Ggra8195.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8195.t1
Unique NameGgra8195.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Homology
BLAST of Ggra8195.t1 vs. uniprot
Match: R7QCS3 (40S ribosomal protein S9 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QCS3_CHOCR)

HSP 1 Score: 329 bits (844), Expect = 2.750e-113
Identity = 168/178 (94.38%), Postives = 173/178 (97.19%), Query Frame = 0
Query:    1 MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIAR 178
            M NYRNTSKTYRTPRRP+EKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTL+EKDPRR+FEG ALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLI+QRHIRVGKQLVNVPSF VRVDSQKHIDF+L SPFGGGRPGRVKRRAI R
Sbjct:    1 MVNYRNTSKTYRTPRRPFEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLDEKDPRRVFEGTALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIRQRHIRVGKQLVNVPSFMVRVDSQKHIDFSLNSPFGGGRPGRVKRRAIER 178          
BLAST of Ggra8195.t1 vs. uniprot
Match: M2W800 (40S ribosomal protein S9e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W800_GALSU)

HSP 1 Score: 295 bits (756), Expect = 7.040e-100
Identity = 148/174 (85.06%), Postives = 163/174 (93.68%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAI 176
            NYR  SKTYRTPRRP+EKERLD+EL+L G+YGLRNKRE+WRV+  LSKIR+AAR+LLTLEEKDPRRIFEGNALLRRLTR GLLDE+RQ+LD+VLSLKVQD LERRLQTQV+KLGLAKSIHHAR LI+QRHIRVGKQLVNVPSF VRVDSQKHIDF+L SPFGGGRPGRVKRR +
Sbjct:    4 NYRTCSKTYRTPRRPFEKERLDAELKLVGEYGLRNKRELWRVEFALSKIRAAARDLLTLEEKDPRRIFEGNALLRRLTRFGLLDETRQSLDHVLSLKVQDLLERRLQTQVLKLGLAKSIHHARVLIRQRHIRVGKQLVNVPSFMVRVDSQKHIDFSLDSPFGGGRPGRVKRRKL 177          
BLAST of Ggra8195.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: 40S ribosomal protein S9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7E10 (LOW QUALITY PROTEIN: 40S ribosomal protein S9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7E10)

HSP 1 Score: 296 bits (758), Expect = 8.540e-100
Identity = 151/177 (85.31%), Postives = 162/177 (91.53%), Query Frame = 0
Query:    1 MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIA 177
            M ++R  S T+RTPRRP+EKERLD+ELQL G YG RNKRE+WRVQ VLSKIRSAARELLTLEEKDPRR+F G ALLRRLTRLGLLDE++QALDYVLSLK+QDFLERRLQ QV KLGLAKSIHHAR LIKQRHIRVGKQLVNVPSF VR+DSQKHIDFAL SPFGGGRPGRVKRRAIA
Sbjct:    1 MPDHRKYSTTFRTPRRPFEKERLDNELQLVGMYGXRNKREVWRVQFVLSKIRSAARELLTLEEKDPRRVFXGFALLRRLTRLGLLDETKQALDYVLSLKIQDFLERRLQKQVFKLGLAKSIHHARVLIKQRHIRVGKQLVNVPSFMVRIDSQKHIDFALNSPFGGGRPGRVKRRAIA 177          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A5J4YNF5 (40S ribosomal protein S9-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNF5_PORPP)

HSP 1 Score: 289 bits (740), Expect = 1.860e-97
Identity = 146/171 (85.38%), Postives = 159/171 (92.98%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKR 173
            +YRN SKT RTPRRP+EKERLD ELQ+ GKYGL+NKRE+WRVQ+VLSKIRSAAR+LLTLE +DP+RIFEG ALLRRLTRLGLLDE+ QALDYVLSLKV DFLERRLQTQV KLGLAKSIHHAR LI+QRH+RVGKQLVNVPSF VRVDSQKHIDFAL+SPFGGG PGRVKR
Sbjct:    4 DYRNRSKTSRTPRRPFEKERLDQELQIVGKYGLKNKREVWRVQMVLSKIRSAARDLLTLEPEDPKRIFEGRALLRRLTRLGLLDENNQALDYVLSLKVNDFLERRLQTQVFKLGLAKSIHHARVLIRQRHVRVGKQLVNVPSFLVRVDSQKHIDFALSSPFGGGPPGRVKR 174          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A7S1TGT7 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGT7_9RHOD)

HSP 1 Score: 286 bits (733), Expect = 2.090e-96
Identity = 145/172 (84.30%), Postives = 159/172 (92.44%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRR 174
            +YR  SKT RTPRRP+EKERLD+ELQL GKYGLRNKRE+WRV L LS+IRS+AR LLTLEEK+PRRIFEG+A+LRRLTRLGLLDE RQ+LDYVLSLKVQDFLERRLQTQV +LGLAKSIHHAR LI QRHIRVGKQ+VNVPSF VR DSQKHIDF+L+SPFGGGRPGRVKRR
Sbjct:    4 DYRRYSKTSRTPRRPFEKERLDAELQLVGKYGLRNKREVWRVLLALSRIRSSARSLLTLEEKNPRRIFEGSAMLRRLTRLGLLDEKRQSLDYVLSLKVQDFLERRLQTQVFELGLAKSIHHARVLINQRHIRVGKQMVNVPSFLVRTDSQKHIDFSLSSPFGGGRPGRVKRR 175          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A1X6NYN7 (Ribosomal_S4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYN7_PORUM)

HSP 1 Score: 280 bits (717), Expect = 6.330e-94
Identity = 140/174 (80.46%), Postives = 160/174 (91.95%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAI 176
            +YRN SKT RTPRRP+EKERLDSEL+  G+YGLRNKRE+WRVQLVLSK+R+ AR LLTL+EKDPRR+FEG ALLRRLTRLG+LDE +QALDYVLSL V++FLERRLQTQV +LGLAKS+HHAR +I QRHIRVGKQLVNVPSF VR+DSQKHIDFAL SP+GGGRPGRV+RRA+
Sbjct:    4 DYRNYSKTSRTPRRPFEKERLDSELETVGQYGLRNKREVWRVQLVLSKMRTTARTLLTLDEKDPRRMFEGAALLRRLTRLGVLDEKKQALDYVLSLNVKEFLERRLQTQVFRLGLAKSMHHARVIIHQRHIRVGKQLVNVPSFLVRMDSQKHIDFALHSPYGGGRPGRVRRRAL 177          
BLAST of Ggra8195.t1 vs. uniprot
Match: E9D4L0 (40S ribosomal protein S9 n=8 Tax=Onygenales TaxID=33183 RepID=E9D4L0_COCPS)

HSP 1 Score: 278 bits (711), Expect = 4.520e-93
Identity = 137/172 (79.65%), Postives = 157/172 (91.28%), Query Frame = 0
Query:    5 RNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAI 176
            R+ SKTY+ PRRPYE  RLDSEL++ G+YGLRNKRE+WRVQL LSKIR AARELLTLEEKDP+R+FEGNAL+RRL R+G+LDESR  LDYVL+LKV+DFLERRLQTQV +LGLAKSIHHAR LI+QRHIRVGKQ+VNVPSF VR+DSQKHIDFALTSP GGGRPGRV+R+ +
Sbjct:    4 RSYSKTYKVPRRPYESARLDSELKMVGEYGLRNKREVWRVQLTLSKIRRAARELLTLEEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKVEDFLERRLQTQVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFIVRLDSQKHIDFALTSPLGGGRPGRVRRKKM 175          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A7J7IPL0 (40S ribosomal protein S9 n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7J7IPL0_9RHOD)

HSP 1 Score: 278 bits (710), Expect = 6.880e-93
Identity = 142/176 (80.68%), Postives = 157/176 (89.20%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIAR 178
            +YRN SK Y+TPRRP+EKERLD+EL++ G+YGLRNKRE+WRVQ  LSKIR+AARELLT +EKD RRI EG ALLRRLTR GLLD+++Q L+YVLSLKVQDFLERRLQTQV KLGLAKSIHHAR LI QRHIRVGKQLV VPSF VRVDSQKHIDFA TSPFGGGRPGRVKRR + R
Sbjct:    4 SYRNCSKVYKTPRRPFEKERLDAELKICGEYGLRNKREVWRVQYALSKIRAAARELLTKDEKDERRIVEGAALLRRLTRYGLLDQTQQDLNYVLSLKVQDFLERRLQTQVFKLGLAKSIHHARVLILQRHIRVGKQLVTVPSFMVRVDSQKHIDFAPTSPFGGGRPGRVKRRRLRR 179          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A7S0Q8A1 (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q8A1_9EUKA)

HSP 1 Score: 278 bits (710), Expect = 8.730e-93
Identity = 139/174 (79.89%), Postives = 158/174 (90.80%), Query Frame = 0
Query:    4 YRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIA 177
            YRN SKT++TPRRP+EKERLD EL+L G+YGLRNKRE+WRVQ  L+KIR AAR LLTL+EKD +R+FEG ALLRRLTRLGLLDE++Q LD+VL LK+QDFLERRLQTQV KLGLAKSIHHAR LI+QRHIRVGKQ+VNVPSF VR+DSQKHIDFALTSPFGGGR GRVKR+ +A
Sbjct:    7 YRNYSKTFKTPRRPFEKERLDQELKLIGEYGLRNKREVWRVQFQLAKIRHAARTLLTLDEKDAKRLFEGAALLRRLTRLGLLDETKQKLDFVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRIDSQKHIDFALTSPFGGGRFGRVKRKHLA 180          
BLAST of Ggra8195.t1 vs. uniprot
Match: A0A0H2SFL3 (40S ribosomal protein S9 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2SFL3_9AGAM)

HSP 1 Score: 277 bits (709), Expect = 9.760e-93
Identity = 134/170 (78.82%), Postives = 158/170 (92.94%), Query Frame = 0
Query:    5 RNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRR 174
            RN SKTY+ PRRP+E  RLD+E++LAG+YGLRNKREIWR+ LVLSKIR AARELL LEEKDP+R+FEGNAL+RRL R+G+LDE+R+ LDYVL+LK++DFLERRLQTQV KLGLAKSIHHAR L++QRHIRVGKQ+VNVPSF VR+DSQ+HIDFALTSP+GGGRPGRVKR+
Sbjct:    6 RNHSKTYKVPRRPFESARLDAEMKLAGEYGLRNKREIWRISLVLSKIRRAARELLKLEEKDPKRLFEGNALIRRLVRIGVLDETRRRLDYVLALKIEDFLERRLQTQVFKLGLAKSIHHARVLVRQRHIRVGKQIVNVPSFVVRLDSQRHIDFALTSPYGGGRPGRVKRK 175          
The following BLAST results are available for this feature:
BLAST of Ggra8195.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QCS32.750e-11394.3840S ribosomal protein S9 n=2 Tax=Rhodymeniophycida... [more]
M2W8007.040e-10085.0640S ribosomal protein S9e n=1 Tax=Galdieria sulphu... [more]
LOW QUALITY PROTEIN: 40S ribosomal protein S9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7E108.540e-10085.31LOW QUALITY PROTEIN: 40S ribosomal protein S9-like... [more]
A0A5J4YNF51.860e-9785.3840S ribosomal protein S9-1 n=1 Tax=Porphyridium pu... [more]
A0A7S1TGT72.090e-9684.30Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NYN76.330e-9480.46Ribosomal_S4 domain-containing protein n=1 Tax=Por... [more]
E9D4L04.520e-9379.6540S ribosomal protein S9 n=8 Tax=Onygenales TaxID=... [more]
A0A7J7IPL06.880e-9380.6840S ribosomal protein S9 n=3 Tax=cellular organism... [more]
A0A7S0Q8A18.730e-9379.89Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A0H2SFL39.760e-9378.8240S ribosomal protein S9 n=1 Tax=Schizopora parado... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 5..105
e-value: 4.2E-22
score: 89.4
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 10..61
e-value: 7.9E-6
score: 26.7
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 106..170
e-value: 3.5E-4
score: 29.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 106..149
e-value: 8.1E-11
score: 41.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 106..150
e-value: 1.98184E-7
score: 44.5478
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 105..160
e-value: 1.4E-12
score: 49.7
IPR005710Ribosomal protein S4/S9, eukaryotic/archaealTIGRFAMTIGR01018TIGR01018coord: 2..163
e-value: 1.7E-66
score: 221.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..193
NoneNo IPR availablePANTHERPTHR11831:SF540S RIBOSOMAL PROTEIN S9coord: 9..191
NoneNo IPR availablePROSITEPS50889S4coord: 106..180
score: 10.484679
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 9..157
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 9..191
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 104..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:85478..86184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8195.t1Ggra8195.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 85478..86184 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8195.t1 ID=Ggra8195.t1|Name=Ggra8195.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGGAEDEDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR005710Ribosomal_S4/S9_euk/arc
IPR022801Ribosomal_S4/S9
IPR018079Ribosomal_S4_CS