Ggra8373.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8373.t1
Unique NameGgra8373.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1196
Homology
BLAST of Ggra8373.t1 vs. uniprot
Match: A0A2V3IGA1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGA1_9FLOR)

HSP 1 Score: 924 bits (2389), Expect = 2.070e-316
Identity = 543/1201 (45.21%), Postives = 765/1201 (63.70%), Query Frame = 0
Query:    1 MSPVPRRTSRKLPLTSQQLSAFDKARKAKTVSERRKAVSAIVSASFSDGISLETDSAKYVLNRLLNAISVSSNQTRLNSSTALIAFIRALRKAAPKTTEKQIISAVSQLYAIDGSFQVDYRSGERERAIGTITACAALVRAYNGKLQPLTCKEIVSLLRPCVLGNCAKWQLANSCVHIVCEFLRAGDSTAIQDACAKSLWQWCEERKNYEDGLSLVLNLLQLGIASQNAVKRIYPDLDSIAKALATTFETGFSYHSGDLG--ADLVPLSWKLALNYVFSSDGQEHLGSPEKFWKRVVAEDLIHSGGSMAKKILALDLLHLALPLLKEQSTFESIFDSSLSSLIIILRSQGKAHQGDIVVRGINF-PKAQERMNESLSVLGESIAEWILVSASEKSASLW-QLFFLWAVRNGVMPHVLSPGKLNEILGSIKIDNVRRLFCVMINEFACPESQKSRLSVQATRLQTLGFVFKLASMFPSLVNDVVRIFLFYAVCDDSCYQSGNLSEDEELTLDVYKPPSDVTLVHGLLPVPSPAISHDVATSVFSKLVGFVSENQNTIDGHASLVSFCYHHLKLMMSWKWVKHRNHHDIDDDS-DGGVSGRQEVLETHVEPILISLSKARQ-HGQKGFLDALQLLVEFVGLVLLKPCLGSKRQIEKSSEDRSFCVSLTQELSQIVSLLQKAKTMDADKERDV--EMEDSDRQPDATERVTKLLCEICTRCETIPLQIALRVIDDMNHSVDDRVVAVLFDAMEETLHSNENLADSGIDEDSXXXXXXXXXXXXXXXXXXXXXXXXXXDDEGREKAKIGTSLSNQDEEIANTKPAENASGEESASNSDIDMDIDDEDPAVLEALDKRLATHMKLVSEEKNANSRRKRSPQAKFTAVRRILSIIEEVAKGLRLRLASNNDDGRTGIVFLDLHCRLYEFVMNVTNFNGQFLGNICSIVSKQMSLPLSLFHDKVADRDTAIQIAGRFLNTLSACKVERSLSDSELQTISKSAACIVGVAAMLSDNNYEQFFPHYQKLVEIMVKPWTPMLRPRILSSFFIKAPSLSVSLLSNVVENLDGTETTKQQLARGSEIILQLARLTSEQEGIPAEKRKEFWTSFNQFLQKPCDTEFKGWNARGIDNLVKAMLLGRAQKLLVLSASGMEGFHVAVNTIAKGKRRQKLQKLLRSTSIEVESGELLGK-ASLRDDVDQAKKRVSKKR 1192
            MSP P +  RKLPL+ Q LSA D+AR AKT +E+R AV+ I+SA+F DG+SL+ +S +YV+ RLLN ISVS  +TR+N S  L+AFIRAL  A P +T+++++S +SQ+Y  DGSF++DY  GERERA+GT+TACAALVRAY+GKLQ   CK+ + LLR C + + AKW L N+ V ++ E LR  ++  +QD+CAK+LWQWCEERK+Y+DGL LVL L+ L IA+ NA++RIYPDLDS+AK L + F TG+S  +GD    A LVPLSW+LA+ Y FS   +EHLG P  FWK VV E L+HSGGS  KK+LAL+LLHLA+ ++ +++   SIF+SSL+SLI++L S G     +IV +     P+ Q R+  SLS LGE+       S   + +  + +   LW VRNGV+   L P KL+  L +++   V ++F  ++NEFA P  + SRLSVQ+ R Q L  +FK AS F  L  D+VRI L YA+C+DS +QS   ++ + +  DVY+P S+ +L++G++P+P+P +S++VA +VF +LV F+ E+Q+    H SL SFCY  L  ++S +      H  +   S   GV G  E++ T+VEPI  +L+K R         DA+QL+ EF+ L +  P + +K    +  ED  FC+S+ Q L +IV L  K      ++E D   + E+    P++ ER+T +LCE+    E  P Q+ALR ++ M+ S+DDRVVAVLFDA+E  L +    ++   D DS    XXXXXXXXXXXXX           E R + K   S    DE +      ++ + E SAS  ++DMD+D+EDPAVL+ALD RLA HMKL+ EEK + ++ KR+ + ++T V R+L ++EEVAK LRLRL+S+  DGRTG+VFLDLHCRLYEF +     NG+FLG +CSI+SKQM LPL +  + VAD  TA +IA RFL +L  CK E+ L+  E+Q  S+SA CIVG AA L    YE F  HY++LVE+M+K  + + RP ILSS+F KAP LS+S+   V   L  +E ++ Q    S I+L+L +   +     A + K FW S N +L+  C   F+GWN  GI+N+++ +LLG   K +    + +     A  T  + K RQ+L KLLR+        E     AS  D+ + +K++  KKR
Sbjct:    1 MSPAPSQIRRKLPLSRQGLSALDRARLAKTSAEKRHAVNDILSAAFVDGVSLDKESVRYVMQRLLNGISVSVTETRINFSVVLVAFIRALEDANPNSTQQKVMSFISQIYGADGSFEIDYAGGERERALGTVTACAALVRAYDGKLQHSCCKQTILLLRHCCVASAAKWSLGNAAVRVITEVLRTANTKELQDSCAKNLWQWCEERKDYDDGLCLVLTLMDLKIAAPNAIRRIYPDLDSLAKPLMSIFGTGYSIFAGDAEDEAGLVPLSWQLAITYAFSDSSREHLGGPGTFWKHVVIEKLVHSGGSAEKKLLALELLHLAVSMIPDETAHNSIFESSLASLIVVLSSPGNRGGENIVFKANRVAPEVQARLKRSLSRLGETFTTGFFQSPLRRESDTFVEHLVLWLVRNGVVSQTLPPPKLDNFLNALEKKEVAKVFSALVNEFASPRQESSRLSVQSMRTQMLRLIFKFASTFTFLSKDMVRIMLTYAICEDSYHQSLTSAKRKPMPFDVYEPLSEQSLMYGVVPIPTPPLSNEVARNVFGRLVTFMCEHQSPEQQH-SLSSFCYESLSFILSLE-ASDGTHCVLRARSKQDGVDGL-ELIRTYVEPIFKNLAKGRGVRFDASLSDAIQLVAEFIALSMFNPVISTKEG--EDGEDDDFCLSVAQRLLEIV-LEVKMDEDQTNRENDDHGDKEERGEAPNSVERMTDILCELSGEPEAFPHQVALRAVEAMSSSLDDRVVAVLFDAIESFLLAGGTSSEKDEDVDSLQEAXXXXXXXXXXXXXSEDARIAP---ENRSQRKQFDSDKQLDERLQALSDFQDNASESSAS--EVDMDVDEEDPAVLDALDNRLAVHMKLLMEEKKSTTKSKRAREFRYTQVGRVLKLVEEVAKVLRLRLSSDKADGRTGLVFLDLHCRLYEFALGNLGSNGRFLGQVCSIISKQMILPLPVILNNVADAQTAKEIADRFLTSLLNCKSEKPLTTLEVQAASRSAGCIVGTAAALLKKQYEPFSNHYKELVEVMLKKSSHISRPGILSSYFNKAPLLSLSVFPVVERTLKDSEASRTQRTNASAILLELTKAIKQASCQKAREVKAFWNSTNDYLRHQCSVGFEGWNDSGIENIIQTVLLGMNLKCIEDMDAILPALVKANETKVRKKDRQRLSKLLRAAKNSQNPNENSDNTASHNDEKENSKEKSGKKR 1190          
BLAST of Ggra8373.t1 vs. uniprot
Match: R7QC70 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC70_CHOCR)

HSP 1 Score: 278 bits (711), Expect = 1.270e-74
Identity = 263/955 (27.54%), Postives = 427/955 (44.71%), Query Frame = 0
Query:  247 TFETGFSYHSGDLGAD---LVPLSWKLALNYVFSSDGQEHLGSPEKFWKRVVAEDLIHSGGSMAKKILALDLLHLALPLLKEQSTFESIFDSSLSSLII-ILRSQGKAHQGDIVVRGINFPKAQERMNESLSVLGESIAEWILVSASEKSASLWQL--FFLWAVRNGVMPHVLSPGKLNEILGSIKIDNVRRLFCVMINEFACP-ESQKSRLSVQA-----TRLQTLGFVFKLASMFPSLVNDVVRIFLFYAVCDDSCYQSGNLSEDEELTLDVYKPPSDVTLVHG-LLPVPSPAISHDVATSVFSKLVGFVSENQNTIDGHASLVSFCYHHLKLMMSWKWVK---HRNHHDIDDDSDGGVSGRQEVLETHVEPI--LISLSKARQHGQKGFLDALQLLVEFVGLVLLKP-CLGSKRQ---IEKSSEDRSFCVSLTQELSQIVSLLQKAKTMDADKERDVEMEDSDRQPDATERVTKLLCEICTRCETIPLQIALRVIDDMNHSVDDRVVAVLFDAMEETLHSNE---NLADSGIDEDSXXXXXXXXXXXXXXXXXXXXXXXXXXDDEGREKAKIGTSLSNQDEEIANTKPAENASGEESASNSDIDMDIDD-EDPAVLEALDKRLATHMKLVSEEKNANSRRKRSPQAKFTAVRRILSIIEEVAKGLRLRLASNNDD-GRTGIVFLDLHCRLYEFVMNVTNFNGQFLGNICSIVSKQMSLPLSLFHDKVADRDTAIQIAGRFLNTLSACKVERSLSDSELQTISKSAACIVGVAAMLSDNNYEQFFPHYQKLVEIMVKPWTPMLRPRILSSFFIKAPSLSVSLLSNVVENLDGTETTKQQLARGSEIILQLARLTSEQEGIPAEKRKEFWTSFNQFLQKPCDTEF-----KGWNARGIDNLVK----AMLLGRAQKLLVLSASGMEGFHVAVNTIAKGKR-RQKLQKLLRSTSI 1164
            TFE GFS        D   ++P  W+ A+ Y+ +S+G EHLGS   FWK VV   L+    S  KK+LAL+L+ L    + +  +F  +F+SSL+S++  IL SQ        + +G    +A   +  S   LG+ + + I  S          L  F  W+V  G+   +L P  L E+L S+   + + LF  ++ EFA P  SQKS    ++      R   L F+F LA    SL  DVVR+   Y+V      +         + LD ++   D+ + +G +LP   P +  D A   F +L  F++  Q   D    L+ F    L    S + +     R      ++ +G      EV  T V+ +  L  LS   +    G   +L+L+  ++ + L  P C   KR    I+ S+++ S        L+  ++        + D   D   +  +  P  TE + +L+ ++C R       +++  I+ ++  +DD VV+V FDA++  L        L     D +S                           D+G +  + GTS ++                                EDPAVL   DKR+  H++L+ EEK   ++R+   +++F     +L  +E +A+ LR+RL    +  GR  IVFLDLH RLYEFV+     N +FL  +C +VSKQM +   +    V+D+ T + I  RF   L +C  +R +   E +TIS+SA  ++ VA+ LSD +Y  +   Y++++  M+KP +    P IL SF  KAP LS+ L + V + L   +  K      SE++L L+    + +    E  K FW      L + C  +      K W++ G  N++K    A+  GR  +  V+S         ++ T+A  +R R +L K LR  ++
Sbjct:    3 TFEGGFSSLGSSANGDNKYVIPSVWRSAVRYIITSEGSEHLGSISHFWKSVVLGKLVRGSRSGEKKLLALELIPLVFAEVHDLESFNIVFESSLASMVAAILGSQKMGMTRAPLRKGRTSEEALAYLTNSAKSLGKRLVKAIFESEGTDRNGQPMLCEFLKWSVTGGIWNMLLPPALLAEVLASLSPADEKTLFSNIVREFAQPYRSQKSLDGGESKSRIHNRASLLRFLFTLARQRHSLAKDVVRVVALYSVFHAEQNRPVGPDLQPLMRLDNFQN-RDLCVGYGTVLPQLLPDLPLDTAALAFRRLTDFLASQQRG-DRTEDLLLFTVKLLSSASSSQGLSLNLRRTFGSAREEEEGETKSL-EVQSTAVKVVERLSILSSTSESS--GLSKSLKLIAAYLCIGLYDPLCREGKRSVTGIQDSTQELSGLFKTIDNLADHLTETAAEVPRENDSPSDGREDGENSLPTPTEYIAQLIADLCGRDGNRFRHVSVMAIEALDQKLDDSVVSVFFDAIDSYLSGKVVRVALHRPARDPESSVLDINKGEDEEMEERNSEDEKVRSEYDQGMDNVEPGTSQASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDPAVLADFDKRIGAHLRLLKEEKKEANQRRLQRESRFXXXXXVLDALEAIARKLRIRLEKTQEACGRLPIVFLDLHVRLYEFVLGDDK-NFRFLKQVCRVVSKQMLIAAPVLVSHVSDKQTVLDIVDRFFKILRSCPTDRQIPALEARTISRSAGSLMNVASELSDGSYTSYLTAYEEILVSMMKPGSHFWIPDILGSFIQKAPLLSLKLSTIVAKTLQSRDAPKSTRQTASEVLLGLSVSALQLDDSSPEVDK-FWKMVEACLLQQCTQQCTRHIGKQWSSEGYCNMIKVAANAIRAGRFDRDDVVSQ-----LKASIETMALPQRERTRLLKSLRIPTV 945          
The following BLAST results are available for this feature:
BLAST of Ggra8373.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGA12.070e-31645.21Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QC701.270e-7427.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1174..1194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 784..799
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 754..783
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 748..835
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 800..824
IPR007015DNA polymerase V/Myb-binding protein 1APFAMPF04931DNA_pol_phicoord: 59..873
e-value: 1.4E-24
score: 86.3
IPR007015DNA polymerase V/Myb-binding protein 1APANTHERPTHR13213MYB-BINDING PROTEIN 1A FAMILY MEMBERcoord: 10..1109
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 32..490

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:265434..269021 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8373.t1Ggra8373.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 265434..269021 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8373.t1 ID=Ggra8373.t1|Name=Ggra8373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1196bp
MSPVPRRTSRKLPLTSQQLSAFDKARKAKTVSERRKAVSAIVSASFSDGI
SLETDSAKYVLNRLLNAISVSSNQTRLNSSTALIAFIRALRKAAPKTTEK
QIISAVSQLYAIDGSFQVDYRSGERERAIGTITACAALVRAYNGKLQPLT
CKEIVSLLRPCVLGNCAKWQLANSCVHIVCEFLRAGDSTAIQDACAKSLW
QWCEERKNYEDGLSLVLNLLQLGIASQNAVKRIYPDLDSIAKALATTFET
GFSYHSGDLGADLVPLSWKLALNYVFSSDGQEHLGSPEKFWKRVVAEDLI
HSGGSMAKKILALDLLHLALPLLKEQSTFESIFDSSLSSLIIILRSQGKA
HQGDIVVRGINFPKAQERMNESLSVLGESIAEWILVSASEKSASLWQLFF
LWAVRNGVMPHVLSPGKLNEILGSIKIDNVRRLFCVMINEFACPESQKSR
LSVQATRLQTLGFVFKLASMFPSLVNDVVRIFLFYAVCDDSCYQSGNLSE
DEELTLDVYKPPSDVTLVHGLLPVPSPAISHDVATSVFSKLVGFVSENQN
TIDGHASLVSFCYHHLKLMMSWKWVKHRNHHDIDDDSDGGVSGRQEVLET
HVEPILISLSKARQHGQKGFLDALQLLVEFVGLVLLKPCLGSKRQIEKSS
EDRSFCVSLTQELSQIVSLLQKAKTMDADKERDVEMEDSDRQPDATERVT
KLLCEICTRCETIPLQIALRVIDDMNHSVDDRVVAVLFDAMEETLHSNEN
LADSGIDEDSDESEEDESLTTSDCSDSDESESEVKVDDEGREKAKIGTSL
SNQDEEIANTKPAENASGEESASNSDIDMDIDDEDPAVLEALDKRLATHM
KLVSEEKNANSRRKRSPQAKFTAVRRILSIIEEVAKGLRLRLASNNDDGR
TGIVFLDLHCRLYEFVMNVTNFNGQFLGNICSIVSKQMSLPLSLFHDKVA
DRDTAIQIAGRFLNTLSACKVERSLSDSELQTISKSAACIVGVAAMLSDN
NYEQFFPHYQKLVEIMVKPWTPMLRPRILSSFFIKAPSLSVSLLSNVVEN
LDGTETTKQQLARGSEIILQLARLTSEQEGIPAEKRKEFWTSFNQFLQKP
CDTEFKGWNARGIDNLVKAMLLGRAQKLLVLSASGMEGFHVAVNTIAKGK
RRQKLQKLLRSTSIEVESGELLGKASLRDDVDQAKKRVSKKRKLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007015DNA_pol_V/MYBBP1A
IPR016024ARM-type_fold