Ggra8399.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8399.t1
Unique NameGgra8399.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length601
Homology
BLAST of Ggra8399.t1 vs. uniprot
Match: A0A2V3IKN4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKN4_9FLOR)

HSP 1 Score: 589 bits (1518), Expect = 1.070e-202
Identity = 306/599 (51.09%), Postives = 413/599 (68.95%), Query Frame = 0
Query:    1 MADPLAFFKRPDALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDMIRAVVDWMNDFHDGEQVLLDAMQLHLLGNVNTVIPTIDAALAREPESPSFVSEMLASPRWRNVLYEIAAQHRQSILTDRIYGEARLQQIGYSGSTISSADEVLEIVVEQLGVAMASKS--YEEVDTAVRKIAVLATSSEIYTFMILQFLVKMEHRSADLNSKSIYRYVAQAVRKEAMNYIVNVSGESESTTTLWIYSMLILSDCSFHCYTIPETIVDALLGILHVSARIRLEKDVKVILHVYSTLLGQPHFATNRKFVTDTESI--EDPKQKMLLILALCHSEIVDALLVRLFNPQSTNSGVEQANLKKRNCLCLLLAYSRTFIPLQHEEILRRLCNTETLEELNSLVRRARRDLTQVVKICDELKPGSLVSKANSKHIQHLVVAVKDPTIARGVLFWVEKRLRGGKDVRSLTITLPRYLGFLEVIAQAHCFLQRRVLEVIEEACIRNYPDLAESKVEQLRFTMMNSITGMIRFNMGEMIIYSITTNWVRDDSVEEEHLTRFIISMLRTISPPYHPILYSQMMEFLQDEKVIRAATADETAVELVNDFQ 595
            M++PLA F+R DA+  +D  E+L  +A +GGNV+ ACDALSESY+G PD +RA+VDW+    DGEQ L+D+ Q  LL N +  IP IDAALA + E+ + +S+ LASP W NVL++ A +H+QS+  DR++ EARLQ++G++   I SA +++E VV+Q  V   +++    EV  A+RKIA L TS+E  TF++ QF+ ++EH S DL  K  Y+YV Q +RKE +N +  + GESE     WIY +LIL+D S +   IPE  +DAL+GIL V+ RIRLEK +K++ H+Y TLLGQP     R  + +  +   +DP  K LLI ALCH EI DALL  LFN  S  S V QANLKKR CLCLL+AYS+TF+PLQH+EI+RRL N ETL ELN  VR+A+RDLT VV++C+ELK G++VSK   K I+    A++D   A+G+L W EK LRGGKDVRSL ++  +YLGFLE IA  H  L++ VL VI  A +R Y  L  + VEQLR  +MNSITGM +F  G  I+YS+   W+ ++  EEEH +RF++S+LR ISPPY P   S + EFL+ E+V+RA  AD+TA  LV +F+
Sbjct:    1 MSNPLAAFQREDAILQNDVIEKLETYAASGGNVKAACDALSESYIGRPDALRAIVDWIVQSLDGEQNLIDSFQHQLLTNADAAIPRIDAALATQSEASALISKTLASPTWANVLFKNAEEHQQSLFADRVFQEARLQEVGFTADLIGSAQDLMEAVVQQERVIFGTENPMESEVKRAIRKIAALTTSNESATFVVFQFISQLEHLSTDLFLKRGYQYVVQEIRKEVINCVTAIGGESERVAKQWIYRLLILADSSIYGQQIPEVFIDALMGILDVTPRIRLEKHIKIVTHLYGTLLGQPILTNIRGSLLELRADVRDDPIVKSLLIHALCHEEITDALLALLFNSGSNKSNVVQANLKKRECLCLLVAYSKTFLPLQHDEIVRRLSNKETLAELNLRVRKAKRDLTHVVRVCEELKHGTVVSKFKRKAIEMFASAIEDFITAKGILIWAEKSLRGGKDVRSLLVSAEKYLGFLEAIAFYHSCLRKAVLNVILTAYMREYSGLESANVEQLRTILMNSITGMTKFMAGSDIVYSMAERWLMEEETEEEHFSRFVVSLLRAISPPYEPQFLSCLTEFLRHERVLRAVLADDTASSLVKEFE 599          
BLAST of Ggra8399.t1 vs. uniprot
Match: R7Q5S7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5S7_CHOCR)

HSP 1 Score: 301 bits (772), Expect = 4.380e-90
Identity = 190/581 (32.70%), Postives = 304/581 (52.32%), Query Frame = 0
Query:   12 DALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDMIRAVVDWMNDFHDGEQVLLDAMQLHLLGNVNTVIPTIDAALAREPESPSFVSEMLASPRWRNVLYEIAAQHRQSILTDRIYGEARLQQIGYSGSTISSADEVLEIVVEQLGVAMASK---SYEEVDTAVRKIAVLATSSEIYTFMILQFLVKMEHRSADLNSKSIYRYVAQAVRKEAMNYIVNVSGESESTTTLWIYSMLILSDCSFHCYTIPETIVDALLGIL---HVSARIRLEKDVKVILHVYSTLLGQPHFATNRKFVTDT--ESIEDPKQKMLLILALCHSEIVDALLVRLFNPQSTNSGVEQANLKKRNCLCLLLAYSRTFIPLQHEEILRRLCNTETLEELNSLVRRARRDLTQVVKICDELKPGSLVSKANSKHIQHLVVAVKDPTIARGVLFWVEKRLRGGKDVRSLTITLPRYLGFLEVIAQAHCFLQRRVLEVIEEACIRNYPDLAESKVEQLRFTMMNSITGMIRFNMGEMIIYSITTNWVRDDSVEEEHLTRFIISMLRTISPPYHPILYSQMMEFLQDEKVIRAATAD 584
            DA+  DD   QL  F     + R+A + L ESY G+PDMIRA+V+W + + DG   L  A++  LL +  T+IP +D ALA   +S   V+ +  S RW  V+  +AA++++S L + +  E+RL Q G +   + +    ++ + EQ     +     S +E+     +++ L T  E  T + L+   K+ H +     + +YR V Q VRKEA+  +   +  SE     ++  +  ++DC     ++ + IVDALL +      S R R E + K++  VY  L+G          V +T  E       K++LI  LCH E+ + +L  LF+ +       + ++ KR CLC+LLAYS  FI    +E+   L +    E+L + ++    ++ +V ++C+ LKPG    K     +Q L+   K P IARGVL W ++ L GG ++R L +T P +L FLE IA+ H  LQ  VLE+I EA +R+YP+L   +VE+LR     +ITG++R  M   I+     +W  +  V+  HL  FI  +L+ ISPP+     + +ME L +E+V  A   D
Sbjct:   88 DAILSDDVDHQLSTFLNTHDDPRDATERLMESYEGVPDMIRALVEWSDIYADGTANLEQAVETVLLEHEQTIIPRLDEALATTEKSLPVVTTVTESKRWNPVVCSMAARNKESTLHNLLTRESRLSQAGINQEVLQTPASFVDAITEQFTKLFSPDKQVSDDELLGLYNRVSALCTYDECSTIVSLRMFNKLAHDADTPFMRGLYRRVGQEVRKEAVRVMTAANIMSEHMARQYVIRLAFITDCVESNVSMRKAIVDALLNLFGGTDRSIRRRFETETKILRSVYGCLIGDIEIKEADSDVVETVQEFQGSVADKVVLIRMLCHVEVFEDILKALFSHKYRTYLDGEPDISKRTCLCMLLAYSGVFICKDDKELPTMLEDEVAKEKLRNEMKTTFTEIRRVAEVCESLKPGCPRFKIRGPPVQVLLEGTKSPLIARGVLMWAKEGLEGGSNLRELLVTAPTHLAFLEAIAEKHPVLQGEVLEIIREAFMRDYPELDVIEVEKLRDKFTKTITGLVRIQMAPQIVRMFQGSWANNKRVDLAHLRHFINGLLQIISPPFSRTFAASVMELLNNERVASAIQRD 668          
BLAST of Ggra8399.t1 vs. uniprot
Match: A0A6P3Y7X9 (negative elongation factor D n=13 Tax=Aculeata TaxID=7434 RepID=A0A6P3Y7X9_DINQU)

HSP 1 Score: 84.3 bits (207), Expect = 2.050e-13
Identity = 123/600 (20.50%), Postives = 252/600 (42.00%), Query Frame = 0
Query:    8 FKRPDALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDMIRAVVDWMN----DFHDGEQVLLDAMQLHLLGNVNTVIPTIDAALAREPESPSFVSEMLASPRWRNVLYEIAAQHRQSILTDRIYGEARLQQIGYSG--STISSADEVLEIVVEQLGVAMAS--KSYEEVDTAVRKIAVLATSSE---IYTFMILQFLVKMEHRSADLNSKSIYRYV--AQAVRKEAMNYIVNVSGESESTTTLWIYSMLILSDCSFHCYTIPETIVDALLGILHVSARIRLEKDVKVILHVYSTLLGQPHFATNRKFVTDTESIEDPKQKMLLILALCHSEIVDALLVRLFNPQSTNSGVEQANLKKRNCLCLLLAYSRTFIPLQHEEILRRLCNTETLEELNSLVRRARRDLTQVVKICDELKPGSLVSKANSKHIQHLVVAVKDPTIARGVLFWVEKRLRGGKDVRSLTITLPRYLGFLEVIAQAHCFLQRRVLEVIEEACIRNYPDLAESKVEQLRFTMMNSITGMIRFNMGEMIIYSITTNWVRDDSVEEEHLTRFIISMLRTISPPYHPILYSQMMEFLQDEKVIRAATADETAVELVNDF 594
            FK PD +       QL+ + +AGGN  +  + LS++Y     M   + +W+        D + ++ ++++  +L   +      D     E E+P++++EM+A P WR+++Y +A ++   ++ +  +    +   GY G  ++IS+A + +E+    L  A+A   ++ E   +++++ A +    +   +Y+ ++LQ L + E R   +  +        AQ  R +     + ++G + S       S + LS  S +                          D+ V+   YS+    P            E + +P+   LL         VDAL    F P     GV+  N + ++    LLAY+ +      ++   R  N + L+     + +       V  IC+  K GS    A+   +Q L  A++ P +  G++ WVE  +      +  T   P +L  L+ +  AH  L  +VL ++ +       +L      +++  +++ +  ++       ++  I   W R D+ +   +  F+  +L TI+PPY        +  +++E+ I      E+  +LV++F
Sbjct:   44 FKTPDYIMEPGIFAQLKRYFQAGGNPEQVIELLSKNYTACAQMANLLAEWLILAAVKVTDVQAMVENSLKDMILKTFDP--KKADKIFTEEGETPAWLTEMIAHPTWRSLIYRLAEEYPDCLMLN--FTIKLISDAGYQGEITSISTAAQQIEVFSRVLKTAIAGFLENTENWQSSIQECAKMVCHGQHTYVYSQVLLQILAQ-EPRGGFMMKRLSQEITKCAQQNRHDVTPITMALNGAASSPAACQALSSM-LSRNSLN------------------------PADITVLFRNYSSAEPPP-----------IELLRNPQFLELL---------VDAL----FKP-----GVK-INPEHKSKYIYLLAYAASVCETAPKKGNTRKINKDDLKTTTQAIEK-------VHNICNVNK-GSTELIAD---LQTLYSAIRFPVVGVGLIRWVECTVTEPSYFKLCTEHCPLHLALLDEVVTAHHLLHPKVLRLLVQLFESKQDELEILVQLEMKKMLIDRMINLLSRGCVVPVVCYIKQCWQRSDT-DVSLIRYFVTEVLETIAPPYSTEFVQLFLPMVENEE-ITGTMRGESENDLVSEF 570          
BLAST of Ggra8399.t1 vs. uniprot
Match: A0A6P4ZD76 (negative elongation factor D-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZD76_BRABE)

HSP 1 Score: 67.8 bits (164), Expect = 3.390e-8
Identity = 123/593 (20.74%), Postives = 226/593 (38.11%), Query Frame = 0
Query:    5 LAFFKRPDALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDMIRAVVDWMNDFHDGEQVLLDAMQLHLLGNVNTVIPT--IDAALAREPESPSFVSEMLASPRWRNVLYEIAAQHRQSIL---TDRIYGEARLQQIGYSGSTISSADEVLEIVVEQLGVAMASKSYEEVDTAVRKIAVLATSSE---IYTFMILQFLVKMEHRSADLNSKSIYRYVAQAVRKEAMNYIVNVSGESESTTTLWIYSMLILSDCSFHCYTIPETIVDALLGILHVSARIRLEKDVKVILHVYSTLLGQPHFATNRKFVTDTESIEDPKQKMLLILALCHSEIVDALLVRLFNPQSTNSGVEQANLKKRNCLCLLLAYSRTFIPLQHEEILRRLCNTETLEELNSLVRRARRDLTQVVKICDEL--KPGSLVSKANSKHIQHLVVAVKDPTIARGVLFWVEKRLRGGKDVRSLTITLPRYLGFLEVIAQAHCFLQRRVLEVIEEACIRNYPDLAESKVEQLRFTMMNSITGMIRFNMGEMIIYSITTNWVRDDSVEEEHLTRFIISMLRTISPPYHPILYSQMMEFLQDEKVI-RAATADET 586
            L  F   D +        L+ + + GG   +  D LS +Y  +  M+  + +W+         + D ++ HL   V         D   + E E+P+++ EM+A P+WR++ Y++A  + + ++   T ++  +A  Q    S ST S   EV   V+      +     E ++  + +I  +    E   +Y+  +LQ+L + E  SA        R ++Q ++K A +   +V+   E T  L   S    +  +  C      +  A               D+ V+  +YS     P            E I  P                +  +  LF P S      + N + +     LLAY+ +     HE   +        +EL S  +   R      K   E+  + G+L S             ++ P +A GVL W++  +      + LT   P +L  L+ I+  H  L   VL+ +       YPDL      +L+ T+++ +  ++       II  I     R D+ +   +  F+  ++  I+PPY        +  +++E +     T DE+
Sbjct:   44 LEAFGNRDYIMEPGIFNMLQRYFQHGGAPEQVIDLLSTNYTAVAQMVNVLAEWLILTGMKPTEVQDMVEDHLKELVLKHFDPKKADTIFSEEGETPAWLEEMIAHPKWRSLFYKLAEDYPECLMLNFTIKLISDAGYQGEITSVSTASQQVEVFSRVLRTSLTNLLEGGEEGLEKNLPEIVKMVCHGEHTYLYSQALLQYLKEEEGGSA-------VRRISQELQKAAKDLGRDVT---EMTLALGKASSYPRACQALACMLSRNALNPA---------------DITVLFKMYSGNNPPP-----------VEVIRSPL-------------FFELFMQALFKPGS------KLNPEHKPKYIYLLAYAASV----HETWKKNKRAAIAKDELKSTSQAIERATNLCCKERSEVVAELGTLYS------------CIRVPVVAMGVLRWIDWTVSEPSYFKLLTDHTPIHLALLDEISTCHPLLHPHVLKFLIRLLETTYPDLDVLVQLELKKTLLDRMVHLLSRGYVVPIIQYIKGCIDRGDT-DISLIRHFVTEVIDIIAPPYSSEFVQLFLPIIENEAITGNLRTPDES 564          
BLAST of Ggra8399.t1 vs. uniprot
Match: A0A197K4E2 (TH1 protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K4E2_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 2.930e-6
Identity = 36/147 (24.49%), Postives = 71/147 (48.30%), Query Frame = 0
Query:    5 LAFFKRPDALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDMIRAVVDWMNDFH-DGEQVLLDAMQLHLLGNVNTVIPTIDAALAREPESPS-FVSEMLASPRWRNVLYEIAAQHRQSILTDRIYGEARLQQIGYSGSTISSA 149
            L  F+ PD++      + +  + + GG      +ALS SY+G+P+M   + DW  +F  D   V+ + ++  L+   +    ++D     +      ++S M+  P WR+V+YE++ +H++    +  +   R+   GY G   S A
Sbjct:    2 LQSFQTPDSILERKITDNIAGYIKEGGQPLLLVNALSSSYVGVPEMCNLMSDWAREFDIDSVDVMQEVLKELLMERFDP--ESVDKEFKEDQRGQDDWLSMMIRHPFWRSVIYELSEEHQKCAFLN--FAIQRISDAGYQGEIASVA 144          
The following BLAST results are available for this feature:
BLAST of Ggra8399.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IKN41.070e-20251.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q5S74.380e-9032.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6P3Y7X92.050e-1320.50negative elongation factor D n=13 Tax=Aculeata Tax... [more]
A0A6P4ZD763.390e-820.74negative elongation factor D-like n=2 Tax=Branchio... [more]
A0A197K4E22.930e-624.49TH1 protein n=1 Tax=Linnemannia elongata AG-77 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006942TH1 proteinPFAMPF04858TH1coord: 6..232
e-value: 2.2E-13
score: 49.8
coord: 325..594
e-value: 6.1E-13
score: 48.3
IPR006942TH1 proteinPANTHERPTHR12144NEGATIVE ELONGATION FACTOR Dcoord: 8..583

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:473222..475024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8399.t1Ggra8399.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 473222..475024 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8399.t1 ID=Ggra8399.t1|Name=Ggra8399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=601bp
MADPLAFFKRPDALFHDDCAEQLRNFARAGGNVREACDALSESYLGLPDM
IRAVVDWMNDFHDGEQVLLDAMQLHLLGNVNTVIPTIDAALAREPESPSF
VSEMLASPRWRNVLYEIAAQHRQSILTDRIYGEARLQQIGYSGSTISSAD
EVLEIVVEQLGVAMASKSYEEVDTAVRKIAVLATSSEIYTFMILQFLVKM
EHRSADLNSKSIYRYVAQAVRKEAMNYIVNVSGESESTTTLWIYSMLILS
DCSFHCYTIPETIVDALLGILHVSARIRLEKDVKVILHVYSTLLGQPHFA
TNRKFVTDTESIEDPKQKMLLILALCHSEIVDALLVRLFNPQSTNSGVEQ
ANLKKRNCLCLLLAYSRTFIPLQHEEILRRLCNTETLEELNSLVRRARRD
LTQVVKICDELKPGSLVSKANSKHIQHLVVAVKDPTIARGVLFWVEKRLR
GGKDVRSLTITLPRYLGFLEVIAQAHCFLQRRVLEVIEEACIRNYPDLAE
SKVEQLRFTMMNSITGMIRFNMGEMIIYSITTNWVRDDSVEEEHLTRFII
SMLRTISPPYHPILYSQMMEFLQDEKVIRAATADETAVELVNDFQNSPPG
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006942TH1