Ggra8271.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8271.t1
Unique NameGgra8271.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Homology
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A2V3IKM6 (Zinc finger protein GLIS2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKM6_9FLOR)

HSP 1 Score: 275 bits (702), Expect = 4.400e-89
Identity = 146/274 (53.28%), Postives = 196/274 (71.53%), Query Frame = 0
Query:    1 MNGMHHLQQHAELRAALQSTVSRPTAGNVCPVCHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVRAHHDASETAGVSLRAANDVHGNKGNTKAQNSAVVKKPVRPTASISHSPGIQKSQRKRAPKASKAAKKRESSTSTLSFKASLAPPYTEPDLTPLLTISADPLKLDDECDSSEAELLCVLPDVLSGDTDILDEGDDLCSSVPSTFADDPLEGSTDLRLFLVSGPDDVDNAQLDALDQDASLKAAVEATNLPLNEYAWM 274
            M+GM++LQQH + +  +Q T  R T+GN+CPVC K FDRMYNLKVHFRKHTGETPY+CPV NCSKQFRWRSSMAHHVRAHHDASETAGVSL+ + D +G+K  T+  +S   KK V  T  +S   GI+KSQRKR    +K AKKR+++ S  + + S+  P+ +P+  PLL+ISADP++   E +S +  L  + PD LSG T+IL+  D L       F +DPL   +D+ LFLVS PDD +NA+L+++ +DA+L+AAVEA  +P+++Y  M
Sbjct:   10 MSGMYNLQQHQQFQPVVQVTTPRSTSGNICPVCSKTFDRMYNLKVHFRKHTGETPYSCPVRNCSKQFRWRSSMAHHVRAHHDASETAGVSLKTSTDANGSKSATRTTSSP--KKSVVATRPLSDLGGIKKSQRKRK---TKTAKKRQNAVSPSAPRDSVIEPFAQPESPPLLSISADPVRQGHEYESVDTALFDIFPDELSGQTEILENVDGLQPPDFPAFTEDPLNDHSDVMLFLVSSPDDAENAELESIARDATLRAAVEAVAMPVSQYNLM 278          
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A7S3EJL1 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJL1_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0
Query:   21 VSRPTAGNV----CPVCHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVRAH 80
            VS+P A +     C  CHK F + YNLK+H R HTGETP+ C    CS +F+WRSS+ +H+R H
Sbjct:   51 VSKPEAKSPKTYECSHCHKQFKKRYNLKIHQRSHTGETPFECSFEGCSLKFKWRSSLINHLRYH 114          
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A7S0BUE7 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BUE7_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 7.520e-11
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0
Query:   30 CPVCHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVRAH 80
            C  CHK F + YNLK+H R HTGETP+ C    CS +F+WRSS+ +H+R H
Sbjct:   64 CSHCHKQFKKRYNLKIHQRSHTGETPFECSFEGCSLKFKWRSSLINHLRYH 114          
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A1X6P9B5 (C2H2-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9B5_PORUM)

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-9
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0
Query:   23 RPTAGNV-----CPVCHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHV 77
            RP +G       C VC + F R++N KVH RKH  ETP  CP+  C + F+WR S+AHH+
Sbjct:  471 RPRSGTADQVYPCEVCGRGFKRLFNRKVHMRKHGEETPVVCPIPGCERSFKWRGSLAHHL 530          
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A5J4Z439 (Zinc finger protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z439_PORPP)

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-9
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   18 QSTVSRPTAGNVCPV--CHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVRAHHDASE 85
            + +V+ P    VCP   C   F R  N+KVH R+HTGE PY C   +CS+ F+W+SS+ HH+  H++  E
Sbjct:  303 KKSVATPPQKFVCPSAGCLMEFTRRDNMKVHMRRHTGEMPYKCFYPDCSRMFKWKSSLNHHIGTHYEGLE 372          
BLAST of Ggra8271.t1 vs. uniprot
Match: N4TQD2 (Zinc finger protein C25B8.19c n=2 Tax=Fusarium oxysporum f. sp. cubense TaxID=61366 RepID=N4TQD2_FUSC1)

HSP 1 Score: 60.5 bits (145), Expect = 3.520e-7
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 0
Query:    6 HLQQHAE-LRAALQSTVSRPTAGNVCPVCHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVR 78
            +LQQH   L  AL     +    ++C  C KAF R  +L+ H R HTGE P+ CP H CS+ F  RS+M  H R
Sbjct:  168 YLQQHKHHLPCALHPRKDK----HICSTCKKAFSRPSSLETHRRSHTGEKPFKCPHHGCSRTFGVRSNMKRHER 237          
BLAST of Ggra8271.t1 vs. uniprot
Match: A0A7S0BM20 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BM20_9RHOD)

HSP 1 Score: 60.8 bits (146), Expect = 3.600e-7
Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 0
Query:   33 CHKAFDRMYNLKVHFRKHTGETPYTCPVHNCSKQFRWRSSMAHHVRAHHDASETAGVSLRAANDVHGN-KGNTKAQNSAVVKKPVRPTASIS 123
            C K F     L+ H R HTG +PY CP  NCS+ F+WRSS+A H ++H         + +AAN   G  K  T A +     K ++ T  +S
Sbjct:  100 CGKVFTSAPGLREHERFHTGSSPYMCPEKNCSRSFKWRSSLAMHKKSH---------AFKAANGKRGRRKRKTTASSEGESAKKIKTTMDVS 182          
The following BLAST results are available for this feature:
BLAST of Ggra8271.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IKM64.400e-8953.28Zinc finger protein GLIS2 n=1 Tax=Gracilariopsis c... [more]
A0A7S3EJL13.100e-1150.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BUE77.520e-1154.90Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P9B52.000e-946.67C2H2-type domain-containing protein n=1 Tax=Porphy... [more]
A0A5J4Z4393.000e-942.86Zinc finger protein n=1 Tax=Porphyridium purpureum... [more]
N4TQD23.520e-743.24Zinc finger protein C25B8.19c n=2 Tax=Fusarium oxy... [more]
A0A7S0BM203.600e-736.96Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 28..50
e-value: 0.042
score: 23.0
coord: 56..80
e-value: 0.0023
score: 27.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 58..81
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 30..50
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 28..55
score: 13.047947
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 56..85
score: 10.803371
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 52..91
e-value: 1.4E-8
score: 36.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 29..51
e-value: 5.4E-9
score: 37.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..158
NoneNo IPR availablePANTHERPTHR19818:SF143LD47926P-RELATEDcoord: 28..82
NoneNo IPR availablePANTHERPTHR19818ZINC FINGER PROTEIN ZIC AND GLIcoord: 28..82
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 29..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:93761..94688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8271.t1Ggra8271.t1Gracilaria gracilis GNS1m malemRNAtig00000179_pilon 93761..94688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8271.t1 ID=Ggra8271.t1|Name=Ggra8271.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MNGMHHLQQHAELRAALQSTVSRPTAGNVCPVCHKAFDRMYNLKVHFRKH
TGETPYTCPVHNCSKQFRWRSSMAHHVRAHHDASETAGVSLRAANDVHGN
KGNTKAQNSAVVKKPVRPTASISHSPGIQKSQRKRAPKASKAAKKRESST
STLSFKASLAPPYTEPDLTPLLTISADPLKLDDECDSSEAELLCVLPDVL
SGDTDILDEGDDLCSSVPSTFADDPLEGSTDLRLFLVSGPDDVDNAQLDA
LDQDASLKAAVEATNLPLNEYAWM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf