Ggra8384.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8384.t1
Unique NameGgra8384.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length100
Homology
BLAST of Ggra8384.t1 vs. uniprot
Match: R7QD51 (Ribonucloprotein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QD51_CHOCR)

HSP 1 Score: 170 bits (431), Expect = 6.000e-53
Identity = 93/128 (72.66%), Postives = 96/128 (75.00%), Query Frame = 0
Query:    1 MTKQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV-----------------------------RNLRDEIERLLI 99
            M  QE NPKAVPMADAEL+VKILDLVQQ+ANY+QMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV                             RNLRDEIERLLI
Sbjct:    1 MAAQEPNPKAVPMADAELTVKILDLVQQAANYKQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKVSLGRACGVPRAVIACSVLTDEGSAISAQVRNLRDEIERLLI 128          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A7S2FW40 (Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2FW40_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.920e-44
Identity = 71/83 (85.54%), Postives = 79/83 (95.18%), Query Frame = 0
Query:    5 EVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV 87
            EVNPKA P+ADAE++VKILDLVQQ+ NY+Q+KKGANEATKTLNRG SEF+V+A DAEPLEILLHLPLLCEDKNVPYVFVPSKV
Sbjct:    3 EVNPKAYPLADAEMTVKILDLVQQACNYKQLKKGANEATKTLNRGISEFVVLAADAEPLEILLHLPLLCEDKNVPYVFVPSKV 85          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A0L0FMD7 (Ribonucloprotein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FMD7_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 1.570e-43
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 0
Query:    5 EVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            EVNPKA P+ADAEL+V ILDLVQQ+ANY+Q+KKGANEATKTLNRG SEFIVMA D EP+EILLHLPLLCEDKNVPYVFVPSK
Sbjct:    3 EVNPKAYPLADAELTVTILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSK 84          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A7S4NMY1 (Ribonucloprotein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NMY1_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 6.590e-43
Identity = 76/123 (61.79%), Postives = 88/123 (71.54%), Query Frame = 0
Query:    6 VNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK-----------------------------VRNLRDEIERLLI 99
            VNPKA P+A  EL++KILD+VQQ+ANY+Q+K+GANEATKTLNRG +EFIVMA D EPLEILLHLPLLCEDKNVPYVFVPSK                             ++NLRDEIE+LLI
Sbjct:    5 VNPKAFPLASPELTLKILDIVQQAANYKQLKRGANEATKTLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKAALGRSSDVSRPVIACSVVANESSQLRSQIKNLRDEIEKLLI 127          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A835Z1Z7 (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 6.590e-43
Identity = 70/83 (84.34%), Postives = 78/83 (93.98%), Query Frame = 0
Query:    5 EVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV 87
            E+NPKA P+A A+L+V ILDLVQQ+ANY+Q+KKGANEATKTLNRG SEFIVMA DA+PLEILLHLPLLCEDKNVPYVFVPSKV
Sbjct:    4 EINPKAYPLAGADLTVTILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADADPLEILLHLPLLCEDKNVPYVFVPSKV 86          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A022QHN0 (Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QHN0_ERYGU)

HSP 1 Score: 144 bits (363), Expect = 1.370e-42
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MTKQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            MT   VNPKA P+ADA+L++ ILDLVQQ ANY+Q+KKGANEATKTLNRG SEF+VMA DAEPLEILLHLPLL EDKNVPYVFVPSK
Sbjct:    1 MTADAVNPKAYPLADAQLTITILDLVQQGANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSK 86          
BLAST of Ggra8384.t1 vs. uniprot
Match: R7U1Q6 (Ribonucloprotein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U1Q6_CAPTE)

HSP 1 Score: 144 bits (363), Expect = 1.370e-42
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 0
Query:    1 MTKQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            M   EVNPKA P+AD +L+VKILDLVQQ+ANY+Q++KGANEATKTLNRG SEFIVMA DAEPLEILLHLPLLCEDKNVPYVFV SK
Sbjct:    1 MADGEVNPKAYPLADPQLTVKILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSK 86          
BLAST of Ggra8384.t1 vs. uniprot
Match: A0A7S1CD40 (Ribonucloprotein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD40_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.500e-42
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0
Query:    3 KQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV 87
            K  VNPKA P+ADAEL VKILDL+QQ++NY+Q+KKGANEATKTLNRG SE IV+  DAEPLEILLHLPLLCEDKNVPYVFVPSKV
Sbjct:    6 KDGVNPKAFPLADAELVVKILDLIQQASNYKQLKKGANEATKTLNRGISELIVLTADAEPLEILLHLPLLCEDKNVPYVFVPSKV 90          
BLAST of Ggra8384.t1 vs. uniprot
Match: I3NMQ2 (Ribonucloprotein n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=I3NMQ2_HEVBR)

HSP 1 Score: 144 bits (362), Expect = 1.940e-42
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 0
Query:    1 MTKQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSK 86
            MT + VNPKA P+ADA+L++ ILDLVQQ+ANY+Q+KKGANEATKTLNRG SEFIVMA D EPLEILLHLPLL EDKNVPYVFVPSK
Sbjct:    1 MTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSK 86          
BLAST of Ggra8384.t1 vs. uniprot
Match: M4BL53 (Ribonucloprotein n=38 Tax=Oomycota TaxID=4762 RepID=M4BL53_HYAAE)

HSP 1 Score: 144 bits (362), Expect = 2.000e-42
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 0
Query:    6 VNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQSEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKV 87
            VNPKA P+ADA+L+V ILDLVQQ+ NY+Q+KKGANEATKTLNRG SEFIVMA D EPLEILLHLPLLCEDKNVPYVFVPSKV
Sbjct:    7 VNPKAYPLADAKLTVSILDLVQQATNYKQIKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKV 88          
The following BLAST results are available for this feature:
BLAST of Ggra8384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QD516.000e-5372.66Ribonucloprotein n=2 Tax=Rhodymeniophycidae TaxID=... [more]
A0A7S2FW401.920e-4485.54Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 ... [more]
A0A0L0FMD71.570e-4386.59Ribonucloprotein n=1 Tax=Sphaeroforma arctica JP61... [more]
A0A7S4NMY16.590e-4361.79Ribonucloprotein n=1 Tax=Paramoeba aestuarina TaxI... [more]
A0A835Z1Z76.590e-4384.34Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303... [more]
A0A022QHN01.370e-4281.40Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=143... [more]
R7U1Q61.370e-4282.56Ribonucloprotein n=1 Tax=Capitella teleta TaxID=28... [more]
A0A7S1CD401.500e-4282.35Ribonucloprotein n=1 Tax=Bicosoecida sp. CB-2014 T... [more]
I3NMQ21.940e-4281.40Ribonucloprotein n=4 Tax=Hevea brasiliensis TaxID=... [more]
M4BL532.000e-4285.37Ribonucloprotein n=38 Tax=Oomycota TaxID=4762 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..99
NoneNo IPR availablePANTHERPTHR23105:SF158NHP2-LIKE PROTEIN 1coord: 4..87
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 4..87
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 70..80
score: 66.53
coord: 35..49
score: 45.15
coord: 54..67
score: 43.51
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 8..21
score: 55.71
coord: 21..36
score: 56.25
coord: 38..48
score: 87.27
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 22..87
e-value: 4.1E-18
score: 64.9
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 1..94
e-value: 1.8E-37
score: 129.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 5..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:299804..300280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8384.t1Ggra8384.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 299804..300280 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8384.t1 ID=Ggra8384.t1|Name=Ggra8384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=100bp
MTKQEVNPKAVPMADAELSVKILDLVQQSANYRQMKKGANEATKTLNRGQ
SEFIVMAGDAEPLEILLHLPLLCEDKNVPYVFVPSKVRNLRDEIERLLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like