Ggra8203.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8203.t1
Unique NameGgra8203.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length420
Homology
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A2V3J5W2 (rRNA-processing protein FCF1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5W2_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 2.060e-80
Identity = 130/219 (59.36%), Postives = 167/219 (76.26%), Query Frame = 0
Query:    1 MPRNTGRTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISKRPQRTFIRKKRKAKGPNPLSVKKSSKQFRT 219
            M  + G   QNRKVL+F+RVNF ++PP+ +LCD DIIH+++K D+YLKQ+LPN+L+ASAQP  T+CV+ DLR RG+E+S+AA+FAKR TRLPC H   L   +CLL RL + ++ K+ +AAAN   LKQ+A IPGIPLISI N+TKL LRPPNKATLD++   EK+KT  ISDADK++L R+   E + +P RT  R+ RKAKGPNPLSVKKS K   T
Sbjct:    1 MRHSKGGGGQNRKVLAFYRVNFNFIPPFQVLCDADIIHEAMKKDLYLKQTLPNMLSASAQPVVTSCVISDLRGRGNEYSSAAVFAKRATRLPCNHEGTLPAVDCLLRRLESHADPKVFVAAANRAILKQIASIPGIPLISIMNQTKLALRPPNKATLDHILLAEKSKTMAISDADKALLARVTEAEKASKPIRTIARRHRKAKGPNPLSVKKSRKPLET 219          
BLAST of Ggra8203.t1 vs. uniprot
Match: R7QS07 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS07_CHOCR)

HSP 1 Score: 198 bits (504), Expect = 6.000e-55
Identity = 95/211 (45.02%), Postives = 144/211 (68.25%), Query Frame = 0
Query:    5 TGRTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISKRPQRTFIRKKRKAKGPNPLSVKKSSK 215
            TG+ +  RKVLS++ VNF    PY +LCDG  I QS++ D++LK +LP +L  +A P  T+C++++LR  G +FSNA++FAKR TR+PCAH   +  +EC++ RLR   E K+  A  + + L +++R PGIP I+I N+TKL LR P++ATL +VQ+ E  KT  +  +DK+ L++ + E  SK       +K+++AKGPNPLS+KK+ K
Sbjct:    5 TGKGNNARKVLSYYSVNFAISAPYQVLCDGPTIFQSMRKDIFLKHALPTLLGGTAYPVVTDCIVKELRALGEDFSNASIFAKRATRVPCAHQDDVSASECIMARLRVPLEKKLFCATNDTELLAKISRTPGIPTITIVNETKLALRSPSRATLYHVQKQENAKTSCLGTSDKAFLKKFETETASKDHAPNPAKKRKRAKGPNPLSMKKAKK 215          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A7S0ZGA7 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGA7_9RHOD)

HSP 1 Score: 115 bits (289), Expect = 3.300e-26
Identity = 76/230 (33.04%), Postives = 127/230 (55.22%), Query Frame = 0
Query:    6 GRTSQN--RKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSN-AALFAKRITRLPCAHAAKLEVTECLLERLRTA---SETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISK-RPQRTFIRKKR------KAKGPNPLSVKKSSKQFRTRTD 222
            GR S    RK L F+RV+FG + P+ ++CDG +IH +L+N ++LK  LP  L + ++   T+C+  +L    S  +  AA FAKR  ++ C H +KL   +C+L  +++    S   +++A  +   + QL ++P   +I + N  KL L  P+ +  D  +  EK K  ++S+ ++ +L+ +  +  ++ R Q+    KKR      KAKGPNPLSVKK  K    + D
Sbjct:    4 GRKSSKTLRKSLKFYRVHFGLISPFKVVCDGTMIHHALQNQIFLKDELPKSLGSVSKIVVTHCIAAELHGLDSPITKPAARFAKRAEKVECTHESKLSAEDCILHFVQSKGAQSRGGVLVATHDEQLILQLKKLPNAAIIVLENG-KLELLEPSSSARDEAERREKVKL-SVSEQEQKVLKPLLEDAAAELRKQKGEEMKKRRXXXXXKAKGPNPLSVKKKVKHSEVKVD 231          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A162NFF3 (Uncharacterized protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NFF3_PHYB8)

HSP 1 Score: 113 bits (282), Expect = 1.580e-25
Identity = 70/211 (33.18%), Postives = 113/211 (53.55%), Query Frame = 0
Query:   12 RKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERI-KAEEISK--RPQRTFIRKKRKAKGPNPLSVKKSSKQFRT 219
            ++ L  + V FG   PY IL DGD   ++L   +Y+K SLP I+ A  +   T C + +L+ +G EF+NA + AKR     CAH   ++   C+ E + + ++    +A+ +      L  +PG+PL+ I  K  ++L P +  + + ++ +E  KT  +   + S+L+ I +A  I K   P+    +K  K KGPNPLSVKK  KQ  T
Sbjct:   10 KRTLHTYHVGFGLREPYQILVDGDFCKEALTQKIYIKDSLPEIMQAPTKLMVTECTIHELQSKGREFTNAMIVAKRFEHRRCAHKTPVKSAACISEIIGSTNQYHYCVASQDKKLRSHLRSVPGVPLLHI-KKNLVILEPMSNESKEALKRHEIEKTLPMG-KEASLLKGIGRAAGIIKDEEPKEKKTKKALKKKGPNPLSVKKKKKQQTT 218          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A7J6SRX2 (Small subunit processome component n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SRX2_PEROL)

HSP 1 Score: 113 bits (282), Expect = 4.390e-25
Identity = 67/216 (31.02%), Postives = 115/216 (53.24%), Query Frame = 0
Query:    7 RTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHA-AKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYV--QENEKTKTQTISDADKSIL--ERIKAEEISKRPQRTFIRKKRKAKGPNPLSVKKSSKQF 217
            R   +RKV+ F++  FG+  PY  L DG  I+ +LK+ +++K+ LP +L     P  T CV ++LR  G++FS +A+ A+   RL C H   +    +C+ ++L + +  + ++   +    +++ R+PG  LI +      ++  P++A++     QENEK   QT   +   IL  E  KAE +    + T  +K+R  + PNPLS KK   Q 
Sbjct:    5 RQKSHRKVMRFYQTAFGFQEPYRALIDGTFINAALKSKVHIKEQLPKLLGGRTTPVVTECVYQELRDLGADFSGSAIIARGYYRLKCGHTKGECSAADCITKQLASNNPKQYLVCTQDKALRERVRRVPGAGLIILHGGQVPIIEQPSEASMRVATKQENEKQAVQTWEKSKLPILRQEEAKAEAMVGDARDTSKKKRRGPRAPNPLSCKKRKVQM 220          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A6S7HKG8 (rRNA-processing UTP23 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HKG8_PARCT)

HSP 1 Score: 112 bits (279), Expect = 6.620e-25
Identity = 69/202 (34.16%), Postives = 105/202 (51.98%), Query Frame = 0
Query:   12 RKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISKRPQRTFIRKKRK-AKGPNPLSVKK 212
            +K ++ F+ +FG   PY IL DG     +L+N + +K+ LP  L+A  Q  TT CVL +L   G     A + AKR     C H   +  TEC    +   +E +  +A  +     +L +IPG+PL+ I N   +V+  P+        + +  +T+  +D ++  LER+KA E+    Q   IR+KRK  KGPNPLS KK
Sbjct:   10 KKYINLFKNSFGIFEPYQILVDGTFCQAALQNKINIKEQLPKYLDAEIQLLTTECVLNELESLGGALYGALVIAKRFKTRKCGHREHVSATECASHLVGEENEKRYFVATQDKQLRNRLRKIPGVPLLYI-NYNCIVMEKPSFVCTKKASQVQTARTEP-TDHERGTLERLKASELD---QPEVIRRKRKRTKGPNPLSCKK 206          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A1Y2CUS4 (rRNA-processing protein UTP23 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CUS4_9FUNG)

HSP 1 Score: 111 bits (278), Expect = 7.970e-25
Identity = 69/206 (33.50%), Postives = 108/206 (52.43%), Query Frame = 0
Query:    7 RTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISKRPQRTFIRKKRKAKGPNPLSVKK 212
            R  +N+K +  +   FG+  PY +L DG+ IH + +  M    +LP +L    +  TT CVL +LR  G++F+     AK++ R  C H   +  +ECL   + T ++ K  +A+ +      L  +PG PL+ + N   L+L PP+  T   ++E E  K       +K I +     +++  P RTF   K+KAKGPNPLSVKK
Sbjct:    5 RAKKNKKNMGIYAQIFGFREPYQLLLDGNFIHVNQQMKMDPWTALPKVLQGQVKLFTTTCVLSELRSLGADFNATVQTAKKLERRRCGHETPVGASECLKSVIGTDNKHKYGVASQDHTLRVHLRTVPGTPLLYVMNSV-LLLEPPSAETQRRIKEIESEKMLPKQFEEKVIKKLNPDAKVAPEPTRTF---KKKAKGPNPLSVKK 206          
BLAST of Ggra8203.t1 vs. uniprot
Match: rRNA-processing protein UTP23 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3F9A (rRNA-processing protein UTP23 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3F9A)

HSP 1 Score: 110 bits (274), Expect = 3.200e-24
Identity = 68/204 (33.33%), Postives = 108/204 (52.94%), Query Frame = 0
Query:   12 RKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTISDADKSILERIKAE---EISKRPQRTFIRKKRKAKGPNPLSVKK 212
            +K ++ F+ +FG   PY IL DG     +L+N + +K+ LP  L+A  Q  TT CVL +L   G     A + AKR     C+H   +  TEC+   +   +E +  +A  +     +  +IPG+PL+ I N   +V+  P+ A      E E+ +T+  ++ ++ ILER+K     EI KR       K+++AKGPNPLS K+
Sbjct:   10 KKYINLFKNSFGVFEPYQILIDGTFCQAALQNRINIKEQLPKYLDADIQLLTTECVLHELESLGGALYGALVIAKRFKTRKCSHREHVPATECVAHLVGDKNEKRYFVATQDKHLRNRFRKIPGVPLLYI-NYNCIVMEKPSFACTKKATEVERARTEP-TEHERGILERLKTNDEPEIKKR-------KRKRAKGPNPLSCKR 204          
BLAST of Ggra8203.t1 vs. uniprot
Match: A0A7J6P972 (Small subunit processome component n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P972_PEROL)

HSP 1 Score: 114 bits (284), Expect = 9.080e-24
Identity = 67/216 (31.02%), Postives = 116/216 (53.70%), Query Frame = 0
Query:    7 RTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHA-AKLEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYV--QENEKTKTQTISDADKSIL--ERIKAEEISKRPQRTFIRKKRKAKGPNPLSVKKSSKQF 217
            R   +RKV+ F++  FG+  PY  L DG  I+ +LK+ +++K+ LP +L     P  T CV ++LR  G++FS +A+ A+   RL C H   +    +C+ ++L + +  + ++   +    +++ R+PG  LI +      ++  P++A++     QENEK   QT   +   IL  E  KAE ++   + T  +K+R  + PNPLS KK   Q 
Sbjct:  196 RQKSHRKVMRFYQTAFGFQEPYRALIDGTFINAALKSKVHIKEQLPKLLGGRTTPVVTECVYQELRDLGADFSGSAIIARGYYRLKCGHTKGECSAADCITKQLASNNPKQYLVCTQDKALRERVRRVPGAGLIILHGGQVPIIEQPSEASVRVATKQENEKQAVQTWEKSKLPILRQEEAKAEAMAGDARDTSKKKRRGPRAPNPLSCKKRKVQM 411          
BLAST of Ggra8203.t1 vs. uniprot
Match: rRNA-processing protein UTP23 homolog isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03FEDB (rRNA-processing protein UTP23 homolog isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03FEDB)

HSP 1 Score: 108 bits (269), Expect = 1.930e-23
Identity = 71/210 (33.81%), Postives = 115/210 (54.76%), Query Frame = 0
Query:   12 RKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQSLPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAK-LEVTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLRPPNKATLDYVQENEKTKTQTI----SDADKSILERIKAEEISKRPQRTFIRKKRK-AKGPNPLSVKKSSK 215
            +K + FF+ +FG   PY ++ DG     +L N + +K+ LP  L+A+ Q  TT+CV+ +L+  G     A + AKR     C H  + +  TEC+   +   +E +  IA  + +    L +IPG+PL+ I N   +V+  P+     +V +   T+ QT     +D +   LE++K+ E+ K+P+   IR+KRK AKGPNPLS KK  +
Sbjct:   10 KKYIKFFKNSFGIFEPYQVIVDGTFCQAALLNKINIKEQLPKYLDANVQLLTTDCVVNELQNLGGSLYGAFVIAKRFKSRNCGHQDQHVSATECVTHLVGENNEKRYFIATQDKELRNALRKIPGVPLLYI-NYNCIVMERPS-----FVCQKRATEVQTARIEPTDREMGTLEQLKSSEL-KQPE--IIRRKRKRAKGPNPLSCKKKKR 210          
The following BLAST results are available for this feature:
BLAST of Ggra8203.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5W22.060e-8059.36rRNA-processing protein FCF1-like n=1 Tax=Gracilar... [more]
R7QS076.000e-5545.02Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZGA73.300e-2633.04Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A162NFF31.580e-2533.18Uncharacterized protein (Fragment) n=1 Tax=Phycomy... [more]
A0A7J6SRX24.390e-2531.02Small subunit processome component n=1 Tax=Perkins... [more]
A0A6S7HKG86.620e-2534.16rRNA-processing UTP23 homolog n=1 Tax=Paramuricea ... [more]
A0A1Y2CUS47.970e-2533.50rRNA-processing protein UTP23 n=1 Tax=Rhizoclosmat... [more]
rRNA-processing protein UTP23 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3F9A3.200e-2433.33rRNA-processing protein UTP23 homolog n=1 Tax=Dend... [more]
A0A7J6P9729.080e-2431.02Small subunit processome component n=2 Tax=Perkins... [more]
rRNA-processing protein UTP23 homolog isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03FEDB1.930e-2333.81rRNA-processing protein UTP23 homolog isoform X1 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1010coord: 4..158
e-value: 2.8E-32
score: 113.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..388
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..340
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..239
NoneNo IPR availablePANTHERPTHR12416:SF3RRNA-PROCESSING PROTEIN UTP23 HOMOLOGcoord: 6..282
NoneNo IPR availablePANTHERPTHR12416UNCHARACTERIZEDcoord: 6..282
NoneNo IPR availableCDDcd08553PIN_Fcf1-likecoord: 28..149
e-value: 1.95223E-31
score: 114.6
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 54..144
e-value: 3.6E-15
score: 56.1
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 26..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:127827..129086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8203.t1Ggra8203.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 127827..129086 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8203.t1 ID=Ggra8203.t1|Name=Ggra8203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MPRNTGRTSQNRKVLSFFRVNFGYVPPYYILCDGDIIHQSLKNDMYLKQS
LPNILNASAQPATTNCVLEDLRRRGSEFSNAALFAKRITRLPCAHAAKLE
VTECLLERLRTASETKIMIAAANVDFLKQLARIPGIPLISIFNKTKLVLR
PPNKATLDYVQENEKTKTQTISDADKSILERIKAEEISKRPQRTFIRKKR
KAKGPNPLSVKKSSKQFRTRTDGPEFEEGQEKNEVLHDINTSAKLEMNTM
PDSASGQNCVFSSGKRKRGRRRSSSKQNGVDEGQTSPPRQAKRRLISVSS
SIEGQDIKTSEGNDVASKGNSNASRNSTGSKMNSSNNTPKQGPRKERHVA
SLVKDDAHVFALNDSKNRDHKVYDERKQDSEERKDICIPLEPFGVGGEPP
SAKRKKQRKNRRRRPAKKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23
IPR029060PIN-like_dom_sf