Ggra8363.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8363.t1
Unique NameGgra8363.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length654
Homology
[Close]
BLAST of Ggra8363.t1 vs. uniprot
Match: A0A2V3IGF2 (Histone deacetylase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGF2_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 7.140e-51
Identity = 109/177 (61.58%), Postives = 133/177 (75.14%), Query Frame = 0 
Query:    1 MENHNSPTELQKTTVKIFEHLRHLPHAPSTGFIDSARTPALGIRRLDDDDHDPDVRQPNRRVRHVVDYEGSDIEDDDQYISSLRRAKRKQRRINFPRRRFPAAESPKMPGGSPMRVSSPRRAVENVPNGEANSTAERPDENMTEVRQNGVMEDSNDESLQYKPLADVKVENRDSSAK 177
            MENHNSPTEL KTT+KIFE+LRHLPHAPSTG ID+++ PALG+R+ ++DD DPDVR  +RR RHVVDYEGSDIEDDDQYISSLR AKRK RRINFPRRRFP AE+ K+P  +  +  SP++ VEN  NG A S  ER D  M EV++NGVM+   +    Y+  +   ++  DSS K
Sbjct:  348 MENHNSPTELHKTTMKIFENLRHLPHAPSTGLIDTSQIPALGLRQPNNDDEDPDVRLRSRRARHVVDYEGSDIEDDDQYISSLRYAKRKLRRINFPRRRFPEAENSKLPDKNVAQAHSPKQPVENAANGNAISP-ERRDVPMPEVQENGVMDKKEEPEETYRATSRPPIDE-DSSDK 522
[Close]
BLAST of Ggra8363.t1 vs. uniprot
Match: R7QKP1 (Histone deacetylase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKP1_CHOCR)

HSP 1 Score: 110 bits (275), Expect = 2.770e-21
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0 
Query:    1 MENHNSPTELQKTTVKIFEHLRHLPHAPSTGFIDSAR-TPALGIRRLDD--DDHDPDVRQPNRRVRHVVDYEGSDIEDDDQYISSLRRAKRKQRRINFPRRR 99
            MENHN+P ELQKT  +IFE+LRHLP APST F+D+ R +P + +R   D  D+ DPD R  + R + VVDY GSD EDDDQ ISSLR++ ++ +R+NFP RR
Sbjct:  278 MENHNTPEELQKTKARIFENLRHLPFAPSTQFMDTPRQSPLVALRNTRDGEDNRDPDQRYKSHRRKTVVDYAGSDDEDDDQCISSLRKSSKRPKRLNFPSRR 379
The following BLAST results are available for this feature:
BLAST of Ggra8363.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGF27.140e-5161.58Histone deacetylase n=1 Tax=Gracilariopsis chorda ... [more]
R7QKP12.770e-2156.86Histone deacetylase n=1 Tax=Chondrus crispus TaxID... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 627..647
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..653
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 564..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 607..653
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..459
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..428
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..481
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 497..535
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:237177..239138 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8363.t1Ggra8363.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 237177..239138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8363.t1 ID=Ggra8363.t1|Name=Ggra8363.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=654bp
MENHNSPTELQKTTVKIFEHLRHLPHAPSTGFIDSARTPALGIRRLDDDD
HDPDVRQPNRRVRHVVDYEGSDIEDDDQYISSLRRAKRKQRRINFPRRRF
PAAESPKMPGGSPMRVSSPRRAVENVPNGEANSTAERPDENMTEVRQNGV
MEDSNDESLQYKPLADVKVENRDSSAKAVEEADDDSLRHKPQTVRRGTNG
GELEEHSERKYVNEPPMYKPRTDRKSKNRDLSTNAMGDDDDDSLPQKTRA
DRKAETRDSSAKVGLTKEGDNESLRHRARAVRRGPIGEELDEYGGGKYAH
ESLVYKSRTNRKVANPDSPAKAGAAKEGDDDSVRQKPRTAQRGSSEEELD
EHDGGEYAGESPMYKSQIDWKDKDHDSSEKEEDAEPELDVDADEPPKLVM
KPMHRFRRESRKQDAAPGGRRTTNEDAGRGRSMMESSFREAVNRRLRDQA
EDGTDEMDADRTNGNSTSDGDEERNLDEPKSRTHTGSIQNGTNDGENGTS
REEREETLRSREGGAGSDDQRISVLREHEDLSRSPGTEAQQRPEMPELYD
SRESALLEGGEDAVNNDSEDKSIEGGRKSTEEDEGRSDVGQQVNNTRPVH
APRIDTIVEGLQREEKDINATPSNRDTSEEQRGLQEAEKDLRRTEMEIAR
GGM*
back to top