Ggra8248.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8248.t1
Unique NameGgra8248.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Homology
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A2V3J5N2 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5N2_9FLOR)

HSP 1 Score: 394 bits (1013), Expect = 1.100e-136
Identity = 218/267 (81.65%), Postives = 229/267 (85.77%), Query Frame = 0
Query:    1 MPIAFALPVYGSSSFNGHRL-RTCCEKASRSFAKPPHMSVRMVPEPSXXXXXXXXXXXXXXXXXXXXX--MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPSLV 264
            M  AFA P++ +SSF+G RL  T     S    KP  MS RMVPEPS         XXXXXX        MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDP+KDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYM+DFTGQPL+KIE DTDRDFFMTA+DA EYGI+DEVIKTKV+VPVLKRP+LV
Sbjct:    1 MSTAFAFPIH-ASSFHGTRLPATSRAPTSTPLFKPARMSARMVPEPSPQPPQPADPXXXXXXSTVPPPVPMVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPEKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMSDFTGQPLDKIETDTDRDFFMTAIDAMEYGIIDEVIKTKVDVPVLKRPTLV 266          
BLAST of Ggra8248.t1 vs. uniprot
Match: R7QUP2 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUP2_CHOCR)

HSP 1 Score: 359 bits (921), Expect = 9.710e-124
Identity = 179/197 (90.86%), Postives = 190/197 (96.45%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPSLV 264
            MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQ+LFLASEDPDKDIT+YINSPGG VSAG+AIYDTMQFIPCDVQTICFGTAASMGAFLL AGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQA+EILFVK LLNGYMADFTGQ L+KI+ DTDRDFFMTA DAQEYG++DEVIKTK++VPVL RP+LV
Sbjct:    1 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQLLFLASEDPDKDITMYINSPGGGVSAGMAIYDTMQFIPCDVQTICFGTAASMGAFLLSAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAREILFVKDLLNGYMADFTGQSLQKIQNDTDRDFFMTAADAQEYGLIDEVIKTKIDVPVLARPTLV 197          
BLAST of Ggra8248.t1 vs. uniprot
Match: ATP-dependent Clp protease proteolytic subunit 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D26D8 (ATP-dependent Clp protease proteolytic subunit 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D26D8)

HSP 1 Score: 340 bits (872), Expect = 2.710e-116
Identity = 172/195 (88.21%), Postives = 183/195 (93.85%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPS 262
            MVA+GD SQMDIYSRLAKDRILLLGR VDDEVANSLVAQML+L SEDPDK ITIYINSPGGSV+AG+AIYDTMQF+ CD+QTICFGTAASMGAFLL AGTKG RKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMA+FTGQPLEKIE DTDRDFFMTA +A+EYG++DEVIKT VEVPVL RP 
Sbjct:    1 MVAMGD-SQMDIYSRLAKDRILLLGRQVDDEVANSLVAQMLYLNSEDPDKPITIYINSPGGSVAAGMAIYDTMQFLSCDIQTICFGTAASMGAFLLAAGTKGMRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMAEFTGQPLEKIENDTDRDFFMTAAEAKEYGLIDEVIKTSVEVPVLSRPE 194          
BLAST of Ggra8248.t1 vs. uniprot
Match: M2VV76 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VV76_GALSU)

HSP 1 Score: 320 bits (820), Expect = 6.270e-107
Identity = 160/195 (82.05%), Postives = 180/195 (92.31%), Query Frame = 0
Query:   69 VAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPSL 263
            V +GD +QMDIYSRLAKDRILLLGRAVDDEVAN+LVAQMLFLA+EDP KDIT+YINSPGGSVSAGLA+YDTMQFIPCDV T+CFGTAASM AFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQA+EILF+K+LLN YMAD+TG+PLEKIE DTDRDFFMT  +A EYG++DEVI+TK  +   ++P+L
Sbjct:   99 VYMGD-TQMDIYSRLAKDRILLLGRAVDDEVANALVAQMLFLANEDPSKDITLYINSPGGSVSAGLAVYDTMQFIPCDVSTVCFGTAASMAAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAREILFIKSLLNTYMADYTGKPLEKIEQDTDRDFFMTPEEALEYGMIDEVIQTKKVLAKPQKPAL 292          
BLAST of Ggra8248.t1 vs. uniprot
Match: R7QLF4 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF4_CHOCR)

HSP 1 Score: 315 bits (808), Expect = 1.850e-105
Identity = 159/196 (81.12%), Postives = 177/196 (90.31%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPSL 263
            MV  GDN QMD+YSRLAKDRILLLGR VDDEVAN+LVAQMLFL+++DP KDIT+YINSPGGSVSAGLAI+DTMQ+IPCDV TICFGTAASMGAFLLG+GTKGKRKSLPN+RIMIHQPLGGAQGQAADIEIQAKEILF+++LLNGYMA  TGQ L KIE+DTDRDFFMT  +A EYGI+DEVI+TK  +P   RP L
Sbjct:   74 MVTFGDN-QMDVYSRLAKDRILLLGRQVDDEVANALVAQMLFLSADDPTKDITLYINSPGGSVSAGLAIFDTMQYIPCDVATICFGTAASMGAFLLGSGTKGKRKSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFIRSLLNGYMAYATGQDLNKIEVDTDRDFFMTPEEALEYGIIDEVIQTKRSLPKPARPML 268          
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A1X6P0G7 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0G7_PORUM)

HSP 1 Score: 314 bits (804), Expect = 7.230e-105
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVP 256
            MVAVGD  QMDIYSRLAKDRIL+LG AVDD VAN LVAQMLFLASEDPDKDIT++INSPGGS+SAGLAI+DTMQF+PCD+QTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQA EILF++ LLN YMA +TG  +EKIE DTDRD+FMT  DA EYG++D+VIKTKV +P
Sbjct:   73 MVAVGDG-QMDIYSRLAKDRILVLGAAVDDTVANQLVAQMLFLASEDPDKDITLWINSPGGSISAGLAIFDTMQFVPCDIQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAGEILFMRGLLNSYMAGYTGVAVEKIEKDTDRDYFMTPEDAVEYGLIDDVIKTKVMLP 260          
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A5J4YL26 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL26_PORPP)

HSP 1 Score: 309 bits (792), Expect = 4.800e-103
Identity = 154/194 (79.38%), Postives = 177/194 (91.24%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRP 261
            MVA+G+  QMD++SRLAKDRILLLGR VDDEVAN+LVAQML+LA++DP KDIT+YINSPGGSVSAGLAIYDTMQ+IPCDVQTICFGTAASMGAFLLGAG KGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEIL++K +LN YM+++TG+ L++IE DTDRDFFMT  +A+EYGI+DEVI+TKV    L  P
Sbjct:   71 MVAMGEG-QMDVFSRLAKDRILLLGRQVDDEVANALVAQMLYLAADDPSKDITLYINSPGGSVSAGLAIYDTMQYIPCDVQTICFGTAASMGAFLLGAGAKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILWIKEVLNMYMSEYTGKELQQIEKDTDRDFFMTPAEAKEYGIIDEVIETKVSGKFLMPP 263          
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A7S0DXN8 (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0DXN8_9CRYP)

HSP 1 Score: 309 bits (791), Expect = 8.940e-103
Identity = 160/198 (80.81%), Postives = 176/198 (88.89%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVE-VPVLKRPSLV 264
            MV+VG+  QMDIYSRLAKDRILLLG  V+DEVAN+LVAQMLFLA+EDP KDITIYINSPGGSVSAG+AIYDTMQ+IPCD  T+CFGTAASMGAFLL +G  GKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVK+LLN YMAD TGQPL+KIE DTDRDFFMT  +A+EYGI+DEVI+TK   +P   RP LV
Sbjct:   80 MVSVGEG-QMDIYSRLAKDRILLLGTDVNDEVANNLVAQMLFLANEDPGKDITIYINSPGGSVSAGMAIYDTMQYIPCDASTVCFGTAASMGAFLLCSGAPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKSLLNSYMADATGQPLDKIEEDTDRDFFMTPEEAKEYGIIDEVIQTKKSNLPKPSRPILV 276          
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A7S0BSP9 (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSP9_9RHOD)

HSP 1 Score: 303 bits (777), Expect = 7.720e-102
Identity = 149/196 (76.02%), Postives = 177/196 (90.31%), Query Frame = 0
Query:   68 MVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVEVPVLKRPSL 263
            MVAVGD  QMDIYSRLAKDRIL+LGR+VDDEVANSLVAQML+L+SE  ++DIT+YINSPGGSVSAG+AI+D MQFIPCD+QTIC+G AASMGAFLLGAGTKGKRK+LPNARIMIHQP+GGAQGQAADI IQA+EILFVK +LN YMA +TGQ ++KI  DTDRD+F+T V+A+ YGI+DEVI+T+V+VP + +  L
Sbjct:    1 MVAVGDG-QMDIYSRLAKDRILVLGRSVDDEVANSLVAQMLYLSSEHAERDITLYINSPGGSVSAGMAIFDAMQFIPCDIQTICYGVAASMGAFLLGAGTKGKRKALPNARIMIHQPMGGAQGQAADIAIQAREILFVKNMLNSYMASYTGQSIDKIVRDTDRDYFLTPVEAKAYGIIDEVIQTRVKVPRISKIEL 195          
BLAST of Ggra8248.t1 vs. uniprot
Match: A0A1Z5K0G9 (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G9_FISSO)

HSP 1 Score: 306 bits (783), Expect = 8.520e-102
Identity = 154/193 (79.79%), Postives = 171/193 (88.60%), Query Frame = 0
Query:   72 GDNSQMDIYSRLAKDRILLLGRAVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIKTKVE-VPVLKRPSL 263
            G N Q+D+ SRL KDRILLLG  V+DEVAN LVAQ+L+LA+EDP+KDIT+YINSPGGSVSAGLAIYDTM+FIPCDVQT+CFG AASMGAFLLGAGT GKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILF KALLN Y+AD+T QP+EKIE DTDRDFFMT  +A +YGI+DEVIKTK   +PV   PSL
Sbjct:   66 GKNGQLDVVSRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPNKDITLYINSPGGSVSAGLAIYDTMKFIPCDVQTVCFGMAASMGAFLLGAGTPGKRKSLPNARIMIHQPLGGAQGQAADIEIQAKEILFTKALLNKYIADYTDQPVEKIEEDTDRDFFMTPYEALDYGIIDEVIKTKTSHIPVPAMPSL 258          
The following BLAST results are available for this feature:
BLAST of Ggra8248.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5N21.100e-13681.65ATP-dependent Clp protease proteolytic subunit n=1... [more]
R7QUP29.710e-12490.86ATP-dependent Clp protease proteolytic subunit n=1... [more]
ATP-dependent Clp protease proteolytic subunit 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D26D82.710e-11688.21ATP-dependent Clp protease proteolytic subunit 2-l... [more]
M2VV766.270e-10782.05ATP-dependent Clp protease proteolytic subunit n=1... [more]
R7QLF41.850e-10581.12ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A1X6P0G77.230e-10583.07ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A5J4YL264.800e-10379.38ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0DXN88.940e-10380.81ATP-dependent Clp protease proteolytic subunit n=3... [more]
A0A7S0BSP97.720e-10276.02ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A1Z5K0G98.520e-10279.79ATP-dependent Clp protease proteolytic subunit n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001907ATP-dependent Clp protease proteolytic subunitPRINTSPR00127CLPPROTEASEPcoord: 149..166
score: 66.39
coord: 118..138
score: 66.55
coord: 78..93
score: 50.78
coord: 227..246
score: 56.12
coord: 170..189
score: 63.5
IPR001907ATP-dependent Clp protease proteolytic subunitHAMAPMF_00444ClpPcoord: 58..252
score: 41.054279
IPR001907ATP-dependent Clp protease proteolytic subunitCDDcd07017S14_ClpP_2coord: 78..248
e-value: 2.01341E-109
score: 311.298
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 74..251
e-value: 1.7E-79
score: 266.0
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 72..257
NoneNo IPR availableGENE3D3.90.226.10coord: 62..255
e-value: 5.8E-77
score: 259.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..65
NoneNo IPR availablePANTHERPTHR10381:SF24ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 4, CHLOROPLASTICcoord: 72..257
IPR018215ClpP, Ser active sitePROSITEPS00381CLP_PROTEASE_SERcoord: 149..160
IPR033135ClpP, histidine active sitePROSITEPS00382CLP_PROTEASE_HIScoord: 171..184
IPR029045ClpP/crotonase-like domain superfamilySUPERFAMILY52096ClpP/crotonasecoord: 76..251

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:247222..248016 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8248.t1Ggra8248.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 247222..248016 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8248.t1 ID=Ggra8248.t1|Name=Ggra8248.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MPIAFALPVYGSSSFNGHRLRTCCEKASRSFAKPPHMSVRMVPEPSPQPP
ADPPKPDAPPSVPPPVPMVAVGDNSQMDIYSRLAKDRILLLGRAVDDEVA
NSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTMQFIPCDVQTI
CFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQGQAADIEIQAK
EILFVKALLNGYMADFTGQPLEKIEMDTDRDFFMTAVDAQEYGIVDEVIK
TKVEVPVLKRPSLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001907ClpP
IPR023562ClpP/TepA
IPR018215ClpP_Ser_AS
IPR033135ClpP_His_AS
IPR029045ClpP/crotonase-like_dom_sf