Ggra8346.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8346.t1
Unique NameGgra8346.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length624
Homology
BLAST of Ggra8346.t1 vs. uniprot
Match: A0A2V3IHZ4 (Telo_bind domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHZ4_9FLOR)

HSP 1 Score: 528 bits (1361), Expect = 2.540e-178
Identity = 290/639 (45.38%), Postives = 401/639 (62.75%), Query Frame = 0
Query:    2 GHRYVDIATALNPTADLRRTVNLFGVIIDCRAPCTTNGGDLRCEIVLADESCVQPDGSLRKFFVHKFVTRPSDAIPFRQLGDIVRIHRASLIDYSGYGKPTVRQGRLKFYSTVLLWKHEANDFVPV-------LQQCPAHRDLLEPPPSPAPVDIHDKFRIRRLRGWTKDFFFTQYKSERQYLRTVPEILNASNGTIFLSKSFDLICYVR--QCSSPESENNLVMTVTGGERTFGTSILISSRQPWKARGVPQTFSFFDFCPSWSTRPTNGSWLLIRDVRVVDTGRGREIELSVSGRTSTLIWNADNSPDVRAARERGIMQQPNAQQNVTVPRAVVR-------VRPPPHSTPKRPRSNTA-EDILHRNLKAPRHDRHITATTSENNYLRTRNVVPYNTGAGPPPLPDDAVSRAAPGADNHLNTALATLAEPNPPLKHDYHLAIVPAPDGVSDAGRDQGAHIGIELAPHDKIVTVHSRTDQKVWRIGDMVYAFRRGSGE-KLFRLAVWARAIVWPRDLRHACRPICAKCEKGVLMIGNNCDGCGSDRKLWQFVLRLLLEERSAGASIESWVIGKDAERLLGLQASDLRMNDTKCTVLRQKLRTLHAAINVVDCLVVPYEYEDDMGLYRVACVLKGTRLL 622
             + Y  +A  L+     +RTV+++GVI+DCRAPC TNG  LR EIV+ADESC+ P G+LR F +H F+  P+DAIPFR +GDIVRIHRA LIDY+  G   VRQGR+K+YS+VLLW+H+ + + P        L+Q   H      P +   +D HD  R+  LR W+++F   +Y S+RQYLR VPE+L+A    +F++KSFDL+CYV+  Q ++     N+++     +    T+IL++S++P ++R   ++F+F  FCPSW+ RP   SWLL+RDVR+   G+ R IELSVSGRTSTLIWN  N+PDVRAAR++    Q + + +VT   A+         + P P +TPKRPR+  A +D   +    P  DR+       NN   T+   P +       + +D  S A P  +      +A  AE   P +       VP  +             GI L P++ ++T H + D+KVWRI DMV AFR G GE K+FRLAVWAR + WPRDLR ACRP+C  CE+ VL++G+ C+ CGS  + WQF LR +LE+R  GA IESWV GK+AER LG QA+DLR  + KC +L+Q+L+ + + + VVDCLV+PYEYEDDMG+YR+AC +KGTR L
Sbjct:   25 SYHYHHVAAILDMQT-AKRTVDVYGVILDCRAPCITNGQQLRSEIVIADESCMSPSGTLRTFPIHCFIDDPTDAIPFRDVGDIVRIHRALLIDYTPQGDSPVRQGRVKYYSSVLLWRHDDHHYDPFITKSYNQLRQSHYHSSS---PNATHKLDQHDMSRVAALRKWSRNFVLRKYYSQRQYLRIVPEVLSAPQDAVFITKSFDLVCYVQHPQVAAENGTINMLVCYREEQGAEPTNILVTSQEPSQSRENLRSFNFVHFCPSWNFRPNKPSWLLLRDVRIAHRGQQRIIELSVSGRTSTLIWNNANAPDVRAARDK---YQEHRENHVTP--AITHSATGYSMLHPHPQTTPKRPRTWDANQDYASKQTLLPAADRY------PNNAGNTKRRKPSDAQG----ISEDQTSHA-PRDNGPFAQTVAPRAEDRRPEQR----TSVPGENST-----------GIALNPYESLITTHDQQDRKVWRIQDMVRAFRLGCGECKVFRLAVWARGVAWPRDLRLACRPLCKGCEEDVLVLGDKCNKCGSQEQRWQFALRFVLEDRMEGARIESWVKGKEAERFLGFQAADLRNENGKCELLKQRLQQITSPVKVVDCLVIPYEYEDDMGVYRIACAMKGTRCL 628          
BLAST of Ggra8346.t1 vs. uniprot
Match: R7QIR3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIR3_CHOCR)

HSP 1 Score: 127 bits (320), Expect = 2.710e-28
Identity = 131/472 (27.75%), Postives = 191/472 (40.47%), Query Frame = 0
Query:  174 RQYLRTVPEILNASNGTIFLSKSFDLICYVRQCSSPESENNLVMTVTG----GERTFGTSILISSRQPWKARGVPQTFSFFDFCPSWSTRPTNGS-WLLIRDVRVVDTGRGREIELSVSGRTSTLIWNADNSPDVRAARER--GIMQQPNAQQNVTVPRAVVRVRPPPHSTPKRPRSNTAEDILHRNLKAPRHDRHITATTSENNYLRTRNVVPYNTGAGPPPLPDDAVSRAAPGADNHLNTALATLAEPNPPLKHDYHLAIVPA-PDGVSDAGRDQGAHIGIELAPHDKIVTVHSRTDQKVWRIGDMVYAFRRGSGEKLF--RLAVWARAIVWPRDLRHACRPICAKCEKGVLMIGN----NCDGCGS-------DRKLWQFVLRLLLEERSAGASIESWVIGKDAERLLG-LQASDLRMNDTKCTVLRQKLRTLHAAINVVDCLVVPYEYEDDMGLYRVACVLKGTRLLS 623
            ++YLRTV E++ A   T FL+KSFDL+C +++ +   +    +  V           G  + + S              F +FCP+W +RPT  S WLLIRD+R+   G  R   L V  +TSTL+W + N+P V   RE+  G+             R V               SN A    H    A   +RH+     E+  L   N      G+G            A      L+++     +P          AI P  PD  +                  K  TV SR   ++ ++  +       S  KL   R+   ARA   PRD R  CRP CA+C+  + + GN     C  C             W + + L +E+R AG  ++ W+ G++     G   A+DL  N  K   L +  +TL      +DC VVPYEYED  GL  VA  +  T+L+ 
Sbjct:    3 KRYLRTVAEVVQALPSTDFLTKSFDLLCCMKEDTRIRNVGGTLKFVVSDAFFNAGQSGLQMRVESENSMDQLEHDPASQFAEFCPTWQSRPTGSSVWLLIRDIRIQTEGSQRVAVLQVGRKTSTLVWQSANAPLVGTFREKLGGL-------------RVV---------------SNDAPVASHLREHATVQERHVPDLPRESCALNHEN----GNGSG------------ASKRRKRLDSSAQPATQPQ---------AIRPPHPDSFA------------------KQSTVCSRPSIEM-QLSSIAGLREAVSKRKLHPHRIRARARACSVPRDTRQLCRPWCARCKVFMKVHGNLRAVECVKCARVLHKVQRAEMQWAYCVCLNMEDR-AGRRLDVWIEGEEGSSFFGAFPAADLAKNVDKRRRLLKLFQTLLNPEVEIDCCVVPYEYEDTHGLCHVASKIFATKLIE 401          
BLAST of Ggra8346.t1 vs. uniprot
Match: A0A7J7IKD7 (Telo_bind domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKD7_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 7.940e-8
Identity = 84/340 (24.71%), Postives = 134/340 (39.41%), Query Frame = 0
Query:    3 HRYVDIATALNPTADLRRTVNLFGVIIDCRAPCTTNGGDLRCEIVLADESCV--QPDG---SLR--KFFVHKFVTRPSDAIPFRQLGDIVRIHRASLIDYSGYGKPTVRQGRLKFYSTVL----LWK-----------HEANDFVPVLQQCPAHRDLL-----EPPPSPAP-----------VDIHDKFRIRRLRGWTKDFFFTQ-YKSERQYLRTVPEILNASNGTIFLSKS-----FDLICYVRQCSSPESENNLVMTVTGGERTFGTSILISSRQPW---KARGVPQTFSFFDFCPSWSTRPTNGSWLLIRDVRVVDTGRGREIELSVSGRTSTLIW 295
            HRYV +A   +      ++ +++GVI+D RAP     G+L  EI + D S V  + DG    LR  K  +  F +R SD IP+  +GD++R+HRA L  Y      + +   L+  +  L    LW             EA+   P  Q   A   L+     + PP P             +   +K    R+  W + F     +   R +  TV EIL  + G    +       +DLI  +   S   +   + +TV  G  T    + ++    W     R  P+                 G+W  +RDVR+ D   G    L++S  +S  ++
Sbjct:  212 HRYVALAHLQSMNQLTGQSCDVYGVIVDVRAPRPVRTGELLTEIQIVDPSVVTMESDGHFTGLRPPKLMLTSFTSRLSDCIPYIGVGDVIRVHRAELRWYPQQSAHSSKMETLELKTNTLSSFCLWPALPPEIDQTKVSEASPLSPFDQPWAAGHALVARTASQNPPDPTICVYPPNTKCILITEGEKQYAMRMLLWARQFLSQSGFLGSRAFSATVNEILQEAEGERVANNMRARARYDLIAVI--VSIERNTQEIQLTVADGSTTHAMPVYVAM-DCWIRITHRLEPKL---------------QGNWFRLRDVRL-DRRHGTNWRLTMSEGSSIYMF 532          
BLAST of Ggra8346.t1 vs. uniprot
Match: M1VLL5 (Similar to telomere-binding protein alpha subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VLL5_CYAM1)

HSP 1 Score: 62.0 bits (149), Expect = 2.850e-6
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0
Query:    3 HRYVDIATALNPTADLRRTVNLFGVIIDCRAPCTTNGGDLRCEIVLADESCVQPDGSLR-------KFFVHKFVTRPSDAIPFRQLGDIVRIHRASL 92
            H Y+ +    +P     RT +++GVI+D RAP     G+L  E+ + D S V  D   R       +F +  F +R SD +P+  +GD+VR+HRA L
Sbjct:  205 HHYLTLEQLRHPGQMSGRTYDVYGVIVDVRAPRLVRTGELLTELQIIDPSIVVTDSDGRLVSFAPPQFMLTSFSSRLSDCVPYIGVGDVVRVHRAEL 301          
The following BLAST results are available for this feature:
BLAST of Ggra8346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHZ42.540e-17845.38Telo_bind domain-containing protein n=1 Tax=Gracil... [more]
R7QIR32.710e-2827.75Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7J7IKD77.940e-824.71Telo_bind domain-containing protein n=1 Tax=Cyanid... [more]
M1VLL52.850e-635.05Similar to telomere-binding protein alpha subunit ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 5..173
e-value: 1.1E-19
score: 72.5
NoneNo IPR availablePANTHERPTHR14513:SF0PROTECTION OF TELOMERES PROTEIN 1coord: 355..601
NoneNo IPR availablePANTHERPTHR14513:SF0PROTECTION OF TELOMERES PROTEIN 1coord: 18..220
IPR011564Telomeric single stranded DNA binding POT1/Cdc13PFAMPF02765POT1coord: 6..97
e-value: 4.2E-9
score: 36.4
IPR028389Protection of telomeres protein 1PANTHERPTHR14513PROTECTION OF TELOMERES 1coord: 18..220
IPR028389Protection of telomeres protein 1PANTHERPTHR14513PROTECTION OF TELOMERES 1coord: 355..601
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 18..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:171229..173100 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8346.t1Ggra8346.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 171229..173100 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8346.t1 ID=Ggra8346.t1|Name=Ggra8346.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MGHRYVDIATALNPTADLRRTVNLFGVIIDCRAPCTTNGGDLRCEIVLAD
ESCVQPDGSLRKFFVHKFVTRPSDAIPFRQLGDIVRIHRASLIDYSGYGK
PTVRQGRLKFYSTVLLWKHEANDFVPVLQQCPAHRDLLEPPPSPAPVDIH
DKFRIRRLRGWTKDFFFTQYKSERQYLRTVPEILNASNGTIFLSKSFDLI
CYVRQCSSPESENNLVMTVTGGERTFGTSILISSRQPWKARGVPQTFSFF
DFCPSWSTRPTNGSWLLIRDVRVVDTGRGREIELSVSGRTSTLIWNADNS
PDVRAARERGIMQQPNAQQNVTVPRAVVRVRPPPHSTPKRPRSNTAEDIL
HRNLKAPRHDRHITATTSENNYLRTRNVVPYNTGAGPPPLPDDAVSRAAP
GADNHLNTALATLAEPNPPLKHDYHLAIVPAPDGVSDAGRDQGAHIGIEL
APHDKIVTVHSRTDQKVWRIGDMVYAFRRGSGEKLFRLAVWARAIVWPRD
LRHACRPICAKCEKGVLMIGNNCDGCGSDRKLWQFVLRLLLEERSAGASI
ESWVIGKDAERLLGLQASDLRMNDTKCTVLRQKLRTLHAAINVVDCLVVP
YEYEDDMGLYRVACVLKGTRLLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011564Telomer_end-bd_POT1/Cdc13
IPR028389POT1
IPR012340NA-bd_OB-fold