Ggra8251.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8251.t1
Unique NameGgra8251.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Homology
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BLAST of Ggra8251.t1 vs. uniprot
Match: A0A2V3IDG6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDG6_9FLOR)

HSP 1 Score: 102 bits (254), Expect = 1.080e-22
Identity = 67/120 (55.83%), Postives = 75/120 (62.50%), Query Frame = 0 
Query:  262 LVSDTDFELILGNLDVDAIVQATRKKQTVQTQPLTNSLTPSEPSTRQSFTAPDPIVSSIHTSSH-PILPPSQRASTPTDQHSSHPPQCQSNLNGAVAPAAAPAKPDLSALDEQTIDDLFD 380
            + +  DFE ILGNLDVDAIVQATR    VQ    TN + P EP+TR  FTAP             P +PPSQ  S+P DQ SSHP Q QS+ N A    AAPAKP LSAL +QTIDDLFD
Sbjct:   27 IATKIDFEAILGNLDVDAIVQATRNNHVVQNPSPTNFVPPPEPNTRPIFTAPHXXXXXXXXXXXXPTIPPSQYTSSPRDQPSSHPSQPQSSFNRA----AAPAKPVLSALGQQTIDDLFD 142
The following BLAST results are available for this feature:
BLAST of Ggra8251.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IDG61.080e-2255.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028045Homologous recombination OB-fold proteinPFAMPF15072HROBcoord: 32..120
e-value: 6.1E-8
score: 32.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:252623..253765 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8251.t1Ggra8251.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 252623..253765 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8251.t1 ID=Ggra8251.t1|Name=Ggra8251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MLRARQHQLPLRSSLALLRRNALMSCRAPLHHLPVLVDSLQPVGDDLSFV
LLDPTHSVRATISHSSLDAALRARLERGAVIVLNDVSNTLLLQAESAFAR
GHSHDVHLIIHRANISTVFSISDNLPLADMPSTTSSSQLKKWALQPYSQY
AAQPPPVPNVRMPHSVPTSYRLPRPSSSHSSTRTSTPTTSVRTNPPPQPT
LFNPSRISTSSRAVQKPFHLPRKRIHSQITAPPIPNPTHERTSRPIRPPL
TSITPSNHAANLVSDTDFELILGNLDVDAIVQATRKKQTVQTQPLTNSLT
PSEPSTRQSFTAPDPIVSSIHTSSHPILPPSQRASTPTDQHSSHPPQCQS
NLNGAVAPAAAPAKPDLSALDEQTIDDLFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028045HROB