Ggra8340.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8340.t1
Unique Name	Ggra8340.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	624

Homology

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BLAST of Ggra8340.t1 vs. uniprot
Match: A0A2V3IHV7 (RNA-binding post-transcriptional regulator cip2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHV7_9FLOR)

HSP 1 Score: 479 bits (1232), Expect = 5.660e-161
Identity = 260/408 (63.73%), Postives = 317/408 (77.70%), Query Frame = 0

Query:  214 TNCVVLKNLDYSITQTILEDVVRRVTEGHNDFVNITLIDDKNTGTFRGMAFVNFHTTRDAAAALSELSKMVINNRRVIAEYRRLRPGEKNQ--ERRSKKYDNYNYNHRQTFEKDIQPQVDANGVAVDKRVAFFAKRDTAKKDAQNNKLELKTEKDKLRDAQFRALLTKYANDELKDSKGKDVVFDASLTSYERKMVHQICDSLNLGHISRFDDSGNRLLHVTKDPERSAEWEKESMESKAEARKLAIEQRRKVRENDMNLDK-KSDANVVPASPEELQGINWFKPRSAMTADGEAENGTSGIRAPTFKTYVPPRKPKGPDGTVGFTARMELREKQQAEVVAEEEGVSPSDPVETDEQKDEXXXXXXXXDVETDGSCLEKSDSSETSSTKSGKSTHKVLNPSVPAFSPS 618
            TNCVVLKNLDY+IT++ILEDVVRRVT GHNDFV++ LIDDK TGTFRGMAFVNFHTTRDA AALSELSKMVIN+R+VIAEYRRLRPGEK +  +R  KKYDNY +NHRQTFEK ++ + DANGVA+DKRVAFFA RD AKKDAQ    E+KTE+DK RDAQFRALL +YAN EL++   KD+VFD+SLTSYERKMVH ICD +NLGHISRFD+ GNR+L+VT+DPER+A WEKE+ME+K EARK A EQ+RK +E D+N D+ KS+      + EELQGI WFKPR+A+ +DG+ +N   GIRAPTFKTY+P RKPKGPDGT+GFT R++  EK+QAE+ +   G    + +E + Q           D  +  S      S  ++ TKSGKS+ + L+P+VP FSPS
Sbjct:   81 TNCVVLKNLDYNITRSILEDVVRRVTAGHNDFVSVNLIDDKYTGTFRGMAFVNFHTTRDATAALSELSKMVINDRKVIAEYRRLRPGEKKEYEKRGGKKYDNYYHNHRQTFEKHVELEPDANGVAIDKRVAFFATRDHAKKDAQKQ-FEMKTERDKHRDAQFRALLVQYANGELENGSAKDIVFDSSLTSYERKMVHHICDEMNLGHISRFDEQGNRVLNVTRDPERAAAWEKEAMEAKEEARKQAAEQKRKAKE-DINFDRNKSEPTTPSPNAEELQGIQWFKPRAALNSDGDDKNTALGIRAPTFKTYIPQRKPKGPDGTIGFTVRVKAFEKKQAELTSATGG-DVGNGIEENGQ-------LSADDASSAASDXXXGKSVASTPTKSGKSSQRGLDPNVPPFSPS 478

[Close]

BLAST of Ggra8340.t1 vs. uniprot
Match: A0A1X6PDU2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDU2_PORUM)

HSP 1 Score: 61.2 bits (147), Expect = 3.790e-6
Identity = 50/154 (32.47%), Postives = 71/154 (46.10%), Query Frame = 0

Query:  392 DVVFDASLTSYERKMVHQICDSLNLGHIS-RFDDSGN-RLLHVTKDPERSAEW---EKESMESKAEARKLAIEQRRKVRENDMNLDKKSDANVVPASPEELQGINWFKP-RSAMTADGEAENGTSGIRAPT-FKTYVPPRKPKGPDGTVGFTAR 538
            D+ F+A LTSY+R++VH++  +++LGH+S    ++ N R + VTKDP R A W   E    E   +AR+ A E+++                                  R A            GI  P   + YVPPR+P GPDGT GF AR
Sbjct:  316 DLRFEADLTSYQRRIVHEVAGAMDLGHLSVNVPNAVNLRTVLVTKDPARKALWAASEVSVRERTKKAREAAAERKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAXXXXXXXXXXXXGIIQPDKARLYVPPRQPTGPDGTNGFAAR 469

The following BLAST results are available for this feature:

BLAST of Ggra8340.t1 vs. uniprot

BLAST of Ggra8340.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IHV7	5.660e-161	63.73	RNA-binding post-transcriptional regulator cip2 n=...	[more]
A0A1X6PDU2	3.790e-6	32.47	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 351..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 558..584
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 589..623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 498..623
None	No IPR available	CDD	cd02325	R3H	coord: 385..434 e-value: 1.51275E-5 score: 41.0606
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 216..293 e-value: 5.2E-12 score: 55.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 218..290 e-value: 7.2E-12 score: 45.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 215..297 score: 12.35567
IPR001374	R3H domain	SMART	SM00393	R3H_4	coord: 354..435 e-value: 0.0066 score: 24.9
IPR001374	R3H domain	PROSITE	PS51061	R3H	coord: 367..435 score: 10.112083
IPR036867	R3H domain superfamily	GENE3D	3.30.1370.50		coord: 354..442 e-value: 1.0E-11 score: 46.4
IPR036867	R3H domain superfamily	SUPERFAMILY	82708	R3H domain	coord: 385..437
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 182..327 e-value: 1.3E-18 score: 69.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 181..305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:162206..164154 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8340.t1	Ggra8340.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000041_pilon 162206..164154 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8340.t1 ID=Ggra8340.t1|Name=Ggra8340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MRPPAARRARPRRMDIDDQREESSDVHKTRPGSACGCSQAADTAPSLGGA
RQRQRAAAGAFSPAAEVATIRPSLREPLLSVALSAAAYSAALPPLLRAPP
FLMAATQGSAALAVADVRPDVLSKAASLEADVCTNAAVAAVASPLPLSRS
PRASPGRMAQHASSPAQLSNGAHNGAHNHHHHHHHQLHHHHHAHSHHNNN
KNNKWKHQTPPPPTNCVVLKNLDYSITQTILEDVVRRVTEGHNDFVNITL
IDDKNTGTFRGMAFVNFHTTRDAAAALSELSKMVINNRRVIAEYRRLRPG
EKNQERRSKKYDNYNYNHRQTFEKDIQPQVDANGVAVDKRVAFFAKRDTA
KKDAQNNKLELKTEKDKLRDAQFRALLTKYANDELKDSKGKDVVFDASLT
SYERKMVHQICDSLNLGHISRFDDSGNRLLHVTKDPERSAEWEKESMESK
AEARKLAIEQRRKVRENDMNLDKKSDANVVPASPEELQGINWFKPRSAMT
ADGEAENGTSGIRAPTFKTYVPPRKPKGPDGTVGFTARMELREKQQAEVV
AEEEGVSPSDPVETDEQKDEEEAKSEEEDVETDGSCLEKSDSSETSSTKS
GKSTHKVLNPSVPAFSPSYQTFY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR001374	R3H_dom
IPR036867	R3H_dom_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf