Ggra8282.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8282.t1
Unique NameGgra8282.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Homology
BLAST of Ggra8282.t1 vs. uniprot
Match: A0A2V3INU1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INU1_9FLOR)

HSP 1 Score: 514 bits (1325), Expect = 1.570e-175
Identity = 274/533 (51.41%), Postives = 373/533 (69.98%), Query Frame = 0
Query:    3 LSSAAPASASTL-----TLHVGIGQFFLIILLVTELVLRPLQELFKDDIVHCAARRSVTNGNVVRIRSAPLVLRALGTGTLVTG-----RSRGIAVTQIIRIFLLIFLIAATALFDRKIDEDQLAIVSTFSTAALTGDAVNVPEGQAILMSPVPLFGISEENAGNIDSFSPTGSNSSSDYAVREDPNLASQFVSSCVRRVNDSYTVVYIGAVIRKDGVQRVQCLDGTNDSENRTAAVFFSNPPATNQPSVRTVTLSPLRNEDGFSSDRISGVFAAEVVDDNGVRYRGYIAVTKRSHFNSNVPWSMYGVVRSTGPFIYRVTIPLYKARVSDPEMLPCFDELPSLRYVGNWSFDGDQYICPDGIGQPMDRVEHEELQSISLEIFSGSKEVEYEANGDLLAWLLETDFARFVGAQTFAMEMRTRVRSDRMFYSRYEGETITVTTGEKEDVVTIGLWETFLILGAISVVLLSIFFSFVWKVYQRRKLEIQSDVVSIESVATMYASEVRKCAYPEKILLQVGLIKDPDGGAHLGIVEK 525
            + +A P+   TL     +L   IGQF LI+LLV ELVLRPLQELFKD  V+CAAR  V+ GN ++IRSAP +LRA+G    V+      R R +A +Q+ RI LL+FLI A A+F+R +D+ +LA VSTFST++   D+++V  GQ +LMSP P+FG++E+ A +I  F  +G+NSSS Y VRE PNLA+Q++SSCVR++NDSYTVVY+GAV++ +G Q V CLDGT  SENRTAA FFS+ P     +V+++TLS L NE G SSD I+GVFAA++VD+N   Y+GY AVTKRSH++SNV WS+Y +VR    F++RV++ LYK+  +  +  PCF E PSL+Y G W+FD D+YICPDG  +P  R E ++LQ++SLE+F  S + E   NGDLLAWL+ETD+ARFV A+ F  E+R+RVRSDRMFYS +EGE + V  G  ++VV +G  +T + L AI+ +LL  F S +    Q R+L + S++VS ++VA MY SE    A    + L VGLI       HLG+V++
Sbjct:    1 METAPPSVDGTLGPSVYSLQTNIGQFLLILLLVNELVLRPLQELFKDHWVYCAARSVVSGGNAIQIRSAPRLLRAIGIENFVSSPESRPRCRLLA-SQMFRIVLLVFLIIAAAIFERTVDQKRLATVSTFSTSSPANDSISVKTGQTMLMSPFPVFGLTEQEARDIAPFQSSGTNSSSKYIVREHPNLAAQYISSCVRQLNDSYTVVYVGAVVQAEGRQTVMCLDGTGGSENRTAARFFSSSPGVTGVNVKSITLSRLSNEKGLSSDSITGVFAADIVDENDKEYKGYAAVTKRSHYDSNVVWSVYALVRRDDSFVWRVSVRLYKSGQTVCDARPCFGENPSLKYTGTWTFDDDEYICPDGEPRPFIRKEKDKLQTVSLEMFPASNQNESANNGDLLAWLIETDYARFVAAEVFEWELRSRVRSDRMFYSIHEGERLAVADGGVKEVVVMGRTQTVVFLTAIATLLLFTFVSSISNCVQSRRLNLGSEIVSFQAVAGMYRSESGSKAPTRDVALNVGLIDTAHDTQHLGLVDE 532          
The following BLAST results are available for this feature:
BLAST of Ggra8282.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INU11.570e-17551.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 448..467
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 468..529
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..447
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..90
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 445..467
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:226950..228539 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8282.t1Ggra8282.t1Gracilaria gracilis GNS1m malemRNAtig00000179_pilon 226950..228539 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8282.t1 ID=Ggra8282.t1|Name=Ggra8282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MDLSSAAPASASTLTLHVGIGQFFLIILLVTELVLRPLQELFKDDIVHCA
ARRSVTNGNVVRIRSAPLVLRALGTGTLVTGRSRGIAVTQIIRIFLLIFL
IAATALFDRKIDEDQLAIVSTFSTAALTGDAVNVPEGQAILMSPVPLFGI
SEENAGNIDSFSPTGSNSSSDYAVREDPNLASQFVSSCVRRVNDSYTVVY
IGAVIRKDGVQRVQCLDGTNDSENRTAAVFFSNPPATNQPSVRTVTLSPL
RNEDGFSSDRISGVFAAEVVDDNGVRYRGYIAVTKRSHFNSNVPWSMYGV
VRSTGPFIYRVTIPLYKARVSDPEMLPCFDELPSLRYVGNWSFDGDQYIC
PDGIGQPMDRVEHEELQSISLEIFSGSKEVEYEANGDLLAWLLETDFARF
VGAQTFAMEMRTRVRSDRMFYSRYEGETITVTTGEKEDVVTIGLWETFLI
LGAISVVLLSIFFSFVWKVYQRRKLEIQSDVVSIESVATMYASEVRKCAY
PEKILLQVGLIKDPDGGAHLGIVEKDSVV*
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