Ggra8433.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8433.t1
Unique NameGgra8433.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length900
Homology
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A2V3IFI5 (Ribonuclease S-7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI5_9FLOR)

HSP 1 Score: 321 bits (822), Expect = 1.580e-98
Identity = 171/313 (54.63%), Postives = 201/313 (64.22%), Query Frame = 0
Query:  594 AAWAEPRGERVCASNRTTEPPPRAIFDMYVLALQWPFSSCWLLSSRAPICQYPPPAFVVGGLWPTSHELAASPTCCAGSFSLSTIFDIAPALRRYWPDLRRADEQALWRSQWLLHGTCSGLGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEATGGYHVRMRCERVSNSSHMMLSAVHVCLHKTRFDTINCAPTC-----SQPHSGCCDRYHPILIPYWSHGRSDDLDDSAQGADSQQQQQASDQRKPYRVLSWIGGVLLAALLFMLAVCWL-SPLFTTAPWSTT--LPDRTSYTRIN 898
            AA   PR       N +  PP R  F++YVL+L WPFS C   ++ + +C YPPP F +GGLWP S   +A PTCCA SFSLSTIFDIAPALRRYWPD   ADE ALWR+QW+LHG+CSGLGLRTYFKKVLELSRRYDFVR+LNSHGVVAS NK H FELVQ+AL+EATGGY VRMRCE+  N  H +L AVHVCLH TRFDTINC  TC          GCCD    I IPYWSH  SD  ++    A        + Q    + L W+       L  ++ + WL + L  +A  S +     RT Y RI+
Sbjct:   37 AAPLPPRPPLCPPLNVSAPPPTRVHFELYVLSLHWPFSVCSRPTAHSALCHYPPPTFTIGGLWPLSTSRSAQPTCCARSFSLSTIFDIAPALRRYWPDFEHADEAALWRTQWVLHGSCSGLGLRTYFKKVLELSRRYDFVRALNSHGVVASTNKAHAFELVQNALNEATGGYRVRMRCEKALN--HTVLHAVHVCLHNTRFDTINCPHTCVISTNDSSQQGCCDPSKRIYIPYWSHA-SDSSEEGQHDA-----AMPAGQLLVTKYLPWLLRAFALLLFLLVMLYWLCTSLLRSAAASPSRRASSRTQYARIS 341          
BLAST of Ggra8433.t1 vs. uniprot
Match: ribonuclease S-2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D889B (ribonuclease S-2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D889B)

HSP 1 Score: 156 bits (394), Expect = 4.220e-39
Identity = 81/189 (42.86%), Postives = 108/189 (57.14%), Query Frame = 0
Query:  646 PPPAFVVGGLWPTSHELAASPTCCAGS----------FSLSTIFDIAPALRRYWPDLR-RADEQALWRSQWLLHGTCSGLGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEATGGYHVRMRCERVSNSSHMMLSAVHVCLHKTRFDTINCAPTCSQPHSGCCDRYHPILIPYWS 823
            PP +F+VGGLWP S +    P CC  S          F+L  I D+ P LRR WPDL  R     LW+ QW  HGTCS   +R YF+K LEL+RR+DF+R+L++ G+VASA + H    VQ A++ A+GG  VR+ C R    +  +L+A+HVC     F  ++C   C +    CC     I IPYWS
Sbjct:    3 PPASFIVGGLWP-SQDSGHRPLCCLASPHALGTRNTSFALGRIVDLEPQLRRLWPDLSSRESATRLWKMQWDKHGTCSRFTVRGYFRKALELARRFDFMRALSAEGIVASAQRRHPLSKVQRAVNYASGGSSVRLECRRTWQGT--ILTALHVCFDADGFRAVDCPFACKKRDDTCCHTGELIQIPYWS 188          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A2V3IFB6 (Wilms tumor protein-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFB6_9FLOR)

HSP 1 Score: 98.2 bits (243), Expect = 1.250e-17
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0
Query:  238 PEHVCKICKKTFKRGHNLKIHQRLHTGDHPYACPFQGCSKEYKWKSSIVSHINWHLRKKNDRIQGYDTVSSLVNLGKQ 315
            P+H C +C++ FKR HNLKIH R HTG+ P+ CPF  C KE++WKSSI SHI+WH RK    +  ++ +  L+  GK+
Sbjct:  203 PKHRCSVCQRVFKRAHNLKIHNRKHTGEMPFGCPFPECEKEFRWKSSIASHIDWHKRKNPLGVADFN-LKRLIRKGKE 279          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A6J1CGP7 (Ribonuclease T(2) n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CGP7_MOMCH)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-11
Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAP---ICQ--YPPPAFVVGGLWPTSHELAASPTCCA-GSFSLSTIFDIAPALRRYWPDLR-------RADEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEA 761
            FD +VLALQWP +SC       P    C+    P  F + GLWP  +E    P+CC+  SFS + I  +   +++YWP  R          + + W  ++  HGTC+    +G   YF   L +  +Y+  + LN  G VAS  + +    V +A+ +A
Sbjct:   43 FDYFVLALQWPATSCTNPGKCCPSNGCCRGAESPTEFTIHGLWP-QYEEKGWPSCCSDASFSENEILSLNKDIQKYWPTYRCGTTSTCHRTKGSFWAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKVLNDAGFVASDTEKYALGDVVAAVQDA 200          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A6J1JAL4 (Ribonuclease T(2) n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JAL4_CUCMA)

HSP 1 Score: 75.5 bits (184), Expect = 3.040e-11
Identity = 62/218 (28.44%), Postives = 93/218 (42.66%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAPI---CQYP--PPAFVVGGLWPTSHELAASPTCCAG-SFSLSTIFDIAPALRRYWPDLRRA-------DEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEATGGYHVRMRCERVSNSSHMMLSAVHVCLHKTRFDTINCAPTCSQPHSGCCDRYHPILIP 820
            FD +VLALQWP SSC  +S   P    C     P  F + GLWP  ++    P+CC   +F+ + +  +   L RYWP  R          + + W  Q+  HGTC     L    YF   L L   Y+   +L    ++AS  K +  E V  A+  A    + ++ C +       ++  + +C  K  F  I+C  T S P       +H +  P
Sbjct:   38 FDYFVLALQWPGSSCRNVSMCCPTNGCCHRAELPAEFTIHGLWP-QYQDKGWPSCCTNETFNENEVSSLFEDLERYWPSYRCGLVSSCSNRKGSFWAHQYEKHGTCGSPVILHQYDYFFTTLALFFNYNVTEALEEADIIASDTKKYGIEDVFRAVRSAFKA-NPKITCGKKG-----IIKELRLCFDK-EFQLIDCDATKSCPKFVSLPEFHELSKP 247          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A6L2PCI0 (Extracellular ribonuclease LE n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2PCI0_TANCI)

HSP 1 Score: 75.1 bits (183), Expect = 7.420e-11
Identity = 49/174 (28.16%), Postives = 80/174 (45.98%), Query Frame = 0
Query:  615 PRAIFDMYVLALQWPFSSCWLLSSRAPICQYPP--PAFVVGGLWPTSHELAASPTCCAGSFSLSTIFDIAPALRRYWPDLRRADEQA-----LWRSQWLLHGTCSGLGLRTYFKKVLELSRR--YDFVRSLNSHGVVASANKPHRFELVQSALDEATGGYHVRMRCERVSNSSH 779
            P A    Y+LA QWP   C    +    CQ  P    F + GLWP  +   ++       F  + I  +A  L +YWP+L+   +Q       W+++W  HG  SGLG+R YF+K LEL +         L +  +  +    ++   +Q+A+ +  GG+   + C +   SS+
Sbjct:  105 PPAQVTSYILATQWPPGVCD--GNTGVTCQIKPVPTEFTIHGLWPQPNGAPSTEP-----FDANKIATLASELSKYWPNLKSKQQQIAFNIDFWKTEWNKHGKYSGLGVREYFEKSLELHKDAGQGLKAKLAAEKITPTIYNTYKLVDIQAAVTKINGGFSGTIICVQRKGSSN 271          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A1S3CHX1 (Ribonuclease T(2) n=3 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3CHX1_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 1.880e-10
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAP---ICQYP--PPAFVVGGLWPTSHELAASPTCCA-GSFSLSTIFDIAPALRRYWPDLR-------RADEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSAL 758
            FD +VLALQWP +SC       P    C+    P  F + GLWP  +E    P+CC   SF+ + I  +A  +++YWP  R          + + W  ++  HGTC+    +G   YF   L +  +Y+  + L+  G VAS  + +  E V +A+
Sbjct:   40 FDYFVLALQWPATSCKNAGKCCPSNACCRGADSPTEFTIHGLWPQYNE-KGWPSCCTDASFNENEIGILAEDIQKYWPTYRCGTSSTCHRTKGSFWAHEYEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFVASNTEKYPIEDVIAAI 194          
BLAST of Ggra8433.t1 vs. uniprot
Match: ribonuclease 2-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FFCE83 (ribonuclease 2-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FFCE83)

HSP 1 Score: 72.4 bits (176), Expect = 3.470e-10
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAPI---CQY--PPPAFVVGGLWPTSHELAASPTCCA-GSFSLSTIFDIAPALRRYWPDLR-------RADEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSAL 758
            FD +VLALQWP +SC       P    C+    P  F + GLWP  ++    P+CC   +F+ + I  +A  +++YWP  R          + + W  ++  HGTC+    +G   YF   L +  +Y+  + LN  G VAS  + +  E V +A+
Sbjct:   42 FDYFVLALQWPATSCKNPGKCCPANGCCRGVDSPTEFTIHGLWPQYND-RGWPSCCTDANFNENEINILAEDIQKYWPTYRCGTTSTCHRTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLNDAGFVASNTEKYPIEDVVAAI 196          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A6J1J670 (Ribonuclease T(2) n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J670_CUCMA)

HSP 1 Score: 72.0 bits (175), Expect = 4.680e-10
Identity = 48/160 (30.00%), Postives = 76/160 (47.50%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAPI---CQYP--PPAFVVGGLWPTSHELAASPTCCAGS-FSLSTIFDIAPALRRYWPDLR-------RADEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEAT 762
            FD +VLALQWP +SC       P    C+    P  F + GLWP  +E    P+CC  + F+ + I  ++  + +YWP  R          + + W  ++  HGTC+    +G   YF   L +  +Y+  ++L+  G VAS  + +    V  A+  AT
Sbjct:   44 FDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTEFTIHGLWPQYNE-KGWPSCCTDAVFNQNEISLLSEDIEKYWPTYRCGTTSNCHGTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYPLGDVVDAVKNAT 202          
BLAST of Ggra8433.t1 vs. uniprot
Match: A0A0A0L0P9 (Ribonuclease T(2) n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0L0P9_CUCSA)

HSP 1 Score: 72.0 bits (175), Expect = 4.680e-10
Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 0
Query:  619 FDMYVLALQWPFSSCWLLSSRAP---ICQ--YPPPAFVVGGLWPTSHELAASPTCCA-GSFSLSTIFDIAPALRRYWPDLR-------RADEQALWRSQWLLHGTCSG---LGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHRFELVQSALDEATGGYHVRMRCER 773
            FD +VLALQWP SSC       P    C+    P  F + GLWP  +E    P+CC   SF+ + I  +   +++YWP  R          + + W  ++  HGTC+    +G   YF   + +  +Y+  + L+  G VAS  + +  E V +A+         ++ C +
Sbjct:   41 FDYFVLALQWPGSSCKNPGKCCPSNACCRGAESPTEFTIHGLWPQYNE-KGWPSCCTDASFNENEINILTEDIQKYWPTYRCGTTSTCHQTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTITIFSKYNVTKVLSDAGFVASNTEKYPIEDVVAAIKNEFNNATPKISCAK 210          
The following BLAST results are available for this feature:
BLAST of Ggra8433.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFI51.580e-9854.63Ribonuclease S-7 n=1 Tax=Gracilariopsis chorda Tax... [more]
ribonuclease S-2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D889B4.220e-3942.86ribonuclease S-2-like n=1 Tax=Mercenaria mercenari... [more]
A0A2V3IFB61.250e-1750.00Wilms tumor protein-like n=1 Tax=Gracilariopsis ch... [more]
A0A6J1CGP71.320e-1131.45Ribonuclease T(2) n=1 Tax=Momordica charantia TaxI... [more]
A0A6J1JAL43.040e-1128.44Ribonuclease T(2) n=3 Tax=Cucurbita TaxID=3660 Rep... [more]
A0A6L2PCI07.420e-1128.16Extracellular ribonuclease LE n=1 Tax=Tanacetum ci... [more]
A0A1S3CHX11.880e-1031.41Ribonuclease T(2) n=3 Tax=Cucumis melo TaxID=3656 ... [more]
ribonuclease 2-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FFCE833.470e-1030.77ribonuclease 2-like n=1 Tax=Benincasa hispida TaxI... [more]
A0A6J1J6704.680e-1030.00Ribonuclease T(2) n=3 Tax=Cucurbita TaxID=3660 Rep... [more]
A0A0A0L0P94.680e-1028.65Ribonuclease T(2) n=1 Tax=Cucumis sativus TaxID=36... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 268..292
e-value: 2.2
score: 17.3
coord: 240..262
e-value: 0.037
score: 23.2
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 240..262
e-value: 0.0012
score: 19.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 270..292
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 242..262
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 240..267
score: 14.191017
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 268..297
score: 9.306988
IPR001568Ribonuclease T2-likePFAMPF00445Ribonuclease_T2coord: 619..799
e-value: 6.0E-30
score: 104.8
IPR001568Ribonuclease T2-likePANTHERPTHR11240RIBONUCLEASE T2coord: 618..812
IPR036430Ribonuclease T2-like superfamilyGENE3D3.90.730.10coord: 616..820
e-value: 2.6E-38
score: 134.1
IPR036430Ribonuclease T2-like superfamilySUPERFAMILY55895Ribonuclease Rh-likecoord: 619..807
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 264..302
e-value: 3.3E-7
score: 31.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 239..263
e-value: 3.5E-8
score: 35.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 569..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 505..546
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 424..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..544
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 437..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 567..593
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..111
NoneNo IPR availablePANTHERPTHR11240:SF49RIBONUCLEASE 3coord: 618..812
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..853
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 876..899
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 854..875
NoneNo IPR availableCDDcd00374RNase_T2coord: 619..802
e-value: 1.56591E-35
score: 131.81
NoneNo IPR availableTMHMMTMhelixcoord: 857..879
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 240..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:613649..617009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8433.t1Ggra8433.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 613649..617009 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8433.t1 ID=Ggra8433.t1|Name=Ggra8433.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=900bp
MEADLTVDVPDKLLDLDNELSTSDSLLFSCEDYPISELLFDTTDNQLTED
MYRSSVFDGASTEISRFGSNTNTATPPFRPGAPDSNPGASNQLFPQEPLT
EKSGGLDSLQPYPASGFAMYSTAGAVQGREGNDHQDYGRQSLPLEDDGAT
INVGAGPSTYQPPPAMNFSPTMMCAPVNSLREIVHHVEPVEPPAREWEPR
IAEVHQPVPWGNNAPIRQPVHAIRDMLSIPPKERPPNPEHVCKICKKTFK
RGHNLKIHQRLHTGDHPYACPFQGCSKEYKWKSSIVSHINWHLRKKNDRI
QGYDTVSSLVNLGKQVKFFRERSVPMPMGAVQAGRVTRALGSGGRAARPN
TWQTSTVDDGNAATLSYLPSGVLLELPRLQPLREGPMLASANEVAAAPMA
NLPGMSSLGFSMGRREAYEPFRAEVQSGNGQEKWQTQDRRLPQEGRLTQE
RRQAQERWSAQERWRTQENRQAQQDWYTQAGRSAEYVPQARTVGGVHRLP
SFNDVRETVGAARPETTRSCSSSRSCGSESAGMQPQQSPPPSAAAASAAE
SAYRIAACDLVQSCSPPGASPPGASPPGALPPSASPPSASPAAAAWAEPR
GERVCASNRTTEPPPRAIFDMYVLALQWPFSSCWLLSSRAPICQYPPPAF
VVGGLWPTSHELAASPTCCAGSFSLSTIFDIAPALRRYWPDLRRADEQAL
WRSQWLLHGTCSGLGLRTYFKKVLELSRRYDFVRSLNSHGVVASANKPHR
FELVQSALDEATGGYHVRMRCERVSNSSHMMLSAVHVCLHKTRFDTINCA
PTCSQPHSGCCDRYHPILIPYWSHGRSDDLDDSAQGADSQQQQQASDQRK
PYRVLSWIGGVLLAALLFMLAVCWLSPLFTTAPWSTTLPDRTSYTRINA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR001568RNase_T2-like
IPR036430RNase_T2-like_sf
IPR036236Znf_C2H2_sf