Ggra8249.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8249.t1
Unique NameGgra8249.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
BLAST of Ggra8249.t1 vs. uniprot
Match: A0A2V3JAU7 (Nuclear speckle splicing regulatory protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JAU7_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 3.490e-60
Identity = 104/154 (67.53%), Postives = 130/154 (84.42%), Query Frame = 0
Query:    1 MFDNDSSSSSSAERTKTPFNAIKEAANAVSRRKLPTNPDLEKEIEHIFSQPVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREENEQPSAQNVSGFYTRLLQTRINSEK 154
            MFD+DSSSSSS E  K PFNA+KEAANA  RRKLP NPDLEKEIEHIFSQPV + D+ K+ RKSRY+GKLVESA+RRKA+AQRV+E+RI+KERE+E+ ++   ERFVTPAYK++LEEN+R+ Q+E++EE EQPS +NVS FY +LLQ+ +   K
Sbjct:    1 MFDSDSSSSSSTENAKKPFNAVKEAANATQRRKLPVNPDLEKEIEHIFSQPVAKRDTTKRERKSRYIGKLVESAERRKAEAQRVIEQRIVKEREREDALFQGKERFVTPAYKRKLEENERLRQVEIQEEEEQPSGRNVSEFYHKLLQSSVLKSK 154          
BLAST of Ggra8249.t1 vs. uniprot
Match: K8EPU3 (DUF2040 domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPU3_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 8.500e-10
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 0
Query:   52 VQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREENEQPSAQ-----NVSGFYTRLLQTRI 150
            ++ +D  K  RKSRY+ +L E+A  RK +     ERR++KEREKE+E+YG  E+F+T AY+K+LEE+++  + EL  E  +   +     +++ FY  L+   +
Sbjct:  111 LREKDGEKIERKSRYIAQLKEAADFRKREQDVTYERRLMKEREKEDELYGDKEKFITSAYRKKLEEDEKWKKEELEREQREKEREVQGKSDMTSFYANLMNRNV 214          
BLAST of Ggra8249.t1 vs. uniprot
Match: C1N541 (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N541_MICPC)

HSP 1 Score: 64.3 bits (155), Expect = 2.430e-9
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   50 QPVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQME----LREENEQPSAQ-NVSGFYTRLLQTRINS 152
            Q + R D  +  RKSRY+  L+E  K R+ +   V ERR++KER+KE+ +YG  E+FVT AYKK+LEE+ +    E     RE  +  S + ++SGFY  L+ +R+ S
Sbjct:  103 QKIARADEERTERKSRYIQSLIEKQKEREREDAIVYERRLLKERQKEDHLYGDKEKFVTAAYKKKLEEDAKWLAQEKIDDAREAADDVSKKTDLSGFYFNLM-SRVRS 209          
BLAST of Ggra8249.t1 vs. uniprot
Match: U5D405 (DUF2040 domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=U5D405_AMBTC)

HSP 1 Score: 63.9 bits (154), Expect = 6.980e-9
Identity = 42/108 (38.89%), Postives = 69/108 (63.89%), Query Frame = 0
Query:   48 FSQPVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQ----MELREENEQPSAQN-VSGFYTRLLQTRI 150
             + P+Q++   +Q R+S+Y+GKL+E AK+R+ + + + ER++ KER KE+ +Y   E+FVT AYKK+L E  +  +     ELREE E  + ++ +S FY  LL   +
Sbjct:   83 IANPIQQD---RQKRESKYIGKLIEKAKKREQEHEIIYERKLAKERGKEDHLYEDKEKFVTNAYKKKLAEQAKWLEEERLRELREEKEDVTKKSDMSDFYANLLTKNV 187          
BLAST of Ggra8249.t1 vs. uniprot
Match: A0A2K1JYN0 (DUF2040 domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JYN0_PHYPA)

HSP 1 Score: 62.8 bits (151), Expect = 2.000e-8
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 0
Query:   35 PTNPDLEKEIEHIFSQPVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREENEQPSAQ-----NVSGFYTRLLQTRI 150
            PT  D +   E +    V+     +  R+ +Y+GKL++ AK R  +   V ER++ KEREKE+ +YG  E+FVT AYK++L+E  +  + E R E E+   +     ++S FY  LL++ +
Sbjct:   71 PTAFDYDGVYEEMKGNQVRSIHEDRAKREPKYIGKLLQKAKERSREQDIVYERQLAKEREKEDHLYGDKEKFVTGAYKRKLQEQAKWLEEERRRELEEQKHEVTNKSDMSDFYRNLLKSNV 191          
BLAST of Ggra8249.t1 vs. uniprot
Match: A0A7S4E5L4 (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5L4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.600e-8
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 0
Query:   64 SRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELR--EENEQPSAQN--VSGFYTRLLQTRI 150
            +RY+G L ++AK R+ +  RV ER+++KE+E++++ YG TERFVT AYKK+L+E+ +    + R  E  E+ SAQ   ++GFY+ LL   I
Sbjct:  115 ARYIGSLKQAAKVREREFDRVYERQLLKEQEQDKDTYGDTERFVTAAYKKQLQESRKWDAEDRRMDEVEERTSAQTSGMAGFYSNLLTRNI 205          
BLAST of Ggra8249.t1 vs. uniprot
Match: nuclear speckle splicing regulatory protein 1-like n=3 Tax=Rhagoletis TaxID=28609 RepID=UPI00177E7041 (nuclear speckle splicing regulatory protein 1-like n=3 Tax=Rhagoletis TaxID=28609 RepID=UPI00177E7041)

HSP 1 Score: 61.6 bits (148), Expect = 5.510e-8
Identity = 38/107 (35.51%), Postives = 66/107 (61.68%), Query Frame = 0
Query:   53 QREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREE-----NEQPSAQNVSGFYTRLLQTRINSEK 154
            ++E   K+P+K +Y+G+L+E A+RRK D +  +ER++ KERE+E E +   E FVT  Y+K+LEE  ++ + E R+E      +    +++ GFY  L + +  + K
Sbjct:   94 EKEIKSKEPKKPKYIGRLMEFAERRKLDNELRVERQVQKEREQEGEEFKDKESFVTATYRKKLEEMRKLQEQEQRDEYLEAIGDVTKQKDLDGFYRHLFEQKTGTTK 200          
BLAST of Ggra8249.t1 vs. uniprot
Match: A0A0K8V1E3 (Nuclear speckle splicing regulatory protein 1 (Fragment) n=6 Tax=Bactrocera TaxID=47832 RepID=A0A0K8V1E3_BACLA)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-8
Identity = 43/121 (35.54%), Postives = 73/121 (60.33%), Query Frame = 0
Query:   39 DLEKEIEHIFSQPVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREE-----NEQPSAQNVSGFYTRLLQTRINSEK 154
            +L  EIE+   Q  ++E   K+P+K +Y+G+L+E A+RRK + +  +ER++ KERE+E E +   E FVT  Y+K+LEE  ++ + E R+E      +    +++ GFY  L + +  S K
Sbjct:  120 ELYDEIENKREQ--EQEIKSKEPKKPKYIGRLMEFAERRKLENELRVERQVQKEREQEGEEFKGKESFVTSTYRKKLEEMRKLQEQEKRDEYLEAIGDVTKQKDLDGFYRHLFEQKTGSAK 238          
BLAST of Ggra8249.t1 vs. uniprot
Match: B4MA17 (DUF2040 domain-containing protein n=2 Tax=virilis group TaxID=32335 RepID=B4MA17_DROVI)

HSP 1 Score: 61.2 bits (147), Expect = 7.640e-8
Identity = 38/119 (31.93%), Postives = 72/119 (60.50%), Query Frame = 0
Query:   54 REDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREE-----NEQPSAQNVSGFYTRLLQTRINSEKGKSLCSSWPKTSE 167
            +E  R +PRK++Y+G+L+E A+RRK + +  +ER++ K+RE E EMY   + +VT AY+K+LE   ++ + + R+E      +     ++ GFY  L + ++ +++      + P TS+
Sbjct:   99 KEIKRLEPRKAKYIGRLMEHAERRKLENELRVERQVQKDREAEGEMYKDKDTYVTAAYRKKLESIRQLQEQDKRDEYLEAIGDVTKQNDLDGFYRHLYEQKLGTQQPVPKPKTAPSTSD 217          
BLAST of Ggra8249.t1 vs. uniprot
Match: A0A2V0PHC8 (DUF2040 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHC8_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 2.500e-7
Identity = 36/96 (37.50%), Postives = 62/96 (64.58%), Query Frame = 0
Query:   61 PRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMYGHTERFVTPAYKKRLEENDRVTQMELREENEQPSAQN------VSGFYTRLLQTRI 150
            P++ RY+  ++E+A+ RK +   ++ERR++KER+KE+ +Y + ERFVT AY+K+LEE D+  Q E+R+ +E   A +      +  FY  L+   +
Sbjct:  108 PKQPRYITSILETAQIRKREQDLIMERRLLKERQKEDHLYQNEERFVTAAYRKKLEE-DKQWQEEMRKRDEAEEAADPAKVGHMGQFYANLMTKNV 202          
The following BLAST results are available for this feature:
BLAST of Ggra8249.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JAU73.490e-6067.53Nuclear speckle splicing regulatory protein 1 n=1 ... [more]
K8EPU38.500e-1037.50DUF2040 domain-containing protein n=1 Tax=Bathycoc... [more]
C1N5412.430e-941.67Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
U5D4056.980e-938.89DUF2040 domain-containing protein n=3 Tax=Amborell... [more]
A0A2K1JYN02.000e-834.71DUF2040 domain-containing protein n=1 Tax=Physcomi... [more]
A0A7S4E5L42.600e-843.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
nuclear speckle splicing regulatory protein 1-like n=3 Tax=Rhagoletis TaxID=28609 RepID=UPI00177E70415.510e-835.51nuclear speckle splicing regulatory protein 1-like... [more]
A0A0K8V1E35.770e-835.54Nuclear speckle splicing regulatory protein 1 (Fra... [more]
B4MA177.640e-831.93DUF2040 domain-containing protein n=2 Tax=virilis ... [more]
A0A2V0PHC82.500e-737.50DUF2040 domain-containing protein n=1 Tax=Raphidoc... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availablePANTHERPTHR47845NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1 HOMOLOGcoord: 56..149
IPR018612Nuclear speckle splicing regulatory protein 1, N-terminalPFAMPF09745DUF2040coord: 53..134
e-value: 2.1E-19
score: 69.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:248599..249585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8249.t1Ggra8249.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 248599..249585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8249.t1 ID=Ggra8249.t1|Name=Ggra8249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MFDNDSSSSSSAERTKTPFNAIKEAANAVSRRKLPTNPDLEKEIEHIFSQ
PVQREDSRKQPRKSRYVGKLVESAKRRKADAQRVLERRIIKEREKEEEMY
GHTERFVTPAYKKRLEENDRVTQMELREENEQPSAQNVSGFYTRLLQTRI
NSEKGKSLCSSWPKTSEGVSQNYVPYS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018612NSRP1_N