Ggra8315.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8315.t1
Unique Name	Ggra8315.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	189

Homology

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BLAST of Ggra8315.t1 vs. uniprot
Match: A0A2V3IKC0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKC0_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 5.470e-21
Identity = 92/192 (47.92%), Postives = 112/192 (58.33%), Query Frame = 0

Query:    1 MPEAYRGRQGAPVVYSAEAHREFVTGFRQRKMQRRQIAQKRAAXXXXXXXXXXXXXXRDVFRTNRERIQADFEDEEENGS-STVQSTRFQGSEGVVTAVVQPLDFEKPALLPKAPQEVVKSPNEVEDKQSSESAKD---SGSPSTKSVPKLGVVKPKKKSWKRKISYTHKLSKGNLRKAQLRRRKEARKNAS 188
            MP   R +QG PVVYSAEAHR+FVTGFR+              XXXXXXXXXXXXXX                     G  S V+ST FQ ++G VTA+VQP+D  + A L K   EV   P E   ++   ++KD   S +  + S  KLGVVKP KK  KRK S+TH LSKG+LRKA+LRRR+EAR  +S
Sbjct:    1 MPSISRKQQGPPVVYSAEAHRQFVTGFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSQVKSTEFQCADGTVTAIVQPMDTAQSAYLLKK-NEVEDHPKEKGSEEKVATSKDEEKSTNEKSTSASKLGVVKPSKKIGKRKTSFTHLLSKGHLRKAKLRRRREARHKSS 191

[Close]

BLAST of Ggra8315.t1 vs. uniprot
Match: S0F399 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F399_CHOCR)

HSP 1 Score: 60.1 bits (144), Expect = 1.040e-7
Identity = 76/187 (40.64%), Postives = 96/187 (51.34%), Query Frame = 0

Query:    6 RGRQGAPVVYSAEAHREFVTGFRQRKMQRRQIAQKRAAXXXXXXXXXXXXXXRDVFRTNRERIQA---DFEDEEENGSSTVQSTRFQGSEGVVTAVVQPLDFEKPALLPKAPQEVVKSPNEVEDKQSSESAKDSGSPSTKSVPKLGVVKPKKKSW-----KRKISYTHKLSKGNLRKAQLRRRKEAR 184
            +GR+   V+Y  +AHREFVTGFR RK  RRQ       XXXXXXXXXXXXXX        E+ +    D +DE +    + + T +Q  + VVTAVV PL+    AL  +   E  K    V  K             T    K G++   KK+      KR++SYTH LSK N RK QL+RRK  R
Sbjct:   50 KGRRAPAVIYDPDAHREFVTGFRSRKQARRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSRGTLDDSDDEPKAEEISREETTYQTDDTVVTAVVAPLET---ALDKRVVHEKRKVAASVAQK------------GTGGKEKEGLILKAKKAQSTGGRKRRVSYTHTLSKVNKRKLQLKRRKAER 221

The following BLAST results are available for this feature:

BLAST of Ggra8315.t1 vs. uniprot

BLAST of Ggra8315.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IKC0	5.470e-21	47.92	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
S0F399	1.040e-7	40.64	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..188
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 12..78 e-value: 2.2E-10 score: 41.2
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 8..186

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000958_pilon	contig	tig00000958_pilon:155310..155876 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8315.t1	Ggra8315.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000958_pilon 155310..155876 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8315.t1 ID=Ggra8315.t1|Name=Ggra8315.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPEAYRGRQGAPVVYSAEAHREFVTGFRQRKMQRRQIAQKRAAEQQKKER
REERKQRRDVFRTNRERIQADFEDEEENGSSTVQSTRFQGSEGVVTAVVQ
PLDFEKPALLPKAPQEVVKSPNEVEDKQSSESAKDSGSPSTKSVPKLGVV
KPKKKSWKRKISYTHKLSKGNLRKAQLRRRKEARKNAS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019186	Nucleolar_protein_12