Ggra826.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra826.t1
Unique NameGgra826.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Homology
BLAST of Ggra826.t1 vs. uniprot
Match: A0A2V3IRS4 (Exosome complex component RRP46 n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRS4_9FLOR)

HSP 1 Score: 383 bits (983), Expect = 3.820e-132
Identity = 197/262 (75.19%), Postives = 231/262 (88.17%), Query Frame = 0
Query:    4 MDIDTPPFRGQGTGVDATLGMKTETSAGRRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHNNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLEQKAAIRHIWNA 265
            MD D+  FRG+G+GVDA LGM+TE++AGRRDGRS GEMRAM+ S+GEL+RADGSAR+RLG TDV+V IYGP++CPHNKQ  EA+HVHVA+ RRE M S+++GA+     ES++TRDL+A V+DVVLA LHPRKAVVVAVQVL+DSGGV+ AAINATT+AL+DAGL +RALPLAASVSIHNNA+IVDPV+VEEREA AVV I  DTALE DDGFMSVYT+GDCGGEE+FAA V VCRQLVVKTRAF RLSLE+KAA+ HIWNA
Sbjct:    1 MDADSLSFRGEGSGVDAMLGMRTESTAGRRDGRSHGEMRAMSVSYGELTRADGSARVRLGTTDVLVAIYGPIECPHNKQDAEAVHVHVAFGRREAM-SNVAGAETGAGTESMITRDLEALVSDVVLATLHPRKAVVVAVQVLADSGGVICAAINATTIALIDAGLPLRALPLAASVSIHNNAIIVDPVVVEEREADAVVCIVFDTALENDDGFMSVYTMGDCGGEELFAATVEVCRQLVVKTRAFFRLSLERKAAVHHIWNA 261          
BLAST of Ggra826.t1 vs. uniprot
Match: R7Q866 (Exosome component 5 Rrp46 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q866_CHOCR)

HSP 1 Score: 276 bits (707), Expect = 5.020e-90
Identity = 151/263 (57.41%), Postives = 188/263 (71.48%), Query Frame = 0
Query:    7 DTPPFRGQGTGVDATLGMKTETSAGRRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERM---GSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHNNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLEQKAAIRHIWNAS 266
            D   F G GTGVDA  G  T  SAGRRDGRS  EMR+++ SHG L  ADGSAR+RLG TDV+V +YGPM CP  +Q  E +HV VA+RRR      G+   G       E++  RDL+  V ++V+A LHPRKA VVAVQVL+D+GGV+AAAIN T MAL+DAG+ MRA+P AASVS++N A++VDPVL+EE EA  V+T   DT+L  ++GFMSVYT GDC G+ +FAAA+   R L +KT AFL+LSLEQKAA R  WN +
Sbjct:   12 DALEFSGVGTGVDAMSG--TPLSAGRRDGRSASEMRSLSISHGPLVAADGSARVRLGATDVVVAVYGPMGCPVPRQDAEQMHVSVAFRRRAGTTSGGAGGKGDSINAGKEAIAGRDLKKVVEEIVMAILHPRKAAVVAVQVLADNGGVIAAAINGTVMALVDAGMPMRAVPSAASVSLYNGAIVVDPVLIEEVEADGVITFVFDTSLADENGFMSVYTDGDCTGDSMFAAALETSRDLALKTMAFLKLSLEQKAAQRLTWNTT 272          
BLAST of Ggra826.t1 vs. uniprot
Match: exosome complex component RRP41-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA4FB (exosome complex component RRP41-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA4FB)

HSP 1 Score: 199 bits (507), Expect = 6.970e-60
Identity = 116/245 (47.35%), Postives = 160/245 (65.31%), Query Frame = 0
Query:   13 GQGTGVDATLGMKTETSAGRRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADAT---VSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHNNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLE 254
            G G+G DA LG+ T   AGRRDGR  G MR ++A+ G+L R DGS+RIR+G TDV+V +YGPM+CP ++Q V+   VHV++R      SS   A AT   +  E+V  RDL+  V   V+  LHPRKA+ +AV VLSD GG  AAAINAT +AL+DAG+++R++  AA V++HNNA+IVDP  VEE EA AV+T+T +T        +  Y  G  G  E + +AV   R++   TR F+ L+++
Sbjct:   17 GGGSGSDAALGICTSQRAGRRDGRGAGTMREISATQGDLLRCDGSSRIRIGLTDVLVAVYGPMECPVHRQLVDRADVHVSFRHHA--SSSTMNAFATRKSLPGEAVAARDLREIVLQSVIVKLHPRKAIAIAVHVLSDDGGASAAAINATFLALVDAGVSLRSVLTAACVTVHNNAIIVDPEAVEEAEADAVITLTFETKKGTSANVVGSYCHGVLGSYENYQSAVQTARKISDGTREFMELAVK 259          
BLAST of Ggra826.t1 vs. uniprot
Match: D7FVT2 (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.790e-25
Identity = 81/230 (35.22%), Postives = 125/230 (54.35%), Query Frame = 0
Query:   32 RRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNK-QQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAAS----VSIHNNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLEQK 256
            RRDGR   ++R + A  G L+RADGSAR   G T V+  +YGP      + ++ E   + V+++    + SS   ADA   +E++L R L+    +VVL + +PR  V V +QV+ D G V++AA+NA TMALL+AG+ M  + L+ +     ++   ++++DP   EE +A A   +     L    G +S + +G    EE FA   A         R+F+RLS EQK
Sbjct:    5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSS---ADA--ESEALLRRSLE----EVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVA---TLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTA-VRSFVRLSAEQK 221          
BLAST of Ggra826.t1 vs. uniprot
Match: A0A835ZF16 (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.320e-21
Identity = 79/243 (32.51%), Postives = 120/243 (49.38%), Query Frame = 0
Query:   32 RRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMD-CPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHNNA-----------------LIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLEQK 256
            R DGR+  ++R + A  G L+RADGS R   G T V+V +YGP       K++ +   + V++R  +       GA  +   E  L   ++ T+ + V  A +PR  + V VQVL D G V++AAINA  MAL+DAG+ M  +P+AA+     +                  L +DP   EE    A V + +   L   DG +++   G  G EE+FAA+ A  R+       +LR ++E K
Sbjct:    6 RFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADK-------GAQTSADAERELY--VRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAV---LAGSDGILTMKMTGQLGAEELFAASEAA-RKACDAVSVYLRRAVEAK 235          
BLAST of Ggra826.t1 vs. uniprot
Match: A0A1Y2CMS4 (Ribosomal protein S5 domain 2-like protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CMS4_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 5.270e-21
Identity = 70/231 (30.30%), Postives = 122/231 (52.81%), Query Frame = 0
Query:   29 SAGRRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIH-NNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLRLSLEQKAA 258
            S GR D   + ++R ++AS G LSRADGS+R   G T+V+  ++GP +     +++++  + ++ R    +   L           +  R L+  +   VLA++HPR A+ V +QV  D G  ++AA+NA ++ALLDAG+A R L  + +++   N  L++DP L E   A +V T T   +   +D  ++  +      ++ +  A  V +Q      +F R ++EQK A
Sbjct:    3 SNGRTD---EHQLRPLSASFGVLSRADGSSRFGFGTTEVLASVFGPKEVRIRDEKIDSATLQISVRPLNGLSGPL---------HRLAERQLRDLIEAAVLASIHPRSAIQVTIQVTGDDGCFMSAAVNAASLALLDAGVAQRHLLASVTLAFDPNGTLLLDPSLKELETAKSVHTFTFSNS---NDAVIAGVSSEGVYSQDEYKQACTVAQQACATIHSFYRKTMEQKLA 218          
BLAST of Ggra826.t1 vs. uniprot
Match: A0A2G4SM17 (Ribosomal protein S5 domain 2-like protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SM17_RHIZD)

HSP 1 Score: 97.8 bits (242), Expect = 6.010e-21
Identity = 69/226 (30.53%), Postives = 110/226 (48.67%), Query Frame = 0
Query:   40 EMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHN-NALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGG---EEIFAAAVAVCRQLVVKTRAFLRLSLEQKAAIRH 261
            ++RA +A+   L RADGSAR  LG T VI  + GPM+     ++++   V V  R    + S+          E ++   L+ T   ++L  + PR  V + VQ++ D G V+AAA+NA  +ALLDAG+ ++ +  + +  I   N +I+DP   E   A +V T   D         +S     D  G   EE +     +C Q V +  +F+R ++E K    H
Sbjct:   12 QLRAFSATQNVLHRADGSARFDLGATSVICSVSGPMEVQLRDEKLDEATVEVVVRPSSGIAST---------KEKLIENTLRTTFEPIILGGMMPRTLVQIVVQIIKDDGSVIAAAVNAIALALLDAGIPLKYMAASVTCMIDKTNNIILDPTAAELENAKSVHTFAFDNTPRTTTVLLS-----DSSGVFSEEEYIECYDLCHQAVGQVHSFIRAAVEAKKQKEH 223          
BLAST of Ggra826.t1 vs. uniprot
Match: A0A6J3EMB3 (exosome complex component RRP46 n=3 Tax=Anseriformes TaxID=8826 RepID=A0A6J3EMB3_AYTFU)

HSP 1 Score: 96.7 bits (239), Expect = 1.290e-20
Identity = 72/200 (36.00%), Postives = 106/200 (53.00%), Query Frame = 0
Query:   41 MRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIH-NNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCR 239
            +R  +   G LSR DGSA    G T V+ G+YGP +   +K+  E   + V  R +      L G     S E +L +  +A    VVL ALHPR A+ + +QVLSD+G +++  +NA  M LLDAGL + AL    + ++    A+++DP   +E+EA AV+T  ID+  +K    +   T G C  EE+    VA  R
Sbjct:    8 LRPFSCEQGLLSRPDGSAAFVQGDTSVLAGLYGPAEVRGSKESPERATLEVLLRPKV----GLPGVGER-SREQLLRQTCEA----VVLGALHPRTAITLVLQVLSDAGSLLSCCLNAACMGLLDAGLPLSALFCGVTCALDAQGAIVLDPTTRQEQEARAVLTFAIDSTEKK---VLMATTRGSCSVEEMQQCLVAAQR 195          
BLAST of Ggra826.t1 vs. uniprot
Match: S2JKZ7 (Uncharacterized protein n=3 Tax=Mucor TaxID=4830 RepID=S2JKZ7_MUCC1)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-20
Identity = 72/233 (30.90%), Postives = 118/233 (50.64%), Query Frame = 0
Query:   30 AGRRDGRSQG-EMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMR--ALPLAASVSIHNNALIVDPVLVEEREAHAVVTITIDTALEKDDGFMSVYTIGDCGG---EEIFAAAVAVCRQLVVKTRAFLRLSLEQK 256
            A R D R+   ++RA +AS   L+RADGS++   G T VI  + GPMD     ++++   V V  R  + + ++          E ++   L+     V+L  + PR  V + +Q+  D G ++AA++NA T+ALLDAG+ M+  A  + A +    N L++DP  VE   A +V T   D    K    +S     D  G   E+ + +   +C + V K + FLR+++E K
Sbjct:    2 ANRPDRRTDNTQLRAFSASQNILNRADGSSKFEFGSTSVICSVSGPMDVQIRDEKLDEATVEVVVRPAKGVATT---------REKLMESILRTAFEPVILGGMLPRTLVQIVIQITKDDGAILAASVNAITLALLDAGIPMKHMAAAITAMIDSKTNELVLDPTAVELENAKSVHTFAFDNVNTKPMVLLS-----DSEGLFSEDEYFSCHDLCFEAVEKVQGFLRVAVESK 220          
BLAST of Ggra826.t1 vs. uniprot
Match: A0A8J6C8B2 (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8B2_DIALT)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-20
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 0
Query:   32 RRDGRSQGEMRAMTASHGELSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMGSSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGGVVAAAINATTMALLDAGLAMRALPLAASVSIHNN----ALIVDPVLVEEREAHAVVTI 204
            RRDGRS   +R M    G L RADGSAR     T V+V +YGP +    ++++E   V V  R           A    + E  +   L      +++ ALHPR A+ + VQ++ D G   AAAINAT +AL+DAG+A+RA+P A ++++  +    + ++DP   EE  A   +TI
Sbjct:    6 RRDGRSAAMLRPMACERGVLRRADGSARYSHDLTSVLVAVYGPCEVKKRREELERATVEVIVR---------PPAGPPRAREREMEAQLHGLFAPLIVGALHPRTAISIVVQLVDDDGSACAAAINATAVALMDAGVALRAMPSAVALALGADGDAASALLDPCRSEEERAAGALTI 173          
The following BLAST results are available for this feature:
BLAST of Ggra826.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRS43.820e-13275.19Exosome complex component RRP46 n=2 Tax=Gracilario... [more]
R7Q8665.020e-9057.41Exosome component 5 Rrp46 n=1 Tax=Chondrus crispus... [more]
exosome complex component RRP41-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA4FB6.970e-6047.35exosome complex component RRP41-like n=1 Tax=Merce... [more]
D7FVT22.790e-2535.22RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF162.320e-2132.51Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A1Y2CMS45.270e-2130.30Ribosomal protein S5 domain 2-like protein n=1 Tax... [more]
A0A2G4SM176.010e-2130.53Ribosomal protein S5 domain 2-like protein n=4 Tax... [more]
A0A6J3EMB31.290e-2036.00exosome complex component RRP46 n=3 Tax=Anseriform... [more]
S2JKZ71.300e-2030.90Uncharacterized protein n=3 Tax=Mucor TaxID=4830 R... [more]
A0A8J6C8B21.300e-2036.16Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 40..168
e-value: 1.7E-20
score: 73.9
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 30..262
e-value: 2.6E-43
score: 150.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 24..256
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 32..195
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 170..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:224251..225051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra826.t1Ggra826.t1Gracilaria gracilis GNS1m malemRNAtig00000906_pilon 224251..225051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra826.t1 ID=Ggra826.t1|Name=Ggra826.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MSGMDIDTPPFRGQGTGVDATLGMKTETSAGRRDGRSQGEMRAMTASHGE
LSRADGSARIRLGGTDVIVGIYGPMDCPHNKQQVEALHVHVAYRRRERMG
SSLSGADATVSNESVLTRDLQATVTDVVLAALHPRKAVVVAVQVLSDSGG
VVAAAINATTMALLDAGLAMRALPLAASVSIHNNALIVDPVLVEEREAHA
VVTITIDTALEKDDGFMSVYTIGDCGGEEIFAAAVAVCRQLVVKTRAFLR
LSLEQKAAIRHIWNAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf