Ggra8334.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8334.t1
Unique NameGgra8334.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Homology
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BLAST of Ggra8334.t1 vs. uniprot
Match: A0A2V3IHU7 (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHU7_9FLOR)

HSP 1 Score: 259 bits (661), Expect = 2.990e-83
Identity = 138/267 (51.69%), Postives = 174/267 (65.17%), Query Frame = 0 
Query:    4 SSSCALLSLPCDILHQIIRHLDFSSLCALSETNRSLHRLATHNDAWKHLTRRRFRVNVRGTLPHRLRLAGSLSWKTLFSNWHGQKRMPISRTTGPTFHSFVRCDER-NGIRLWLCVSSADDCRLRNGALRMRFVIQNIWSHAVRLQPQRIVVRLLDGLVLQVQPPFDSS-CLSIAAIRFERGASAAEQH---------VLSLDDFAVVCLDIRLPHAVFEVDVLERLKDICIPIVSDTVTTVGATFVDKHLWDAYELLPGGWWVRRA 259
            S S AL +LP D+L  I + LDF SLC LSETN  LH LA+    W+H+T RRFRVN    LP  L L+G+LSW+TLFSNWH Q+RMPISRTTGPTF  F + D     I++W+CVSSADDCRLR+GALR+R V+QNI    + LQP +  +   +G  +  QPP DS+  L+I  I  E   S    H          L LD+FAV+ +D+RL   VFEVDVLERL+ + IP+++       A F+D  +W+AYE LPGGWWVRRA
Sbjct:    2 SVSAALQTLPADVLSLIFQRLDFRSLCNLSETNSVLHALASSESTWRHITTRRFRVNTNAQLPRPLALSGNLSWRTLFSNWHAQRRMPISRTTGPTFTVFAKGDPFVPQIQMWICVSSADDCRLRDGALRLRLVVQNISEPCILLQPSQTHIAFTEGGCICPQPPSDSARTLTIVQIACESWHSNEPSHRLVDTDKPLFLELDEFAVIVMDLRLADTVFEVDVLERLEHVRIPVITHCFQEAVAPFLDGVIWEAYEFLPGGWWVRRA 268
The following BLAST results are available for this feature:
BLAST of Ggra8334.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHU72.990e-8351.69F-box domain-containing protein n=1 Tax=Gracilario... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 12..52
e-value: 3.2E-4
score: 30.0
IPR001810F-box domainPFAMPF12937F-box-likecoord: 10..54
e-value: 3.4E-7
score: 30.0
IPR001810F-box domainPROSITEPS50181FBOXcoord: 6..52
score: 13.206685
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..90
e-value: 4.1E-10
score: 41.4
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:120656..121435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8334.t1Ggra8334.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 120656..121435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8334.t1 ID=Ggra8334.t1|Name=Ggra8334.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MPSSSSCALLSLPCDILHQIIRHLDFSSLCALSETNRSLHRLATHNDAWK
HLTRRRFRVNVRGTLPHRLRLAGSLSWKTLFSNWHGQKRMPISRTTGPTF
HSFVRCDERNGIRLWLCVSSADDCRLRNGALRMRFVIQNIWSHAVRLQPQ
RIVVRLLDGLVLQVQPPFDSSCLSIAAIRFERGASAAEQHVLSLDDFAVV
CLDIRLPHAVFEVDVLERLKDICIPIVSDTVTTVGATFVDKHLWDAYELL
PGGWWVRRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf