Ggra8365.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8365.t1
Unique NameGgra8365.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length633
Homology
BLAST of Ggra8365.t1 vs. uniprot
Match: A0A2V3IGC8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGC8_9FLOR)

HSP 1 Score: 812 bits (2097), Expect = 1.720e-289
Identity = 406/622 (65.27%), Postives = 483/622 (77.65%), Query Frame = 0
Query:    1 MRCPSCDNERLSASDDGALVCDACGEQIAGFQEEELDIALSGTAVTNRQSQSSQARATRRSIQLRN-EAPVVQRTRPPDDILLCEGVFILSKAVVQTLIRLRYCPSRVVQPLFDIVSCWVARRHAGAHRFGTSHVGFQQFHVLSLVCLACLYVRAPMLPRDLCRLVATRQLPYFAVLKTLFPPSFRESAAIRSAFTPTKMPIAKHVARVANELATDDYAWPPLAKFFQRNVPVRTKLSAYHAWGAKCTFVPTTFPVPHLHITILRLSRLLGLPDQFGARVLRFMELRLVAVKMARLLNHQTDGPYDDSRIDAYHANHIPNYLDPTRPFSKVIHPQRDLYGFPTDHALQADFINTMRLCYGTRKLRRKADAAKLSEREQKLRHEWQRCEDAMLRWLQIGNPEDIDNVAWTAFSPQAISSTSGACLRRLAALVDDIHAEKGEQDPQLWGRFINAFREIGETSVEQSEDATVNFVEDEFTHQVEETECMYDVDRICPGLTDSVNEAVKNMTEERRLLDSLDLRDADGEPVNREPIRRWGLRRSSKTRPLANRKRLYSKIISSYDYFYEPAGIGLAWTIMNRFFSGSNVVLEGMKLSQSEDVHNDQMRRACDRTLGVVIRYILGLK 621
            M+CPSC   RLS + DGALVCD CGEQIAGFQEEE+D ALSGTAVTNR SQSSQARATR+S++ R+     V   +P D+ILLCEGVFIL+KA+   LIRLRY   R++ PLF++++CWV RRHAGAHR+GTSH GFQQ+HVLSL+CLA LY+RAPMLPRDLCRLVATRQ+PYFAVL T+FP  F ++AAIR AFTPTK P+AKHV RVANELA+D +AWPPL KFFQ N P+  + +  + WG+K T +PT FPV HLHI+ILRLSRLLGLPD FGARVLRFMELRL+AVKMAR+LN +  GP+DDSR+D+YH NHIPNYL  TRPFSKVI  +RDLYGFPTD +LQ DFINTMR+CY  RKLR      +LS +E+  R EW++C+ AMLRWL +G+ EDIDNV WTA SP+ IS+  G  +R  A LVD+IH EKGE +P+LWGR +NAF+EIGE+      D  + F   E    V E ECMYD++RI  G+   V   V +M EER LLDSLDLR   GEPV R PIR+W     +  R + NRK LY K++S YDY +EP G+GLAWTIM RFFSGSNVVLEGMK +Q+EDV+ DQMR+ACDRTLGVVIRYILGLK
Sbjct:    1 MQCPSCYGNRLSPTGDGALVCDDCGEQIAGFQEEEVDFALSGTAVTNRASQSSQARATRKSLEARHFNTENVLCKKPTDEILLCEGVFILAKAIATALIRLRYSSDRIMVPLFEVITCWVRRRHAGAHRYGTSHKGFQQYHVLSLICLASLYIRAPMLPRDLCRLVATRQVPYFAVLGTVFPAEFHKTAAIRKAFTPTKFPVAKHVIRVANELASDKHAWPPLRKFFQTNSPIWCESTVMNLWGSKRTLIPTWFPVAHLHISILRLSRLLGLPDDFGARVLRFMELRLIAVKMARVLNGEQGGPWDDSRLDSYHVNHIPNYLYLTRPFSKVIRAERDLYGFPTDQSLQVDFINTMRICYCRRKLRPNVKKEELSNKEETFRQEWEQCKTAMLRWLNVGSVEDIDNVGWTALSPEVISTMKGRQIRAFAKLVDEIHLEKGEDEPELWGRLVNAFKEIGESG----SDDEMAFEMSEQYGAVVERECMYDLNRIEDGMNARVEREVADMIEERELLDSLDLRTEQGEPVERGPIRQWDKYHPANQRSIRNRKGLYRKLVSKYDYVWEPQGMGLAWTIMFRFFSGSNVVLEGMKATQNEDVYVDQMRKACDRTLGVVIRYILGLK 618          
BLAST of Ggra8365.t1 vs. uniprot
Match: R7Q345 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q345_CHOCR)

HSP 1 Score: 379 bits (974), Expect = 7.160e-120
Identity = 245/670 (36.57%), Postives = 365/670 (54.48%), Query Frame = 0
Query:    1 MRCPSCDNERLSASDDGALVCDACGEQIAGFQEEELDIALSGTAVTNRQSQSSQARATRRSIQLRNEAPV---VQRTRP--PDDILLCEGVFILSKAVVQTLIRLRYCPSRVVQPLFDIVSCWVARRHAGAHRFGTSHVGFQQFHVLSLVCLACLYVRAPMLPRDLCRLVATRQLPYFAVLKTLFPPSFRESAAIRSAFTPTKMPIAKHVARVANELATDDYAWPPLAKFFQRNVPVRTKLSAYHAWGAKCTFVPT--TFPVPHLHITILRLSRLLGLPDQFGARVLRFMELRLVAVKMARLLNHQTDGPYDDSRIDAYHANHIPNYLDPTRPFSKVIHPQRDLYGFPTDHALQADFINTMRLCYGTRKLRRKADAAKLSEREQKLRHEWQRCEDAMLRWLQIGNPEDIDNVAWTAFSPQAISSTSGACLRRLAALVDDIHAEKGEQDPQLWGRFINAFREIGET-------SVEQSEDATVNFVEDEFTHQVE----------ETECMYDVDRICPGLTDSVNEA--VKNMTEERRLLDSLDLRDADGE---PVNREPIRRWGLRRSSKTRPLAN-RKRLYSKII-----------SSYDYFYEPAGIGLAWTIMNRFFSGSNVVLEGMKLSQSEDVHNDQMRRACDRTLGVVIRYILGLKA-VRSVDE 628
            M+CPSC N  L+ +++G ++CDACGE+ AGF++EE+D   +GTAV+ R+SQSSQAR  R  I+ R ++     + ++RP    ++LLCE V + +  +   LI LR    R++ PLF++++ WVARRHAG          F+   VL+LV LA LYVR+PMLPRDLCR+V   ++P+        P   R+S  + + F P  +P+   V   AN LA D +AWPP+ KFF          +        C F  +  +FPV H+ +T+LRLSRLLGLPD+FGARVLRF+ELR +A +M        D  +++  +D        N  +      K+      L  FPTD ++Q DFINTMRLCYGT   R+K D  + + RE  LR EW+ C +AM  WL+IGNPEDI+ V WT  +P  +S T G  +R  A +VD++  + GE  P+LWG+++ AF EIG++       + E +   T  +    F  +V           + EC YDV      LT + +E   +  M +  R  +S+   +  G+   P +R           +K RP  +   + Y++ I           S  ++  EP GIGL+WTI+  FF+GSNVV+  + + +      + + +AC+  + +VI Y+L LK  VR  ++
Sbjct:    1 MQCPSCYNNALTPTEEGRMLCDACGEEFAGFRQEEIDFYATGTAVSTRESQSSQARIIREKIKARRDSIADGPLSQSRPFVNHELLLCEAVILSANKLAAALIDLRCVSDRIMAPLFELITHWVARRHAGKKGVIGRGTVFRPSEVLALVALAALYVRSPMLPRDLCRMVVAEEVPFPGFGIEDLPDHIRKSEVVTALFAPMVVPVPGDVVGAANILARDQHAWPPIRKFFG---------NVKEEGSGPCRFTGSWDSFPVAHVQVTLLRLSRLLGLPDEFGARVLRFIELRRIASRMCSAALEARDKWWEEQAMDTVVLG--DNLREEREGLPKIARKTAYLNEFPTDASVQVDFINTMRLCYGTS--RKKTDERETTNRE--LRKEWENCMEAMETWLRIGNPEDIEYVQWTPKTPSELSHTKGEEIRSYADMVDNLLTDMGESTPELWGKYVAAFAEIGDSWQPDKDRNEEGNRKRTCVYDVKPFESRVRCKIQEGKEEMDNECGYDV------LTGTRHERQPLIEMKDVLRQRESMKKNEKIGKRKLPEHRAASAGEKSGDITKVRPNTDPAAKCYAENIEIKKEPDTHRASREEFLKEPMGIGLSWTILRHFFAGSNVVVGDLHIERLPSFVQNGLLQACNSAMKMVIMYVLWLKGKVRHAED 649          
The following BLAST results are available for this feature:
BLAST of Ggra8365.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGC81.720e-28965.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3457.160e-12036.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033599RNA polymerase I transcription initiation factor TAF1B/Rrn7PANTHERPTHR31576TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 141..469
IPR033599RNA polymerase I transcription initiation factor TAF1B/Rrn7PANTHERPTHR31576TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 1..99
NoneNo IPR availablePANTHERPTHR31576:SF2TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 1..99
NoneNo IPR availablePANTHERPTHR31576:SF2TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 141..469

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:243437..245335 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8365.t1Ggra8365.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 243437..245335 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8365.t1 ID=Ggra8365.t1|Name=Ggra8365.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=633bp
MRCPSCDNERLSASDDGALVCDACGEQIAGFQEEELDIALSGTAVTNRQS
QSSQARATRRSIQLRNEAPVVQRTRPPDDILLCEGVFILSKAVVQTLIRL
RYCPSRVVQPLFDIVSCWVARRHAGAHRFGTSHVGFQQFHVLSLVCLACL
YVRAPMLPRDLCRLVATRQLPYFAVLKTLFPPSFRESAAIRSAFTPTKMP
IAKHVARVANELATDDYAWPPLAKFFQRNVPVRTKLSAYHAWGAKCTFVP
TTFPVPHLHITILRLSRLLGLPDQFGARVLRFMELRLVAVKMARLLNHQT
DGPYDDSRIDAYHANHIPNYLDPTRPFSKVIHPQRDLYGFPTDHALQADF
INTMRLCYGTRKLRRKADAAKLSEREQKLRHEWQRCEDAMLRWLQIGNPE
DIDNVAWTAFSPQAISSTSGACLRRLAALVDDIHAEKGEQDPQLWGRFIN
AFREIGETSVEQSEDATVNFVEDEFTHQVEETECMYDVDRICPGLTDSVN
EAVKNMTEERRLLDSLDLRDADGEPVNREPIRRWGLRRSSKTRPLANRKR
LYSKIISSYDYFYEPAGIGLAWTIMNRFFSGSNVVLEGMKLSQSEDVHND
QMRRACDRTLGVVIRYILGLKAVRSVDEGFAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033599TAF1B/Rrn7