Ggra8199.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8199.t2
Unique NameGgra8199.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length181
Homology
[Close]
BLAST of Ggra8199.t2 vs. uniprot
Match: A0A2V3J5X9 (Major facilitator superfamily domain-containing protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5X9_9FLOR)

HSP 1 Score: 165 bits (418), Expect = 3.850e-46
Identity = 84/144 (58.33%), Postives = 105/144 (72.92%), Query Frame = 0 
Query:   11 MAVLAAPGRFSSVFLQAHGLRQSQVGILLAIHPICALIATPFFCSFADIHDLKESTSMFLSGLAMFFFCAQIIALPELGILQGSQTFLFFIAVRVLFGVFAAPTMPLTNGIVLSNLKLRHGHKGHELLGHERLFGAASWALVSL 154
            +AV AAPGRF+ VFL++HGL +SQ+GILLA+   C+L++TP  CSFAD H  +EST++    L+  FF  QIIALP LG++QG   F FF+ VR+L  +F  P   L   IVLS LKL HGHKGHELLG ERL+GA SWA+VSL
Sbjct:    3 LAVQAAPGRFTPVFLRSHGLSESQIGILLALPTACSLLSTPLVCSFADRHKARESTALATQTLSTIFFLLQIIALPGLGLIQGGSVFAFFLLVRILQVMFFNPAYSLLISIVLSRLKLLHGHKGHELLGQERLWGAVSWAVVSL 146
The following BLAST results are available for this feature:
BLAST of Ggra8199.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5X93.850e-4658.33Major facilitator superfamily domain-containing pr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024989Major facilitator superfamily associated domainPFAMPF12832MFS_1_likecoord: 2..155
e-value: 7.9E-17
score: 61.2
IPR036259MFS transporter superfamilyGENE3D1.20.1250.20MFS general substrate transporter like domainscoord: 1..159
e-value: 3.9E-10
score: 41.4
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 4..126
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..162
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..122
NoneNo IPR availableTMHMMTMhelixcoord: 3..25
NoneNo IPR availableTMHMMTMhelixcoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 101..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:120760..121402 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8199.t2Ggra8199.t2Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 120760..121402 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8199.t2 ID=Ggra8199.t2|Name=Ggra8199.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=181bp
MRLGWLYFALMAVLAAPGRFSSVFLQAHGLRQSQVGILLAIHPICALIAT
PFFCSFADIHDLKESTSMFLSGLAMFFFCAQIIALPELGILQGSQTFLFF
IAVRVLFGVFAAPTMPLTNGIVLSNLKLRHGHKGHELLGHERLFGAASWA
LVSLGIEIPGWHENALRHLVSKQVTPTRAP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR036259MFS_trans_sf