Ggra8261.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8261.t1
Unique NameGgra8261.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Homology
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BLAST of Ggra8261.t1 vs. uniprot
Match: A0A2V3J6Z8 (Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Z8_9FLOR)

HSP 1 Score: 693 bits (1788), Expect = 1.020e-246
Identity = 341/474 (71.94%), Postives = 405/474 (85.44%), Query Frame = 0 
Query:    1 MGALVNTTEHAPEHPNALKIHVALDQNANRNPLEFLRLLHTLSGTNPNSIAPVLTGLTHHTVNLHLYPPTSPLHQLTRAALKLDLHAISPTDKTPNPALQTFVTFLTNLISAHADYIQPVFKMIAKRVFTMSVAQHSLLAAMDTVIFSALRTYPRSRNVLLSTMQSSYPHPIRPPVEHLSFSRATLRLAKEPTLAPSLLVTLFERLAAIEALVPHQVFANES-SELCMEAERLEHVLLELCSFFEQRGSFEAAFTAYQIYIVPVDAARFSPYSLLFAATVQQSSDTLYDVVERLYQSFHNPSIPLRLRERFLEHSAAIVLRAKAYEPHRVFKWVSRLAAWLNAYIDAARGNDFIDVDVHSSFYVAVAVMLRVMTARSDAFQDAEMLNNMRLYRIISSSMNPTLMLPNPLVNAFAKAMSSKCEVDYQDIVQENEGRFPPSRTVYGSRNEYRYRLVCPDVTLPRFREKLDEFVVWD 473
            MGA VN   H P HPNALKIHVALDQNANRNPLEFLRLLH LSGTNP+SI P+LTGLTHHTVNLHLYP TSPLHQLTRAALKLDLHAISPTDKTPNPALQ FV+FLTNLISAHADYI+PVF+MI KR FTMS A+  LL+AM +V+FSAL T+PR+R++LLST+QSSYPHP+RPP EHL F+RATLRLAKEP L  SLLVTLFER+AAIEALVPH VFAN+S S+L MEAERLE VLLELC+FFE+ GS EAAF+AYQ++IVP+DA R+SPY+LLF A V + + TL+D+VERL+QSFH+P  P RLRERFLEH+ ++VLRA+ Y    V +WV+RLA WLNAYIDAARGND IDVD+H SFY AVAV+LRVMT R +AF+D E+L+NMRLYRI+SS MNP ++LP  LV++F + + + C VDY+D++ E+EG FPPSRT+YGS+NE+ YR+VCPD  LPR R +L+  V+WD
Sbjct:    1 MGAAVNALGHVPAHPNALKIHVALDQNANRNPLEFLRLLHALSGTNPHSITPILTGLTHHTVNLHLYPSTSPLHQLTRAALKLDLHAISPTDKTPNPALQAFVSFLTNLISAHADYIEPVFQMIVKRAFTMSAARDCLLSAMHSVVFSALHTHPRARSILLSTVQSSYPHPVRPPAEHLCFARATLRLAKEPHLVSSLLVTLFERVAAIEALVPHTVFANDSRSQLGMEAERLEVVLLELCNFFEEGGSVEAAFSAYQMFIVPMDAVRYSPYALLFGAAVAKDTSTLHDIVERLWQSFHDPCTPSRLRERFLEHAGSMVLRARCYNSDHVVRWVARLAGWLNAYIDAARGNDVIDVDIHLSFYTAVAVLLRVMTRRCEAFKDEEVLSNMRLYRIVSSGMNPFVVLPRALVDSFVETVMNTCGVDYRDVIVESEGVFPPSRTLYGSKNEFVYRIVCPDFELPRLRARLNAHVLWD 474
The following BLAST results are available for this feature:
BLAST of Ggra8261.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6Z81.020e-24671.94Putative RRN3-like protein RRN3P1 n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 248..428
e-value: 2.9E-10
score: 39.3
coord: 20..211
e-value: 2.7E-10
score: 39.4
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 34..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 476..505

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000179_piloncontigtig00000179_pilon:31615..33132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8261.t1Ggra8261.t1Gracilaria gracilis GNS1m malemRNAtig00000179_pilon 31615..33132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8261.t1 ID=Ggra8261.t1|Name=Ggra8261.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MGALVNTTEHAPEHPNALKIHVALDQNANRNPLEFLRLLHTLSGTNPNSI
APVLTGLTHHTVNLHLYPPTSPLHQLTRAALKLDLHAISPTDKTPNPALQ
TFVTFLTNLISAHADYIQPVFKMIAKRVFTMSVAQHSLLAAMDTVIFSAL
RTYPRSRNVLLSTMQSSYPHPIRPPVEHLSFSRATLRLAKEPTLAPSLLV
TLFERLAAIEALVPHQVFANESSELCMEAERLEHVLLELCSFFEQRGSFE
AAFTAYQIYIVPVDAARFSPYSLLFAATVQQSSDTLYDVVERLYQSFHNP
SIPLRLRERFLEHSAAIVLRAKAYEPHRVFKWVSRLAAWLNAYIDAARGN
DFIDVDVHSSFYVAVAVMLRVMTARSDAFQDAEMLNNMRLYRIISSSMNP
TLMLPNPLVNAFAKAMSSKCEVDYQDIVQENEGRFPPSRTVYGSRNEYRY
RLVCPDVTLPRFREKLDEFVVWDPVPEDDGDDGEVERKGEEVNDTMDCDE
VGGAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3