Ggra825.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra825.t2
Unique NameGgra825.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length573
Homology
BLAST of Ggra825.t2 vs. uniprot
Match: A0A2V3IRT2 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT2_9FLOR)

HSP 1 Score: 414 bits (1065), Expect = 1.100e-129
Identity = 236/407 (57.99%), Postives = 285/407 (70.02%), Query Frame = 0
Query:    3 RTINEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDIVRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSNVLIEYQRRASEIRRQRRVEAEKQATLIIEQMRKVAVPQKESLQSMKQENLNSAKGPQQLA-----ASQTPNVNTSVIEISAQRNPQLGLLGHNH-APPAVSSNAFGRQSASFTAAGLSTDAKITCTNCGTANTPRWRTNELMAPRDLCVTCGLFWEKTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGATPNPLQAIIPGLSPNGVSKPPIQKKTPQSVSRRSPSSSGSGRGPRTRIPPGVMLDQNM-TAVPNAN--LLQGFSRSFP-------------------------ARAGNQDRFNIGQQL 375
            RTINEYNGI GLRKFLD+ LIKEVE+TPSQI+D+SMPHGVSLATL+DIV LT ++ M V+ N+AK IE L+K AQ  LS+LRP+TA KI  NPAQQ N L E+QRR   +R+QR  EA+K A LI+EQMRKVA+P K+  +     + N A G  +++     + Q    ++SV ++S Q+N QLGLL  N     A  +NA  R + SF   G S D KITCTNCGT NTPRW+++++ APR LCVTCGLFWEKTRQMRPKDFATQ+SFFQS+QK + TQNGRT +  + + L  +IPG+SPNGVSKPPIQKKT  S SRRSPSSSGSGRG R+RIP  V+LDQ+M  AVPNAN   L G SR+FP                         ARAGNQ  FNIGQQL
Sbjct:  423 RTINEYNGIQGLRKFLDDDLIKEVESTPSQIIDFSMPHGVSLATLHDIVSLTQVDPMAVAPNQAKAIEMLRKQAQTHLSRLRPDTAAKIARNPAQQPNALFEFQRRTIALRKQREHEADKHAALIVEQMRKVALPPKDPPRP----DRNEASGAMKISCPNAVSQQLQTDSSSVHDVSLQQNGQLGLLRQNQPTTTAFPANALVRPAVSFALRGQSIDTKITCTNCGTVNTPRWQSSDITAPRGLCVTCGLFWEKTRQMRPKDFATQTSFFQSMQKAVPTQNGRTILNKSQSQLHTMIPGMSPNGVSKPPIQKKTTPSASRRSPSSSGSGRGSRSRIPSCVLLDQSMHPAVPNANPNFLHGMSRAFPSMQSQSHLTQTQRPSVGGSVLDVITARAGNQRSFNIGQQL 825          
BLAST of Ggra825.t2 vs. uniprot
Match: A0A2V3IRT7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT7_9FLOR)

HSP 1 Score: 176 bits (446), Expect = 3.720e-48
Identity = 97/199 (48.74%), Postives = 132/199 (66.33%), Query Frame = 0
Query:  382 GSQSLGMVPSSSESI----------HRQSLLQQTVPQTQQGFANVGASNFNPLAFRGTNPSSMFNPTNLNNQSPSNVGHHGFIPEGGIGVALQKISAQNNRLMMGQRLNNFSAPNNGAAGADGIAVSGAAGGNGLGNPSFGTFPSQAGNPSMAHIPSVNDMRGSQVGNVPVNETPDQMMENLLFGVGGIASSPSGPPEF 570
            GSQ LG++P++SES            +Q+ L Q +   QQGF NVGAS  NP+ F+G N  +MFN  N+N Q+ +NV H GFI EGG+GV   K+   N+++++GQR+ +    N+   GA+ +  +G   G+GLGN SF  F +Q GN  ++H+ S+ DMR SQ+  +P NETPDQMMENLLFG+GGIASSPSG PEF
Sbjct:   16 GSQPLGIIPNASESFMTAAKQTLPQQQQNPLHQVLRPPQQGFYNVGASASNPITFQGNNQHTMFNSGNINYQN-ANVSHQGFILEGGMGVQFPKVPDPNSQVLLGQRMTDLCTSNSEMPGAESMYENGGTTGDGLGNASFLGFANQQGNAGISHVSSIGDMRRSQLATIPGNETPDQMMENLLFGMGGIASSPSGAPEF 213          
BLAST of Ggra825.t2 vs. uniprot
Match: A0A2V3IH07 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH07_9FLOR)

HSP 1 Score: 114 bits (286), Expect = 3.310e-26
Identity = 70/153 (45.75%), Postives = 88/153 (57.52%), Query Frame = 0
Query:  290 LQAIIPGLSPNGVSKPPIQKKTPQSVSRRSPSSSGSGRGPRTRIPPGVMLDQNMTAVPNANLLQGFSRSFP---------------------------ARAGNQDRFNIGQQLQRP---EIGGSQSLGMVPSSSESIHRQSLLQQTVPQTQQG 412
            +Q+ IPGLSPN +SK PIQKKTP+S SRRSPSS+GSGRGP+T + PGVM +Q+M +VPNANL Q FS SFP                           A AGNQDRFN  QQ QRP      G+++  +     E+ H  S +  +  Q+  G
Sbjct:    1 MQSTIPGLSPNVISKLPIQKKTPESDSRRSPSSNGSGRGPKTWMLPGVMSEQSMCSVPNANLQQRFSCSFPILPIPSNIRQANPQRANIGGSVLHVLTAMAGNQDRFNFTQQFQRPGPPNFVGTKAGAVARQMKEAAHESSSINSSTFQSPTG 153          
BLAST of Ggra825.t2 vs. uniprot
Match: R7Q6X1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6X1_CHOCR)

HSP 1 Score: 113 bits (282), Expect = 2.080e-22
Identity = 114/382 (29.84%), Postives = 176/382 (46.07%), Query Frame = 0
Query:    6 NEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDIVRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSNVLIEYQRRASEIRRQRRVEAEKQATLIIEQMR---------KVAVPQKE-------------------------------SLQSMKQENLNSAKGPQQ-LAASQTPNVNTSVIEISAQR--NPQLGLLGH--NHAPPAVSSNAFGRQSASFTAAGLSTDAKITCTNCGTANTPRWRTNEL--MAPRDLCVTCGLFWEKTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGAT-----PNPLQAIIPGLSPNGVSKPPIQKKTPQSVSRRSPSSSGSGRGPRTRIPP 335
            +E NGI+GLR+ L E + KEV+  P  +VD+SMPHGVS+AT+++I RL +   + ++A + + I++L K       + R   AG +          L E Q R+  I++Q   EA +QA  IIEQ +          VA+ ++E                               S+QS +  NL  A+  Q  +AA++  +++      ++ R  +  +G+  H  +H  P  + N+                    C NCGT +   WR   L       LC+ CGL+WEKT + RPK+   Q+S   S  +  S  +    +GA+      +P+ +  P  +PNGV+K PIQK  P  V + SP  S S  G R  IPP
Sbjct:  434 HEMNGIDGLRQLLGEDIAKEVDTVPVDVVDFSMPHGVSVATMDEIARLQNAPALGIAAKDLQCIDSLHKQVLSDAHRRRASPAGAMDTGSNFTPAQLHEIQLRSLGIKQQLCTEAHRQAN-IIEQRKHMSSAHHPNNVALHKRELQLLSQKRQRSGVTDGRSVMRPAHHNFSSQSSVQSQEMNNLLKARAQQAAVAAAKAASLDAHQNHAASNRGLSHSVGIPSHRTSHELPPANQNSI-------------------CNNCGTRDQFGWRAGGLGPEGVERLCIPCGLYWEKTHRNRPKELWGQTSHRTS--RTPSNGSFVNSVGASCGLVNASPMSS--PHATPNGVAKRPIQK--PVRVMQSSPRHSSSSVGSRG-IPP 788          
The following BLAST results are available for this feature:
BLAST of Ggra825.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IRT21.100e-12957.99Bromodomain and PHD finger-containing protein 3 n=... [more]
A0A2V3IRT73.720e-4848.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IH073.310e-2645.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q6X12.080e-2229.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 213..265
e-value: 9.9E-6
score: 33.1
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 219..255
e-value: 2.8E-8
score: 33.2
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 213..257
score: 11.397912
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 218..257
e-value: 1.03776E-10
score: 55.0714
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 212..272
e-value: 3.4E-11
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..328
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..288
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 213..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:222310..224220 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra825.t2Ggra825.t2Gracilaria gracilis GNS1m malemRNAtig00000906_pilon 222310..224220 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra825.t2 ID=Ggra825.t2|Name=Ggra825.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=573bp
MQRTINEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDI
VRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSN
VLIEYQRRASEIRRQRRVEAEKQATLIIEQMRKVAVPQKESLQSMKQENL
NSAKGPQQLAASQTPNVNTSVIEISAQRNPQLGLLGHNHAPPAVSSNAFG
RQSASFTAAGLSTDAKITCTNCGTANTPRWRTNELMAPRDLCVTCGLFWE
KTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGATPNPLQAIIPGLSPN
GVSKPPIQKKTPQSVSRRSPSSSGSGRGPRTRIPPGVMLDQNMTAVPNAN
LLQGFSRSFPARAGNQDRFNIGQQLQRPEIGGSQSLGMVPSSSESIHRQS
LLQQTVPQTQQGFANVGASNFNPLAFRGTNPSSMFNPTNLNNQSPSNVGH
HGFIPEGGIGVALQKISAQNNRLMMGQRLNNFSAPNNGAAGADGIAVSGA
AGGNGLGNPSFGTFPSQAGNPSMAHIPSVNDMRGSQVGNVPVNETPDQMM
ENLLFGVGGIASSPSGPPEFDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA