Ggra8286.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8286.t1
Unique NameGgra8286.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Homology
[Close]
BLAST of Ggra8286.t1 vs. uniprot
Match: A0A2V3IHV1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHV1_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 6.110e-16
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 0 
Query:    1 MRLRAGALALLQATLTVLTTGGATLWVVLTEPRRARRLPFYSDATHAEPARALLALGENAALLLALLVALAERAXXXXXXXXXXXXXXXXXXXXXXXXXXXARLHWRAAQVALLAWLVTANTPTLRPWLRAHQLAASTLML 141
            MR+RA  L +LQA    +TT  + L VV   P R R +PFYSDA+H EP R++L+LGENAAL+   L   AE                              +++     VA+  W VTAN PT+RP +  HQL AS LM+
Sbjct:   28 MRIRASTLGMLQAVTISVTTMASVLLVVGLRPNRKRFIPFYSDASHNEPERSVLSLGENAALVFGTLTQTAE----------YEWLRALAKRSGNENMRVFVKMYGWCGAVAMTCWFVTANVPTVRPVIEVHQLGASLLMV 158
The following BLAST results are available for this feature:
BLAST of Ggra8286.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHV16.110e-1639.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:243291..245103 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8286.t1Ggra8286.t1Gracilaria gracilis GNS1m malemRNAtig00000179_pilon 243291..245103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8286.t1 ID=Ggra8286.t1|Name=Ggra8286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MRLRAGALALLQATLTVLTTGGATLWVVLTEPRRARRLPFYSDATHAEPA
RALLALGENAALLLALLVALAERALLRRLLTAAASLPPHHHPHHHHTAAA
AARLHWRAAQVALLAWLVTANTPTLRPWLRAHQLAASTLMLTHQRRRAPI
GPPFQPQTPSPTAPIAHVHFSLPLPQRHAAAAASGAQPIPPPQL*
back to top