Ggra8256.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8256.t1
Unique NameGgra8256.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Homology
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A2V3ITB9 (Myocyte-specific enhancer factor 2D-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITB9_9FLOR)

HSP 1 Score: 98.2 bits (243), Expect = 1.240e-18
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 0
Query:    1 MTSDNQELPPAASLPPPSQRRGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNI 106
            M  D +   P++S+PP    R + ++ RI DNR RQ+T+ +RK  LL+K +EL ILCD EI +I+YN H  KL E+SS+ M+ +LNRYA YSG  ER++ +   ++
Sbjct:    1 MNPDKENYHPSSSIPPTQDGRRKIRIQRIQDNRSRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNVHNGKLFEYSSIDMDKVLNRYATYSGPSERRKKDSFFDL 106          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A2V3J9R8 (Myocyte-specific enhancer factor 2D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9R8_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 4.690e-15
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNI 106
            R + ++ RI DNR RQ T+ +RK  L +K +EL +LCD EIG+I+YN H  KL E+SSV M+ +LNRYA+YSG  ER++ E   ++
Sbjct:   18 RRKIKIQRIEDNRSRQATFLKRKNGLFKKAMELGVLCDCEIGVIVYNVHNGKLFEYSSVDMDQVLNRYASYSGPSERRKRENFFDL 103          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A4W3GZ62 (MADS-box domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GZ62_CALMI)

HSP 1 Score: 72.4 bits (176), Expect = 2.880e-12
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNILSQE 110
            R + Q+ RI+D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N  TN+L +++S  M+ +L +Y  YS   E +   +IL  LS++
Sbjct:    3 RKKIQISRIVDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS-TNRLFQYASTDMDRVLLKYTEYSEPHESRTNTDILERLSRQ 91          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A4P9Y3G3 (MADS-box domain-containing protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y3G3_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 4.060e-12
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILN 105
            R + Q+  I+D R RQ+T+ +RK+ L++K  ELS+LCD EIGLI++N   NKL +FSS  M+ +L RY  Y    E + P +  N
Sbjct:    3 RRKIQIKTIVDERSRQVTFLKRKQGLMKKAFELSVLCDCEIGLIIFNSQ-NKLIQFSSTDMDRILLRYTEYPEPDEVRGPTDFAN 86          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A3Q4I258 (MADS-box domain-containing protein n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q4I258_NEOBR)

HSP 1 Score: 71.6 bits (174), Expect = 4.400e-12
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNIL 107
            R + Q+ RI+D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N  TN+L +++S  M+ +L +Y  YS   E +   +IL +L
Sbjct:    3 RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS-TNRLFQYASTDMDKVLLKYTEYSEPHESRTNTDILEVL 88          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A4W4G0I4 (MADS-box domain-containing protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4G0I4_ELEEL)

HSP 1 Score: 71.6 bits (174), Expect = 1.170e-11
Identity = 36/93 (38.71%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNILSQESSP 113
            R + Q+ RI D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N H+NKL +++S  M+ +L +Y  Y+   E +   +I+ +    ++P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEVTPSATTP 94          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A267F7D4 (MADS-box domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267F7D4_9PLAT)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-11
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNILSQESSPS 114
            R + Q+ RI D R RQ+T+ +RK  L++K  ELS+LCD E+ LI++N + N+L +++S  M+ LL RY +YS   E +  ++I+  L+++S  S
Sbjct:    3 RKKIQIARIEDERTRQVTFTKRKFGLMKKAYELSVLCDCEVALIVFNGN-NRLHQYASTDMDRLLLRYTDYSSPHESRTNKDIMEYLTRKSGAS 95          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A4W4E008 (MADS-box domain-containing protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4E008_ELEEL)

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-11
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNILSQESS 112
            R + Q+ RI+D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N  TNKL +++S  M+ +L +Y  Y+   E +   +I+ + S  SS
Sbjct:    3 RKKIQIARIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS-TNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEVGSPFSS 93          
BLAST of Ggra8256.t1 vs. uniprot
Match: A0A3Q2YEA1 (MADS-box domain-containing protein n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YEA1_HIPCM)

HSP 1 Score: 70.5 bits (171), Expect = 1.520e-11
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNI 106
            R + Q+ RI+D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N  TN+L +++S  M+ +L +Y  YS   E +   +IL +
Sbjct:    3 RKKIQISRIVDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS-TNRLFQYASTDMDKVLLKYTEYSEPHESRTNTDILEV 87          
BLAST of Ggra8256.t1 vs. uniprot
Match: myocyte-specific enhancer factor 2C-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C571 (myocyte-specific enhancer factor 2C-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C571)

HSP 1 Score: 71.6 bits (174), Expect = 1.530e-11
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 0
Query:   21 RGRAQLCRIIDNRKRQITYNRRKKCLLRKTLELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQPEEILNILSQESS 112
            R + Q+ RI D R RQ+T+ +RK  L++K  ELS+LCD EI LI++N  TNKL +++S  M+ +L +Y  YS   E +   +I+ +L+++ +
Sbjct:    3 RKKIQISRIGDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS-TNKLFQYASTDMDKILLKYTEYSEPHESRTNSDIIELLNKKEN 93          
The following BLAST results are available for this feature:
BLAST of Ggra8256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITB91.240e-1845.28Myocyte-specific enhancer factor 2D-like n=1 Tax=G... [more]
A0A2V3J9R84.690e-1550.00Myocyte-specific enhancer factor 2D n=1 Tax=Gracil... [more]
A0A4W3GZ622.880e-1242.22MADS-box domain-containing protein n=1 Tax=Callorh... [more]
A0A4P9Y3G34.060e-1244.71MADS-box domain-containing protein (Fragment) n=1 ... [more]
A0A3Q4I2584.400e-1242.53MADS-box domain-containing protein n=3 Tax=Ovalent... [more]
A0A4W4G0I41.170e-1138.71MADS-box domain-containing protein n=1 Tax=Electro... [more]
A0A267F7D41.210e-1140.43MADS-box domain-containing protein n=2 Tax=Macrost... [more]
A0A4W4E0081.300e-1141.30MADS-box domain-containing protein n=1 Tax=Electro... [more]
A0A3Q2YEA11.520e-1141.86MADS-box domain-containing protein n=1 Tax=Hippoca... [more]
myocyte-specific enhancer factor 2C-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C5711.530e-1140.22myocyte-specific enhancer factor 2C-like n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 56..77
score: 28.74
coord: 41..56
score: 46.06
coord: 21..41
score: 37.67
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 19..79
e-value: 2.0E-12
score: 57.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 28..76
e-value: 5.3E-14
score: 51.5
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 19..67
score: 16.974222
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 31..112
e-value: 1.8E-18
score: 68.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 21..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..177
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 21..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:303472..304876 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8256.t1Ggra8256.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 303472..304876 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8256.t1 ID=Ggra8256.t1|Name=Ggra8256.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MTSDNQELPPAASLPPPSQRRGRAQLCRIIDNRKRQITYNRRKKCLLRKT
LELSILCDLEIGLIMYNRHTNKLSEFSSVPMENLLNRYANYSGTIERKQP
EEILNILSQESSPSGSGSGPNGTVTERSEAAVAGQHQHAQEYEGSGDAQN
RSKKRKLSSGEARTSPTPTQEELTGQAQPSARAVIHPESNVGLIPGTARV
FGNNLLRQEVRATRTPSAPATEAQFQLPHATLPQSVSATPGRTPFQGRRD
ERPVENGHCVSESLNEYERPEITPANPNQASGIRVTNEVRAEQVGETRPP
NQFLLAGHNAMECTDAVGAEVDPPAGVEVDTPVDNSIPNVTRSEEGSRPE
SLEEVREQVLRFEEQIFGGRPTPRDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf