Ggra8207.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8207.t1
Unique NameGgra8207.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length397
Homology
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0E0LH42 (SKP1-like protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LH42_ORYPU)

HSP 1 Score: 70.9 bits (172), Expect = 5.310e-11
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 0
Query:   28 TSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDC----VKLPDISSTELESVLAFCF---FCTSEYWTELSLDERAAWEDEFLGFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            +SDG+ FN+P A  ++S  L  N++        DDC    V LP+++S  L  ++ +C            E    E  +++ EF+  D   L +L  AS  + +K LLDLA +R A  I GK+P+Q+R+ F I  D  PEE+
Sbjct:   15 SSDGEHFNVPAAAASMSQ-LVSNMIE-------DDCTENGVPLPNVTSKVLAKIIDYCVKHAAAGDAAAVEEENKELKSFDAEFIDVDKTMLYDLLLASNFMNIKSLLDLACQRTADLIKGKSPEQIRKEFGIKNDFTPEEE 148          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0D9Y024 (SKP1-like protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9Y024_9ORYZ)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-10
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 0
Query:   28 TSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDC----VKLPDISSTELESVLAFCFF--CTSEYWTELSLDERA--AWEDEFLGFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            +SDG+ F + EA  ++S  ++  +         DDC    + LP+++S  L  ++ +C      S    E + DE+   +++ EF+  D   L +L  A+  + +K LLDLA +RVA  I GK+P+++R+ F+I  D  PEE+
Sbjct:   13 SSDGEHFEVSEAVASMSQQVSHMI--------EDDCTENGIPLPNVTSKILTKIIEYCKMHAAVSSETKEAAADEKKLKSFDAEFIAVDKTTLYDLILAANYMSIKSLLDLACQRVADLIKGKSPEEIRKEFNIKNDFTPEEE 147          
BLAST of Ggra8207.t1 vs. uniprot
Match: I1QCC5 (SKP1-like protein n=3 Tax=Oryza TaxID=4527 RepID=I1QCC5_ORYGL)

HSP 1 Score: 66.6 bits (161), Expect = 3.210e-9
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 0
Query:   27 KTSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAWEDEFLG-FDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            K+ DGK  ++ EA+  LS  +   +L    A   D C+  PDI    L  V+ +C    ++   E  L E   W+++F+   D   L ++  A+  L +  LLDL  +RVA +I GKTP+++R+ F+I  D   EE+
Sbjct:   52 KSKDGKQHDVTEASARLSKTIAGMILAGGGA---DQCIPTPDIDHETLRVVMQYCDKHAADDADEEDLKE---WDEDFVDELDQDALFDVIAAANYLDIDGLLDLTCKRVADTIKGKTPEEIRKEFNIVNDLSKEEE 182          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0E0H3D1 (Uncharacterized protein n=6 Tax=Oryza TaxID=4527 RepID=A0A0E0H3D1_ORYNI)

HSP 1 Score: 68.9 bits (167), Expect = 3.650e-9
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 0
Query:   27 KTSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAWEDEFLG-FDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            K+ DGK  ++ EA+  LS  +   +L        D C+  PDI    L  V+ +C    ++   E  L E   W+++F+   D   L ++  A+  L +  LLDL  +RVA +I GKTP+++R+ F+I  D   EE+
Sbjct:   54 KSKDGKQHDVTEASARLSKTIAGMILAGGXXXGADQCIPTPDIDHDTLRVVMQYCDKHAADDADEEDLKE---WDEDFVDELDQDALFDVIAAANYLDIDGLLDLTCKRVADTIKGKTPEEIRKEFNIVNDLSKEEE 187          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0D3GTS5 (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3GTS5_9ORYZ)

HSP 1 Score: 68.9 bits (167), Expect = 5.330e-9
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 0
Query:   27 KTSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAWEDEFLG-FDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            K+ DGK  ++ EA+  LS  +   +L        D C+  PDI    L  V+ +C    ++   E  L E   W+++F+   D   L ++  A+  L +  LLDL  +RVA +I GKTP+++R+ F+I  D   EE+
Sbjct:   52 KSKDGKQHDVTEASARLSKTIAGMILAGGXXXGADQCIPTPDIDHETLRVVMQYCDKHAADDADEEDLKE---WDEDFVDELDQDALFDVIAAANYLDIDGLLDLTCKRVADTIKGKTPEEIRKEFNIVNDLSKEEE 185          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0E0LH41 (SKP1-like protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LH41_ORYPU)

HSP 1 Score: 65.1 bits (157), Expect = 7.020e-9
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 0
Query:   28 TSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDC----VKLPDISSTELESVLAFCFFCTSEYWT------ELSLDERAAWEDEFL-GFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            ++DGK F +PE TV   + L  N++        DDC    V LP++ S  L  V+ +C     +         E + +E   ++ E +   D   L +L  A+  L +K LLD+  +RVA  + GKTP+Q+RE FSI  D  PEE+
Sbjct:   21 SADGKRFEVPE-TVASQSQLISNMIE-------DDCTDNGVPLPNVDSDILAMVVDYCNMHAGDAGAGDDAAKESNAEELKKFDAELVQALDNPVLFKLILAANFLNIKSLLDMTCQRVADMLAGKTPEQMRETFSIENDFTPEEE 158          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A2P6MPF6 (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MPF6_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 8.210e-9
Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = 0
Query:   23 RACFKTSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAWEDEFLGFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSIDCEPEEQV----TQVRARKRKHL 172
            R  F+ S G  F +  + V L     + L    +  + +  +  P++SST L  VL +C +    Y T  +  ++  W+ +F+      LCE+ +ASY L +K L++L    +A  I GK+P+++RE FSI  +  + V      VRAR  K +
Sbjct:   36 RTAFRNSLGGQFCVDGSYVILKKE-GRILASLVKNDEMEAVISFPEVSSTVLTKVLEYCKY---HYHTLDNEKDQKIWDAKFIQVKQSILCEMASASYFLDIKTLVNLTSRAIAAQISGKSPEEIRETFSIITQNYDSVYNSSLDVRARLHKKI 185          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0D9UXP2 (SKP1-like protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9UXP2_9ORYZ)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-8
Identity = 45/143 (31.47%), Postives = 76/143 (53.15%), Query Frame = 0
Query:   28 TSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDC----VKLPDISSTELESVLAFC---FFCTSEYWTELSLDERA-AWEDEFLGFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            +SDG  F + EA  ++S  +        Q    DDC    + LP+++S  L  +L +C      +SE   E   +E+  +++ EF+  D   L +L   +  + +K LL+LA +RVA  I GK+P+++R++F I  D  PEE+
Sbjct:   13 SSDGDHFEVSEAVASMSQQI--------QHMIEDDCTENGIPLPNVTSKVLTKILEYCEKHVAVSSE--KEADAEEKLKSFDAEFIAVDMTMLYDLILGANYMHIKSLLELACQRVADLIKGKSPEEIRKVFGIKNDFTPEEE 145          
BLAST of Ggra8207.t1 vs. uniprot
Match: A3BGJ0 (SKP1-like protein n=8 Tax=Oryza TaxID=4527 RepID=A3BGJ0_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 2.450e-8
Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 0
Query:   28 TSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDC----VKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAWEDEFLGFD---------PVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSI--DCEPEEQ 160
            ++DGK F + EA  + S  L  N++        DDC    V+LP++    L  V+ +C     +        + ++ E+E   FD         PV L +L  A+  L +K LLD+  +RVA  + GKTP+Q+RE FSI  D  PEE+
Sbjct:   21 SADGKRFEVTEAVASQSQ-LISNMIE-------DDCTENGVRLPNVDGDILTMVVDYCNMHAGDAAAAGDTMKASSTEEELKKFDAELVQALENPV-LFKLILAANFLNIKSLLDMTCQRVADMMSGKTPEQMRETFSIENDFTPEEE 159          
BLAST of Ggra8207.t1 vs. uniprot
Match: A0A0E0LNJ9 (Uncharacterized protein n=2 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LNJ9_ORYPU)

HSP 1 Score: 63.5 bits (153), Expect = 3.580e-7
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 0
Query:   27 KTSDGKVFNIPEATVTLSTYLTKNLLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDER--AAWEDEFLG-FDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLRELFSIDCEPEE 159
            K+ DGK  ++ EA+  LS  +   +L    A   D  +  PD+    L  V+ +C    +E+  + + DE+    W++ F+   D   L ++  A+  L +  LL+L  +RVA +I GKTP+++R+ F+ID   EE
Sbjct:   49 KSKDGKQHDVTEASARLSKTIAGMILAGGSA---DQYIPTPDVDYKTLRMVMQYC----NEHAADDTDDEKDLKEWDEGFVNALDQDALFDVIAAANYLDIDDLLNLTCKRVADTIKGKTPEEIRKEFNIDAVVEE 177          
The following BLAST results are available for this feature:
BLAST of Ggra8207.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0E0LH425.310e-1133.80SKP1-like protein n=1 Tax=Oryza punctata TaxID=453... [more]
A0A0D9Y0241.320e-1031.47SKP1-like protein n=1 Tax=Leersia perrieri TaxID=7... [more]
I1QCC53.210e-932.85SKP1-like protein n=3 Tax=Oryza TaxID=4527 RepID=I... [more]
A0A0E0H3D13.650e-932.12Uncharacterized protein n=6 Tax=Oryza TaxID=4527 R... [more]
A0A0D3GTS55.330e-932.12Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]
A0A0E0LH417.020e-933.56SKP1-like protein n=1 Tax=Oryza punctata TaxID=453... [more]
A0A2P6MPF68.210e-929.87Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0D9UXP21.330e-831.47SKP1-like protein n=1 Tax=Leersia perrieri TaxID=7... [more]
A3BGJ02.450e-833.11SKP1-like protein n=8 Tax=Oryza TaxID=4527 RepID=A... [more]
A0A0E0LNJ93.580e-730.88Uncharacterized protein n=2 Tax=Oryza punctata Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 340..381
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 125..160
e-value: 3.1E-8
score: 33.5
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 20..170
e-value: 3.3E-23
score: 84.5
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 25..83
IPR016897S-phase kinase-associated protein 1PANTHERPTHR11165SKP1coord: 26..166
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILY81382Skp1 dimerisation domain-likecoord: 98..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:134075..135265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8207.t1Ggra8207.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 134075..135265 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8207.t1 ID=Ggra8207.t1|Name=Ggra8207.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=397bp
MSSLDDIKLQCEEDYPPLNEKPRACFKTSDGKVFNIPEATVTLSTYLTKN
LLRAKQAQKPDDCVKLPDISSTELESVLAFCFFCTSEYWTELSLDERAAW
EDEFLGFDPVRLCELCNASYLLGVKRLLDLAVERVAKSIHGKTPQQLREL
FSIDCEPEEQVTQVRARKRKHLVRCDFMANEQNTRKQKRKPVEAILRIRP
PNTVDRTSLDSDNVEVRSSDSSEVQFVSATPAAAKQDDSHTTSNFCTKEE
LVFDDAETTKPSSILPMHQRSRPSERLSSYLSPQATFAEEEDLVPTPVRS
APVPPSPPAAVPPIAARVTGAPKTTTNSESKLPVDVRIELARIAERKKGH
EQQAKKIEEEIQRLMNERERVRDELAFEKLQMNTIYRKYNIKPEDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016072Skp1_comp_dimer
IPR011333SKP1/BTB/POZ_sf
IPR016897SKP1
IPR036296SKP1-like_dim_sf