Basidiobolus merist... [more]
A0A397JPC93.370e-1238.46RanBD1 domain-containing protein n=1 Tax=Diversisp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000156Ran binding domainSMARTSM00160ranbd_3coord: 308..432
e-value: 5.9E-27
score: 105.5
IPR000156Ran binding domainPFAMPF00638Ran_BP1coord: 319..433
e-value: 1.3E-22
score: 80.3
IPR000156Ran binding domainPROSITEPS50196RANBD1coord: 318..440
score: 20.100286
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 303..440
e-value: 8.8E-35
score: 121.6
IPR015007Nuclear pore complex, NUP2/50/61PFAMPF08911NUP50coord: 1..68
e-value: 1.4E-13
score: 51.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..98
NoneNo IPR availablePANTHERPTHR23138:SF142NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATEDcoord: 2..434
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 312..437
IPR045255Ran binding protein RanBP1-likePANTHERPTHR23138RAN BINDING PROTEINcoord: 2..434

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:619347..620743 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8434.t1Ggra8434.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 619347..620743 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8434.t1 ID=Ggra8434.t1|Name=Ggra8434.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MKRAAEKQLGRDDVDAANDESAPENPSHFERAAPDVLAKRRILKVRRTVP
AQPAQTSAAKANPFASLQLPKAPATAASPPVSEQTTVKAATPPTTAAENA
QEVAPPIPDKQKADAESAAADKPPAVERKSTAESEENTASAPVESGVKKD
EKAQHEERHSADGDDSDKRVSPAVPQAKNASAGEQAPTEEVDKAPTSETK
TEQAATKHVESERGVQNGATAGASHPSDNVAEKEASENVTAARAESKPSS
VGTNEAVNGTNAFTKLGSKPAIIFGGSGANNIKSFATAAKADGAFKFNAG
GAAAPCSDAQSHEFKEQHVSSGEEEEETLFRMRSKLYSLEGESDKMRWKE
CGVGALKMNQHKENKRVRLLMRSEGVLRVILNTPLFKHVKLDRATERSVR
FQGYEQRASKCYLLRFATHDACAEFIAAVEKWKETAEDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000156Ran_bind_dom
IPR011993PH-like_dom_sf
IPR015007NUP2/50/61
IPR045255RanBP1-like