Ggra8235.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8235.t1
Unique NameGgra8235.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Homology
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A2V3J5S9 (Syntaxin-61 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5S9_9FLOR)

HSP 1 Score: 303 bits (775), Expect = 3.060e-102
Identity = 156/210 (74.29%), Postives = 184/210 (87.62%), Query Frame = 0
Query:    1 MTREDPFPIVQEEVRAAWTSLSKDISHISEAQYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPSTSTSRADQIRQANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITFVVLTILVVTT 210
            MT+EDPFPIVQEEVR+AW +LSKD SHISE Q+QSRL+ALECDV+DLSDA+ VAR+DR+RF LS+H+IASRQ+FVTDMQRN+ ALR+++ +V + S SR D++R+AND+FIG E+RQQEMLMEHQD QLGELANAVERIGIMGRDMHQELE QGQMLDDLGGEM    SR+K V +KLN FI ETGPR FCTI+ L ITF++LT LVVTT
Sbjct:    1 MTQEDPFPIVQEEVRSAWAALSKDFSHISETQFQSRLEALECDVQDLSDAIDVARKDRERFGLSQHEIASRQNFVTDMQRNLAALRRKS-VVGAPSQSRVDEVRRANDAFIGDEMRQQEMLMEHQDAQLGELANAVERIGIMGRDMHQELEVQGQMLDDLGGEMDTTFSRVKVVRKKLNDFIEETGPRTFCTILILSITFIILTFLVVTT 209          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A5J4YZT5 (Syntaxin-61 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZT5_PORPP)

HSP 1 Score: 102 bits (255), Expect = 4.480e-23
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 0
Query:  107 NDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITFVVLTILVVTT 210
            ND F+ +E  QQ+++M+ QDV+LGEL  +V+RIG MG++MH EL  QG++LDD+  EM    SR +AV +KLNK I ET     CTI+ L +  VVLT+LV+ T
Sbjct:  166 NDDFVRNEALQQDLIMQEQDVELGELGKSVKRIGNMGKEMHLELSRQGEILDDIDTEMDSTLSRFRAVQQKLNKMIEETSKGQMCTIILLTVALVVLTMLVILT 269          
BLAST of Ggra8235.t1 vs. uniprot
Match: M2WY41 (Syntaxin 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WY41_GALSU)

HSP 1 Score: 102 bits (253), Expect = 7.350e-23
Identity = 63/205 (30.73%), Postives = 109/205 (53.17%), Query Frame = 0
Query:   32 QYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNV----------------------------LALRKRAEIVPSTSTSRADQIRQANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITFVVLTILVV 208
            Q Q+ L+++  D+++L   V V  ++  +F LSE +I SR+ FV+D  + +                            L ++K         +  A  + + ND +I  E  +QE L+E QD  L ELA+AV RIG MG+++H+EL E  +ML+++GG     + R++ +  ++++ + ETG   FC I+GL   F++LT+LV+
Sbjct:   54 QLQNSLRSVYLDLQELQKTVHVVERNPVKFHLSELEIDSRKRFVSDTMKELETIKSTLQSPRTLQKLEEDRKXXXXXXXLLVKKNLVYEDERKSRAARNMERLNDQYIQDEALRQENLIEQQDSSLDELASAVIRIGNMGKEIHEELNEHNRMLEEVGGRFDSTQGRLQLLQGRISRLVRETGRGQFCLIIGLFFLFIILTMLVI 258          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A2V0NKE4 (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKE4_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 5.500e-22
Identity = 65/218 (29.82%), Postives = 119/218 (54.59%), Query Frame = 0
Query:    3 REDPFPIVQEEVRAAWTSLSKDISHIS------------EAQYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPSTSTSRAD-QIRQANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRN-FCTIVGLCITFVVLTIL 206
            R+DPF IV++E++     L + +S                A  +    +L+  +K+L  A+  A +   RF LS+ +IASR+ ++   +R    +    +   +   + A+ + ++AN++F+G E  +Q+++M  QDV+L ++  AV R+G +G  +H+ELE QG+MLD+LG ++    SR++A  +K+   I ++G       IV L +  VVL +L
Sbjct:    5 RQDPFYIVRQEIQDTVHELQQKMSRFHGLTAANPERKQLAANVRDGCDSLQWQLKELEAALDRAAEQPARFNLSQDEIASRRKWIAATRRQAEGMTNTLKTATAPPVNAAEAKAQKANEAFLGDEQAKQQLIMRQQDVELEDIEQAVTRLGRVGLTIHEELESQGRMLDELGEDVDTTHSRLRATQKKIMDVIRKSGTNTQLGVIVFLVVVLVVLVVL 222          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A061S1G2 (Syntaxin of plants SYP6 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1G2_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.740e-16
Identity = 58/221 (26.24%), Postives = 111/221 (50.23%), Query Frame = 0
Query:    4 EDPFPIVQEEVRAAWTSLSKDISHISEA------------QYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALR----KRAEIVPSTSTSR----ADQIRQANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRN-FCTIVGLCITFVVL 203
            +DP+ +V+EE+  + +SL +    ++              + Q    ++   V+ L  AV +++++  +F L E +I++R+ +  D Q  V  +R    K A    S +T      A   ++ ND+ I      Q  ++  QD +L EL + +  IG +G  +H+ELE+Q ++L++L  +M    +R++A  +K+N+ +   G R   C IV L +  +VL
Sbjct:   33 QDPYYLVKEEITDSLSSLERHYDRLASIPPGSTEFLRLKNEVQQACDSVSWQVEQLCRAVDISKRNPAKFNLDEQEISARERWSQDAQLKVEEIRAGIPKLARSAASATTQADVPPASSAQRQNDAIIAGHAETQAQIIREQDQELDELGHHINNIGNIGLTIHEELEDQNRLLEELDEDMDRTTTRLEAAQKKINQVLKRAGARGQMCIIVVLTVVLIVL 253          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A3Q3M8C0 (Syntaxin 10 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3M8C0_9LABR)

HSP 1 Score: 79.0 bits (193), Expect = 1.990e-14
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 0
Query:   12 EEVRAAWTSLSKDISHISEAQYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPSTSTSRADQIR----QANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRN-FCTIVGLCITFVVLTIL 206
            EE+    T +S+D    S  + ++ L+A++ D++DLS+ + +   +  +F L E ++  R+ FV   +  V AL      + ST   R+  +      AN  +I  +  QQ+++ME QD QL  ++ ++  +  M   +  EL+EQ  ML D G EM    SRM +V +KL K    T  R  +C I  L    +V+ IL
Sbjct:   29 EELLQDGTQVSRDELDWSTNELRNCLRAIDWDLEDLSETINIVESNPGKFKLGEDELKERRDFVERTRSAVQAL------LTSTGQDRSSGLEAHMVSANSRYIEEQQEQQQLIMEEQDEQLELVSGSIRVLKDMSGRIGDELDEQAVMLGDFGDEMDQTSSRMDSVLKKLEKVSHMTSSRRQWCAIAVLVAVLIVVLIL 222          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A5J9VKP6 (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VKP6_9POAL)

HSP 1 Score: 75.5 bits (184), Expect = 4.480e-13
Identity = 56/210 (26.67%), Postives = 106/210 (50.48%), Query Frame = 0
Query:    4 EDPFPIVQEEVRAA----------WTSLSKDIS---HISEAQYQSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPS----------TSTSRADQIR-QANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRN 189
            +DPF +V+EE++ +          W   + +     H+++ +  +  +++E  V +L   + VA +D   + L E +++ R+++    +  V  +R+  E   S          T  SR +    Q ND FI SE  +Q++LM  QD +L EL+ +V+RIG +G  +H EL  Q ++L+DL  E+    +R+  V +K+   + + G + 
Sbjct:    5 QDPFYVVREEIQDSIDKLQHSFHRWEQTASNTGEYVHLTK-ELLTNCESIEWQVDELEKTITVASRDPAYYGLDEVELSRRRNWTVSARNQVGTVRRAVEKGKSNSAISKHQDLTGASRTNYYSTQDNDDFISSESDRQQLLMRQQDDELDELSESVQRIGNVGLTIHDELNSQERILNDLSFEIETTSNRLDFVQKKVAMVMKKAGIKG 213          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A3B5K5W3 (t-SNARE coiled-coil homology domain-containing protein n=4 Tax=Tetraodontidae TaxID=31031 RepID=A0A3B5K5W3_TAKRU)

HSP 1 Score: 69.3 bits (168), Expect = 1.090e-10
Identity = 60/242 (24.79%), Postives = 111/242 (45.87%), Query Frame = 0
Query:    1 MTREDPFPIVQEEVRAA----------WTSLSKDISHISEAQY-------QSRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRK---------------RAEIVPSTSTSRADQIR----QANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITFVVLTIL 206
            M+ EDPF +V+ EV+ A          W  L +D + +S  +        ++ L+A+E D++DLS+ + +   +  +F L E ++  R+ FV   +++V  +++               R  ++ ST   R+  +      AN  +I  +        + QD QL  ++ ++  +  M   +  EL+EQ  ML D G EM    SRM +V +KL K    T  R     +G+ +  +V+ ++
Sbjct:   11 MSVEDPFFVVKGEVQKALSRARSLFDRWEELLQDGTQVSRDELDWSTNELRNCLRAIEWDLEDLSETINIVESNPGKFRLGESELKERKDFVERTRKSVQEMKEQLSSPSAVAQAEKKNRQALLSSTIQDRSSMLEAHMVSANSRYIEEQQXXXXXXXQEQDDQLELVSGSIRVLKDMSGRIGDELDEQAVMLGDFGEEMQQTSSRMDSVLKKLEKVSHMTSSRRQWCAIGVLVAVMVVVLI 252          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A443NT16 (Target SNARE coiled-coil domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NT16_9MAGN)

HSP 1 Score: 65.5 bits (158), Expect = 2.450e-9
Identity = 53/199 (26.63%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   35 SRLQALECDVKDLSDAVQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPSTSTS--------RADQIR-----------------QANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVG-LCITFVVLTILV 207
            S  ++++  V +L  A+ VA +D   + + E ++  R+ + ++ +  V  + +  E     S S        R + +R                 Q ND FI SE  +Q +LM+ QD +L EL+ +V+RIG +G  +H+ELE Q ++L++L  +M    +R+  V +K+   + + G +    ++  L + F+VL +LV
Sbjct:   48 SSCESIQWQVDELDKAIAVATRDPAWYGIDEAELERRKKWTSNARNQVGTMWRSVEAGKGQSNSVNINLNATRQELMRFPNDRSYNAGRSNQYGAQDNDEFISSESDRQMLLMKQQDEELDELSASVQRIGGVGLTIHEELEGQEKILEELSLDMDSTANRLDFVQKKVALVMKKAGAKGQILMIAFLVVLFIVLFVLV 246          
BLAST of Ggra8235.t1 vs. uniprot
Match: A0A7S2EG53 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EG53_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.880e-9
Identity = 52/183 (28.42%), Postives = 89/183 (48.63%), Query Frame = 0
Query:   41 ECDVKDLSDAVQVARQDRQRFA-LSEHDIASRQHFVTDMQRNVLALRKRAEI----VPSTSTSRADQIRQA----------NDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQELEEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITFVVLTILVV 208
            E  +KDL   V++    R +F  +++ ++  R+ FV      + + R            TS  RA   R+A          + +F  +   Q  M+++ QD  L EL +AVER+G M  ++H+E+ +Q +ML +L  ++V A   +  V  KL K +      +  TI+GL +T +VL  LV+
Sbjct:  167 ESTLKDLQTTVRLVESRRDKFTHINDAELEDRRTFVQASHGRIASARSEMNSDEVKAKVTSDERAMANRRAGGNSEAFEAEDPAFDENSHAQARMMLQQQDETLDELDDAVERVGAMAGEIHEEIGQQSKMLSELEEDLVTAEEELGMVMGKLAKLLKTKNKWHLLTIIGLSLTVIVLFFLVI 349          
The following BLAST results are available for this feature:
BLAST of Ggra8235.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2V3J5S93.060e-10274.29Syntaxin-61 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A5J4YZT54.480e-2350.96Syntaxin-61 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
M2WY417.350e-2330.73Syntaxin 6 n=1 Tax=Galdieria sulphuraria TaxID=130... [more]
A0A2V0NKE45.500e-2229.82t-SNARE coiled-coil homology domain-containing pro... [more]
A0A061S1G21.740e-1626.24Syntaxin of plants SYP6 (Fragment) n=1 Tax=Tetrase... [more]
A0A3Q3M8C01.990e-1430.50Syntaxin 10 n=1 Tax=Labrus bergylta TaxID=56723 Re... [more]
A0A5J9VKP64.480e-1326.67t-SNARE coiled-coil homology domain-containing pro... [more]
A0A3B5K5W31.090e-1024.79t-SNARE coiled-coil homology domain-containing pro... [more]
A0A443NT162.450e-926.63Target SNARE coiled-coil domain-containing protein... [more]
A0A7S2EG534.880e-928.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..57
NoneNo IPR availableGENE3D1.20.58.90coord: 5..89
e-value: 1.9E-8
score: 36.4
NoneNo IPR availableGENE3D1.20.5.110coord: 126..188
e-value: 4.7E-15
score: 57.3
NoneNo IPR availablePANTHERPTHR12791:SF47SYNTAXINcoord: 103..210
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 210..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..209
NoneNo IPR availableCDDcd15841SNARE_Qccoord: 122..180
e-value: 4.61774E-14
score: 62.1908
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 116..181
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 114..181
e-value: 2.2E-8
score: 43.9
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 119..181
score: 13.609561
IPR015260Syntaxin 6, N-terminalPFAMPF09177Syntaxin-6_Ncoord: 31..84
e-value: 2.8E-8
score: 34.1
IPR039897BET1-like proteinPANTHERPTHR12791GOLGI SNARE BET1-RELATEDcoord: 103..210
IPR006012Syntaxin/epimorphin, conserved sitePROSITEPS00914SYNTAXINcoord: 125..165
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 4..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:208397..209029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8235.t1Ggra8235.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 208397..209029 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8235.t1 ID=Ggra8235.t1|Name=Ggra8235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MTREDPFPIVQEEVRAAWTSLSKDISHISEAQYQSRLQALECDVKDLSDA
VQVARQDRQRFALSEHDIASRQHFVTDMQRNVLALRKRAEIVPSTSTSRA
DQIRQANDSFIGSELRQQEMLMEHQDVQLGELANAVERIGIMGRDMHQEL
EEQGQMLDDLGGEMVDARSRMKAVHRKLNKFIAETGPRNFCTIVGLCITF
VVLTILVVTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR015260Syntaxin-6_N
IPR039897BET1
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE