Ggra8380.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8380.t1
Unique NameGgra8380.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Homology
BLAST of Ggra8380.t1 vs. uniprot
Match: A0A2V3IGB5 (RPA-interacting protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGB5_9FLOR)

HSP 1 Score: 266 bits (679), Expect = 1.970e-87
Identity = 137/216 (63.43%), Postives = 163/216 (75.46%), Query Frame = 0
Query:    1 MESPDRAKRPYKWRRTMAPPEEWRQRLLKQCLDRIKSDRENDRHNRRKLRMRIIEEEAARLRPEEEYLSDDELEALIADLEAVMDAERREAERKLLEAXXXMIQDFERLGREQAQLDTELFAFHEESDAANSAQVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHANCGSSPKFDVRNSFGTFLWAHCCCGEDLIVL 216
            MES +   RPYKW+RTMAPPEEWR+RLL+QCL RIK  R+ + H+RRK R+R+IEEEAA L  E  +L D++LEALIADL   MDAERRE        XXX          E A LD+EL++F E+    +S+ ++CPVCERG LHVR+GV+FCRCGVR+DGGTYDNLT++IVKQRLEQVFA HANCGSSPKF VR+ FG FLW HC CGED IVL
Sbjct:    1 MESLEEVGRPYKWKRTMAPPEEWRKRLLQQCLKRIKHTRDEELHSRRKARLRMIEEEAALLNSEPTHLCDEDLEALIADLXXAMDAERREXXXXXXXXXXXXXXXXXXXXXEVADLDSELYSFQEDRFREDSSDLICPVCERGSLHVREGVVFCRCGVRVDGGTYDNLTTDIVKQRLEQVFAKHANCGSSPKFQVRDMFGRFLWVHCRCGEDCIVL 216          
BLAST of Ggra8380.t1 vs. uniprot
Match: R7QD60 (RPA_interact_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD60_CHOCR)

HSP 1 Score: 139 bits (350), Expect = 1.280e-37
Identity = 93/218 (42.66%), Postives = 122/218 (55.96%), Query Frame = 0
Query:    9 RPYKWRRTMAPPEEWRQRLLKQCLDRIKSDRENDRHNRRKLRMRIIEEEAARLRPEEEY---LSDDELEALIADLEAVMDAERREAERKLLEAXXXMIQDFERLGREQAQLDTELFAFHEESDAAN-SAQVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHAN---CGS-SPKFDVRNSFG-TFLWAHC-CCGEDLIVL 216
            R +KW RT AP  EWR+RLL+ C+ R+K++RE    + R  R+ I+ EEA+ LR        LS DE+  L+ADLE  +  ERR AE   +          + L    A L  EL AFH   +  + S+ V CP+C R  L VR GV+FC CG+R+DGGTYDNLT ++V+ RL QV   H+    C   +P F     FG TF+ A C  C  D IVL
Sbjct:    8 RRHKWSRTQAPCAEWRKRLLQNCVARVKAEREETVSSARARRLAILAEEASHLRNAGNRALELSSDEINTLVADLEEAITKERRAAEEAAIREHR------QSLAETDADL-RELVAFHTRFEGVSTSSAVFCPLCTRDVLQVRHGVLFCSCGLRLDGGTYDNLTLDVVRARLAQVLDEHSKRICCQKGAPSFSCHERFGFTFMHARCDSCRMDSIVL 218          
BLAST of Ggra8380.t1 vs. uniprot
Match: A0A2T7PH44 (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PH44_POMCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.970e-7
Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 0
Query:   16 TMAPPEEWRQRLLKQCLDRIKSDRENDRHNRRKLRMRIIEEEAARLRPEEEYLSDDELEALIAD-LEAVMDAERREAERKL-------LEAXXXMIQDFER-LGREQAQLDTELFAFHEESDAANSA-----------QVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHANCGSSPKFDVRNSFG 200
            T AP   WR    ++CL R+   R+     RR L   I+E++       ++  +   ++ L++D L+   D ++ +AE ++       ++    + +D ++ L  E+ +L  E   + E   A  +A           +++CP+CE+  L   +GVIFC+CG+RID    D++  E V+Q+L+     H +C + P+F V   +G
Sbjct:   23 TSAP---WRDAYRERCLKRLHESRDVLISKRRGLDSDILEKD-------QDTKNSQFIKTLMSDELKMFRDEKKEDAEMEMWDPDCGEIDVMLSVFEDIQQELRMEEVRLLKEYEVYAESLRAEEAALCSAIEQLGRGEIICPLCEKHSLLENKGVIFCKCGLRIDT-EQDSIGLEFVRQQLQSAGDLH-HCETHPQFSVVEDYG 215          
BLAST of Ggra8380.t1 vs. uniprot
Match: RPA-interacting protein-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D726F94 (RPA-interacting protein-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D726F94)

HSP 1 Score: 60.1 bits (144), Expect = 3.280e-7
Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 0
Query:   16 TMAPPEEWRQRLLKQCLDRIKSDRENDRHNRRKLRMRIIEEEAARLRPEEEYLSDDELEALIAD-LEAVMDAERREAERKL-------LEAXXXMIQDFER-LGREQAQLDTELFAFHEESDAANSA-----------QVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHANCGSSPKFDVRNSFG 200
            T AP   WR    ++CL R+   R+     RR L   I+E++       ++  +   ++ L++D L+   D ++ +AE ++       ++    + +D ++ L  E+ +L  E   + E   A  +A           +++CP+CE+  L   +GVIFC+CG+RID    D++  E V+Q+L+     H +C + P+F V   +G
Sbjct:   23 TSAP---WRDAYRERCLKRLHESRDVLISKRRGLDSDILEKD-------QDTKNSQFIKTLMSDELKMFRDEKKEDAEMEMWDPDCGEIDVMLSVFEDIQQELRMEEVRLLKEYEVYAESLRAEEAALCSAIEQLGRGEIICPLCEKHSLLENKGVIFCKCGLRIDT-EQDSIGLEFVRQQLQSAGDLH-HCETHPQFSVVEDYG 215          
BLAST of Ggra8380.t1 vs. uniprot
Match: A0A7L1SKR4 (RIPA protein (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7L1SKR4_ARAGA)

HSP 1 Score: 58.9 bits (141), Expect = 4.280e-7
Identity = 58/213 (27.23%), Postives = 108/213 (50.70%), Query Frame = 0
Query:    1 MESPDRAKRPYKWRRTMAPPEEWRQRLLKQCLDRIKSDREN--DRHNRRKLRMR---------IIEEEAARLRPEEEYL-----SDDELEALIADLEAVMDAERREAERKLLEAXXXMIQDFERLGREQAQLDTE-LFAFHEESDAANSAQVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHAN-CGSSPKFDV 195
            ME+P   +   +++   APP  W++   ++C++R++S R    DR+ +   R R         ++E+E   L+  +E L     +++ L  ++ D + +  A   E +R+L+     +I+++ER      Q D E L A  +  DA++  +V+CPVC +  L VR   IFC+CG+ I   +   +T   ++  LE     H++ C  +P+F V
Sbjct:    2 MEAPPPRRHRARYKGPAAPP--WKETYRRRCMERLRSSRAKLLDRYRQAGERPRGPGTLLVQEVMEQEWQTLQAAQESLPALGGTEEALAQMLEDPDEL--AVLEEIQRELILQEQSVIEEYER----SLQFDEECLNAMLDGLDASD--KVICPVCRKNNLTVRNHFIFCQCGLYI---STQGMTEGKLRSLLENTLTEHSHRCFHNPEFTV 201          
BLAST of Ggra8380.t1 vs. uniprot
Match: R7US38 (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7US38_CAPTE)

HSP 1 Score: 56.2 bits (134), Expect = 4.030e-6
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 0
Query:  133 AQVLCPVCERGKLHVRQGVIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHAN-CGSSPKFDVRNSFG 200
            + V+CP+C++ K+ +  GVIFCRCG++I+    D ++   VK+ ++     H + C   PKF V NS G
Sbjct:  135 SDVVCPICQKSKIFMSSGVIFCRCGLKINT-EQDCISLSTVKENIDFGLQQHGSTCDKVPKFSVFNSVG 202          
The following BLAST results are available for this feature:
BLAST of Ggra8380.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IGB51.970e-8763.43RPA-interacting protein n=1 Tax=Gracilariopsis cho... [more]
R7QD601.280e-3742.66RPA_interact_C domain-containing protein n=1 Tax=C... [more]
A0A2T7PH441.970e-726.34Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
RPA-interacting protein-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D726F943.280e-726.34RPA-interacting protein-like isoform X1 n=2 Tax=Po... [more]
A0A7L1SKR44.280e-727.23RIPA protein (Fragment) n=9 Tax=Neognathae TaxID=8... [more]
R7US384.030e-637.68Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..109
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 136..208
e-value: 4.2E-15
score: 56.1
IPR028156RPA-interacting proteinPANTHERPTHR31742RPA-INTERACTING PROTEIN RPAINcoord: 4..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:287926..288576 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8380.t1Ggra8380.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 287926..288576 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8380.t1 ID=Ggra8380.t1|Name=Ggra8380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MESPDRAKRPYKWRRTMAPPEEWRQRLLKQCLDRIKSDRENDRHNRRKLR
MRIIEEEAARLRPEEEYLSDDELEALIADLEAVMDAERREAERKLLEAEE
KMIQDFERLGREQAQLDTELFAFHEESDAANSAQVLCPVCERGKLHVRQG
VIFCRCGVRIDGGTYDNLTSEIVKQRLEQVFANHANCGSSPKFDVRNSFG
TFLWAHCCCGEDLIVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028156RIP