Ggra835.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra835.t1
Unique NameGgra835.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Homology
BLAST of Ggra835.t1 vs. uniprot
Match: A0A2V3J147 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J147_9FLOR)

HSP 1 Score: 620 bits (1599), Expect = 8.320e-217
Identity = 365/562 (64.95%), Postives = 424/562 (75.44%), Query Frame = 0
Query:    1 MPDFAKSPVQTLTLAPRSNLLAAQTSPDSFSLAQITAPTTSPQAFQPRDSFSAPSLTSLCLASEHVLYHADARGAFHRHAVADTPSLQYSVDAAHTGHELTSITTTSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAVSASSDVDDXXXXXXXXXXXXXXXXXXXVRAHSSKPLHTFEGHSSWVHSVALTANPTPXXXXXXXXXXXXXXXXVAMKERSVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACVISGCEDGSLFRWDCRGLLNVPSDANLLYPK------SGLSSTKPRQDVSGEKYLVENKSVGETVTDEANL---------------------LIHTEPELRRSSP------STPKHFESDALTSPKPVETSNSSSTTLTSQETDSLKTAVATPPQKDPRFDRSAAELVNALKRIQTLEKSLQRAEHDLGMKETQIVQLNKSVAEKDLFISRLQGELGTSKRLLQAANVRNLLDQNPRKADISLDYQEPVNKIGAVTDQLTALKARLDAMIATN 529
            MPDFAK  VQT+T+AP SNLLAAQTS DSF+LA+I APT SPQ FQP  +++A SLTSLCL S +VLYHAD+RGAFHRHA++D P+LQYSVDAAH+GHELT++T  S DS+V+TAGKDG VRCWDPETRQ TA+L GHRYEVRSVA S+SSDVD          XXXXXXXXXXVRAHSSK +H FEGHS WVHSVALT     XXXXXXXXXXXXXXXXVAMK+R+VF GHE+RVWSVA SPDG FA SGSTDATVRLW +G+DEGKC++LEGHRDSV+SVAA TPA VISGCEDG+LF WDCRGLLNVP DA L+  +        +SS    +  S  + L  ++ +G+T  D                         LI TE + + +S         PKH  +D L S     T++S S +L +Q T+ LKTA  TPPQKDPRFD+SAAELVNALK+IQTLEKSLQ+A+  L MK+TQI QLN+SVAEKD FISRLQ E  +SK+LL AANVR L  +NPRKAD++LDYQEPVNKIGAVTDQL+ALKARLDAMIATN
Sbjct:    1 MPDFAKGSVQTITVAPHSNLLAAQTSSDSFALARIEAPTKSPQPFQPCKTYAASSLTSLCLPSTNVLYHADSRGAFHRHAISDAPTLQYSVDAAHSGHELTTVTALSSDSLVITAGKDGTVRCWDPETRQSTARLAGHRYEVRSVAASSSSDVDATPVTIVASGXXXXXXXXXXVRAHSSKEIHVFEGHSGWVHSVALTXXXXXXXXXXXXXXXXXXXXXVAMKQRTVFSGHEFRVWSVAFSPDGSFAVSGSTDATVRLWSVGKDEGKCNILEGHRDSVISVAAHTPASVISGCEDGALFSWDCRGLLNVPKDAPLVNTQVEQKAVPAVSSAVESEQTSPRRRL-SHRRIGQTPLDHXXXXXXXXXXXXXXXXXXXXXXXPLIQTEAQPKSTSDRQPFSSGKPKHVGADELRSENVSNTAHSPSASLGTQRTELLKTAAVTPPQKDPRFDKSAAELVNALKQIQTLEKSLQQAQTSLRMKDTQIEQLNRSVAEKDTFISRLQAEADSSKQLLHAANVRKLFLENPRKADVALDYQEPVNKIGAVTDQLSALKARLDAMIATN 561          
BLAST of Ggra835.t1 vs. uniprot
Match: R7QJ98 (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ98_CHOCR)

HSP 1 Score: 339 bits (869), Expect = 6.390e-107
Identity = 251/551 (45.55%), Postives = 320/551 (58.08%), Query Frame = 0
Query:    1 MPDFAKSPVQTLTLAPRSNLLAAQTSPDSFSLAQITAPTTSPQ---AFQPRDS-FSAPSLTSLCLASEHVLYHADARGAFHRHAVADTPSLQYSVDAAHTGHELTSITTTSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAVSASSDVDDXXXXXXXXXXXXXXXXXXXVRAHSSKPLHTFEGHSSWVHSVALTANPT-PXXXXXXXXXXXXXXXXVAMKERSVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGK--CHVLEGHRDSVLSVAALTPACVISGCEDG-SLFRWDCRGLLNVPSDANLLYPKSGLSSTKPRQDVSGEKYLVENKSVGETVT-----DEANLLIHTE------PELRRSSPSTPKHFESDALTSPKPVE---TSNSSSTTLTSQETDSLKTAVATPPQKDPRFDRSAAELVNALKRIQTLEKSLQRAEHDLGMKETQIVQLNKSVAEKDLFISRLQGELGTSKRLLQAANVRNLLDQNPRKADISLDYQEPVNKIGAVTDQLTALKARLDAMIATN 529
            MP FA  PV  L L+P    + A  + D  SL  + A  ++P    A  P  + F   S+T+LC  S   +Y ADARG+F R A +D  + QY+V AAH+G ELT+I   S  S V T+GKDGAVR WDPETRQ  A+LTGHRYEVR VAV++SSD         XXXXXXXXXXXXXVRA S K +H   GH+ WVH+VAL   P  P   XXXXXXXXXXXXX AMKER V RGHEYRVW +A++ D  FA +GSTDATVR W LGE EG   CHV EGH DSVL                  +LF WDC  L    +   +         T+   DV+    LVE ++V ++V      D   L++  +      P LR +  ++P    +    +  P     T  S +   T   TD LK A +    ++P+FD+SAAELVNAL+RI+ LE +L  ++  L  +  +              +S LQ ++ +SK L+ AANVR +L  NPRK D SLDY+EPVNKIGAV+D+L+AL ARLDAM+AT+
Sbjct:    1 MPPFASGPVPALALSPCGTRVVAAAAHDHISLLTLPASPSAPLTSLALPPAPALFPVLSVTALCFPSSSAVYTADARGSFKRLAASDGLAEQYTVAAAHSGDELTAIAALSDSSPVATSGKDGAVRLWDPETRQSIARLTGHRYEVRDVAVASSSDSAGAAVTVVXXXXXXXXXXXXXVRASSGKEVHCLRGHAGWVHAVALGNAPGGPIALXXXXXXXXXXXXXXAMKERMVMRGHEYRVWGLALASDAAFAITGSTDATVRAWNLGEGEGAGDCHVYEGHTDSVLXXXXXXXXXXXXXXXXXXALFMWDCATLFGRDAKKEV--------HTETLIDVAPVPKLVEKEAVTKSVIAPKQLDTEPLIVEKQMPEEKLPVLRETKIASPFRVSTTPAFTASPRRAPITLVSDAIPDTGMTTDGLKAAASVTVDQEPKFDKSAAELVNALRRIKDLETALAESKEQLESRNREXXXXXXXXXXXXXXLSLLQRQIDSSKNLINAANVRAILAANPRKVDESLDYEEPVNKIGAVSDKLSALVARLDAMVATH 543          
BLAST of Ggra835.t1 vs. uniprot
Match: A0A6T6NZT0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NZT0_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 3.530e-27
Identity = 105/248 (42.34%), Postives = 147/248 (59.27%), Query Frame = 0
Query:   88 QYSVDAAHTGHELTSITTTSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAVSASSDVDDXXXXXXXXXXXXXXXXXXXVRAHSSKPLHTFEGHSSWVHSVALTANP-TPXXXXXXXXXXXXXXXXVAMKERSVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAAL-TPACVISGCEDGSLFR-WDCRGLLNVPSDANLLYPKSGLSSTKPRQDV 332
            ++ + AAH   ++T I++T    VV ++GKD  VR WD ET++   KL GH+  V+ VAV+ SSD     XXXXXXXXXXXXXXXX  RA  ++ +H  +GHS WVH+V L+  P +P       XXXXXXXX   +K+ +V RGHE RVWSVAI+  G FA SGS+D T+R W++        ++E   D++L+VA     A  +SG + G +   W       + S  +  Y  SG ++  P +DV
Sbjct:   95 KWELKAAHDALDITGISSTDEGRVVASSGKDECVRLWDVETQKQIVKLEGHKGWVKCVAVATSSDAVSCGXXXXXXXXXXXXXXXX-TRASEAREVHNLQGHSGWVHAVNLSEGPRSPKIVSCSGXXXXXXXXLNNLKQENVMRGHELRVWSVAINGSGDFAVSGSSDGTLRSWRVAGHSFTEKIVEKGDDAILAVAMTKNGALAVSGYDSGVVRETW-------LESSVSEAYDASGSATVTPPEDV 334          
BLAST of Ggra835.t1 vs. uniprot
Match: A0A135VFL9 (Uncharacterized protein n=1 Tax=Candidatus Thorarchaeota archaeon SMTZ1-83 TaxID=1706445 RepID=A0A135VFL9_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 8.720e-9
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0
Query:  223 MKERSVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPA 288
            M   SVF GHE+ VWS+  +PDGR+  SG  DATVR+W L +     H L GHR +V  +A ++ +
Sbjct:    1 MVPNSVFEGHEFTVWSIDFTPDGRYVVSGGQDATVRIWDL-QSGSLLHTLPGHRGAVYGIATMSDS 65          
BLAST of Ggra835.t1 vs. uniprot
Match: A0A8H3AT88 (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AT88_9AGAM)

HSP 1 Score: 67.4 bits (163), Expect = 4.920e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0
Query:  222 AMKERSVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGKCHVLEGHRDSV 279
            +M  +S    H   VWSVA+S DG   ASGS+D TVR+WK+GED+   H+L+GH D V
Sbjct:  786 SMISQSHSSSHSGTVWSVALSSDGHHIASGSSDCTVRIWKVGEDKSSAHLLKGHHDYV 843          
BLAST of Ggra835.t1 vs. uniprot
Match: WD40-repeat-containing domain protein n=2 Tax=Suillus fuscotomentosus TaxID=1912939 RepID=UPI001B881783 (WD40-repeat-containing domain protein n=2 Tax=Suillus fuscotomentosus TaxID=1912939 RepID=UPI001B881783)

HSP 1 Score: 65.5 bits (158), Expect = 6.060e-8
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 0
Query:  227 SVFRGHEYRVWSVAISPDGRFAASGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPA-CVISGCEDGSLFRWDCRGLLNVPSDANLLYPKSGLSSTKPRQDV 332
            +V  GH+Y V+S+++S +GRF AS S D T RLW L  +      L+ H D V  VA  T    +++GCE+ + + WD + +L      +LL   S +++ +P  DV
Sbjct:   23 AVLDGHQYWVYSISLSVNGRFLASASDDKTARLWNLDTNLPVGLPLQ-HEDEVDCVALSTDGKLLVTGCENTNAYTWDIQVILKEAGLEDLLPSLSDVAAQEPLMDV 128          
The following BLAST results are available for this feature:
BLAST of Ggra835.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J1478.320e-21764.95Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJ986.390e-10745.55WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
A0A6T6NZT03.530e-2742.34Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A135VFL98.720e-945.45Uncharacterized protein n=1 Tax=Candidatus Thorarc... [more]
A0A8H3AT884.920e-851.72Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
WD40-repeat-containing domain protein n=2 Tax=Suillus fuscotomentosus TaxID=1912939 RepID=UPI001B8817836.060e-835.51WD40-repeat-containing domain protein n=2 Tax=Suil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 423..450
NoneNo IPR availableGENE3D1.20.5.170coord: 429..479
e-value: 5.1E-6
score: 28.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..418
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 95..305
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 229..262
score: 12.393768
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 135..176
score: 9.203785
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 186..220
score: 10.653776
NoneNo IPR availableCDDcd00200WD40coord: 96..303
e-value: 6.34229E-50
score: 171.364
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 161..175
score: 38.4
coord: 248..262
score: 38.42
coord: 206..220
score: 39.85
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 222..261
e-value: 1.7E-9
score: 47.6
coord: 265..303
e-value: 0.0055
score: 25.9
coord: 128..174
e-value: 6.4E-8
score: 42.3
coord: 179..219
e-value: 7.0E-10
score: 48.8
coord: 84..125
e-value: 0.047
score: 22.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 96..125
e-value: 0.034
score: 15.0
coord: 181..219
e-value: 6.1E-7
score: 30.0
coord: 227..261
e-value: 1.0E-7
score: 32.5
coord: 129..174
e-value: 1.1E-6
score: 29.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 100..134
score: 8.67045
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 186..228
score: 12.881143
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 229..262
score: 15.019908
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..176
score: 10.976305
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 6..201
e-value: 1.4E-24
score: 88.4
coord: 202..327
e-value: 2.0E-28
score: 101.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 206..220
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 161..175
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 96..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:22446..24035 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra835.t1Ggra835.t1Gracilaria gracilis GNS1m malemRNAtig00000202_pilon 22446..24035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra835.t1 ID=Ggra835.t1|Name=Ggra835.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MPDFAKSPVQTLTLAPRSNLLAAQTSPDSFSLAQITAPTTSPQAFQPRDS
FSAPSLTSLCLASEHVLYHADARGAFHRHAVADTPSLQYSVDAAHTGHEL
TSITTTSPDSVVVTAGKDGAVRCWDPETRQCTAKLTGHRYEVRSVAVSAS
SDVDDSPVTIVASGGRDKTIRLWDVRAHSSKPLHTFEGHSSWVHSVALTA
NPTPLLVSCAGDKTVRVWDLVAMKERSVFRGHEYRVWSVAISPDGRFAAS
GSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACVISGCEDGSLF
RWDCRGLLNVPSDANLLYPKSGLSSTKPRQDVSGEKYLVENKSVGETVTD
EANLLIHTEPELRRSSPSTPKHFESDALTSPKPVETSNSSSTTLTSQETD
SLKTAVATPPQKDPRFDRSAAELVNALKRIQTLEKSLQRAEHDLGMKETQ
IVQLNKSVAEKDLFISRLQGELGTSKRLLQAANVRNLLDQNPRKADISLD
YQEPVNKIGAVTDQLTALKARLDAMIATN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf