Ggra8236.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8236.t1
Unique NameGgra8236.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1120
Homology
BLAST of Ggra8236.t1 vs. uniprot
Match: A0A2V3II75 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II75_9FLOR)

HSP 1 Score: 81.6 bits (200), Expect = 3.890e-12
Identity = 89/321 (27.73%), Postives = 130/321 (40.50%), Query Frame = 0
Query:  782 VWNVFHQRNMLDEVIHFMSNYGCDNYIPLLLDVILKQLEPTLSDDEILRFLRKCDWVWEAPAFSVLSELGKDWGPRAWRLLACARTGYYGEGKEYQMFWNYTDLAGAIRARAADVASKGSDSDSESSHSSTPDDGFTA-EWNQKVV------DDEFEFTMSLNISDVGEPWEDLSPLYLKIRLLEKDGTVISSENAKRKVTARVNLIASGCGCVLGGEAPKVGNTASSSEGTLIRSVIEGFRVMNGSPSGAGGYSYSVMNGQVLKSWLEKHTRHCG--LAFHVRLY--------VAPCSEDGSVTSSESSEEAVECTCGYC 1085
            VW VFH ++ML E+I ++   G  +Y  L+LDV+L+QLEP LSD E++  LR+  W     A  + S     W  RAW+ L  AR                TD        +A   +              P+ G  A  W  + V      D   +F +S+   D  +    L PL   +R++  D   IS    K +V  R  + A  CGC + G++     T   +          G   + GS    GG S+ V++G  LK W++ HT  C   L  HV +         V   + D  V S       ++C CG C
Sbjct:  259 VWTVFHAQDMLVELITYLFRMGAFDYGILVLDVLLRQLEPALSDQELITLLRRVPWQ-NGYAELLASREALQWSSRAWQKLFHARQTL-----------TTTDRISLPLIMSAFKRA-------------LPEPGLRAVRWESERVTYDATPDTNLQFALSV-ACDTRKS-RRLPPLQATVRVVAGDARPIS----KMRVHVRAYVTAQ-CGCDIRGKSGAFAGTELDT----------GDDHVMGSFVRVGGVSFKVLDGSALKEWIDCHTDTCTMRLVVHVSMERERERENGVEYAATDEPVKSPWLQTWQLKCPCGEC 537          
BLAST of Ggra8236.t1 vs. uniprot
Match: A0A2V3IHF1 (BTB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHF1_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 5.470e-12
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 0
Query:   70 IHRVLLDAAGAPLRSLVSGPFKEASSNTITVHERFDSFEVVRKFLHCEPINMDDVPPELPLVADRWGLTTLFRACFTHAEERSRPHSDTPRLHVAELLTRFLPIMAIVDVPARFKTYMARRMALE 194
            IHR LL + G  LR+LV+  FKE SS T+T+H+ FD ++++R +L+ +P++M DV  E  +VA R+ L  LF ACF   E               +L+  +L ++++V  P  F  Y A + +L 
Sbjct:   71 IHRSLLVSTGGALRTLVTSGFKECSSKTVTLHDSFDVWKLIRTYLYRQPVDMRDVTTETVMVAHRYELVELFCACFLWIEVSGIWKGK-------DLVEDWLEVVSLVQPPRAFCEYFALQFSLS 188          
The following BLAST results are available for this feature:
BLAST of Ggra8236.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II753.890e-1227.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IHF15.470e-1236.00BTB domain-containing protein n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 37..170
e-value: 3.2E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 479..519
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 642..656
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 594..625
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..383
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 526..544
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 706..736
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 422..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..417
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1098..1119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..770
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..478

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:209720..213079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8236.t1Ggra8236.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 209720..213079 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8236.t1 ID=Ggra8236.t1|Name=Ggra8236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1120bp
MEPKPKPIRVGAWELQHHVLKPTRCLLQTHAVRLHAALQRPHDFVTFVCS
SHPPTPHPPPDTDAAGRVTIHRVLLDAAGAPLRSLVSGPFKEASSNTITV
HERFDSFEVVRKFLHCEPINMDDVPPELPLVADRWGLTTLFRACFTHAEE
RSRPHSDTPRLHVAELLTRFLPIMAIVDVPARFKTYMARRMALEMRYLNA
YFRENPVHIPPLCRDAVCSLRHTDGVHCRRKKSAVLSDESIPATHVANPT
AEPVPDTLDSDDPKLTTDPSPETTDPKSPHANHDPVNNSEQQHGEEEQKP
DSTVVVDASVQSTATSDNSPQNDLLELEHQGKKQPPSKNPTAEDCQPQND
AQTAAPDEQVTSPAAQNGHLVEGDTTETPAKVSNKPNAKVDDAKSQEGHS
QQLAAVLASSPVALNENTSDGPGMEDGHKNELVGEPESPPERDLTSSPST
DVKGTDQSTADTVVSNAPGQTTVPDKTDENETQATEQTTREDVELTSKRT
EPTPSKADDLKPKEPIEDQTDEEQGNETSTTKPTEASSAHDAQDGDITGN
DAPAAEPSATRDASESNQGATIPASQEPNSTETGETSSPEAPVEGVEEES
KPTRGQDDAESEGGKPSDEQPDEGHTSPCGDANADDNAEGNTEQPEEQHG
DVEENSTAPDAEEGADASANVDADANGNAADATETAADTDNDESPNAENE
AGANADAGSNAGSNAGSHAGSHAGSHAGSNAGSNADDHSNADDESDVADS
DSLGGTEEPELQVYEVDPSESEPKEWHKTFDVWNVFHQRNMLDEVIHFMS
NYGCDNYIPLLLDVILKQLEPTLSDDEILRFLRKCDWVWEAPAFSVLSEL
GKDWGPRAWRLLACARTGYYGEGKEYQMFWNYTDLAGAIRARAADVASKG
SDSDSESSHSSTPDDGFTAEWNQKVVDDEFEFTMSLNISDVGEPWEDLSP
LYLKIRLLEKDGTVISSENAKRKVTARVNLIASGCGCVLGGEAPKVGNTA
SSSEGTLIRSVIEGFRVMNGSPSGAGGYSYSVMNGQVLKSWLEKHTRHCG
LAFHVRLYVAPCSEDGSVTSSESSEEAVECTCGYCECSGCDRESEAEKES
VYSGNNNGNEDGSDNENDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf