Ggra8194.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8194.t1
Unique NameGgra8194.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Homology
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A2V3J775 (DNA-directed RNA polymerase III subunit RPC8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J775_9FLOR)

HSP 1 Score: 350 bits (899), Expect = 3.580e-119
Identity = 168/238 (70.59%), Postives = 192/238 (80.67%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMSIVGALFDAVLQDNQGLGDPLWXXXXXXXXXXXXXXXXXXGLEEQVPVGEEGIVEGQEKE 238
            MFKLVTIEDV+LVPARLFGYPRLE+LEYVINKRLSDK+IPGVGLVIAFW+WVKVG+D+LQIHSGE +TKCTFRVVVF+PFEGE +F RVSGAY+ G+FME+GFFDA+ V  ENLPRPS YDE ERVWIWKP FEE  + QT+YMDVTNESVFR MELMFEDSWR+PP+E+  +GRNPMSI  AL+D  +QDNQGLGDPLW                  G +E+  V E+G  EG E E
Sbjct:    1 MFKLVTIEDVVLVPARLFGYPRLESLEYVINKRLSDKIIPGVGLVIAFWDWVKVGEDALQIHSGESNTKCTFRVVVFSPFEGEAVFGRVSGAYDGGVFMELGFFDAITVKKENLPRPSSYDEDERVWIWKPTFEEEGEAQTFYMDVTNESVFRVMELMFEDSWRIPPTERNVEGRNPMSIFAALYDEAVQDNQGLGDPLWWYEEGEGEDEGEEGGVGDGAKEEAEVLEDG--EGGEGE 236          
BLAST of Ggra8194.t1 vs. uniprot
Match: M2XAH4 (DNA-directed RNA polymerase III subunit C25 isoform 1 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAH4_GALSU)

HSP 1 Score: 127 bits (320), Expect = 1.100e-32
Identity = 61/164 (37.20%), Postives = 100/164 (60.98%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWR 164
            MFKL  +ED L +    F  P+ +AL Y ++++ S++++PGVGL +  W+W+K  +D L    G   TK  FR++VF P  GEV+  RV  + + GL++ + FF+ +F+    L  PS +DE E+VWIWK    +G D    ++DV  +  FR +++++E+S R
Sbjct:    1 MFKLAVLEDTLRISPERFSLPKFDALCYAVHRKYSNRIVPGVGLCVGLWDWLKAEEDYLHPGDGGSWTKVIFRLLVFEPQVGEVIIGRVEHSSSEGLYVSVDFFNNIFIDRLALQEPSVFDEEEQVWIWK---YQGHD---LHIDVGEDIRFRVVKVVYENSDR 158          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A0C2CNL1 (RNA polymerase Rpb7 protein n=3 Tax=Ancylostoma TaxID=29169 RepID=A0A0C2CNL1_9BILA)

HSP 1 Score: 123 bits (309), Expect = 9.570e-31
Identity = 72/202 (35.64%), Postives = 107/202 (52.97%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMS--IVGALFDAVLQDNQGLGDPLW 200
            MF L  +ED + V     G      L   IN+RLS+KV+P +GL I  ++ ++VG   +    G   TK  FR+VVF PF  EV+ ARV  + +HGL + + FF+ + +P+E LP P  +++SE+VW W+   E+G  P   YMD      FR +E +F D   V P+   E+ +   S  I+G + +       GLG   W
Sbjct:    1 MFVLALLEDTVAVKPHELGKELGSVLRRRINQRLSNKVVPELGLCICVYDLLEVGVTYILPGEGSGHTKVKFRLVVFRPFVDEVIQARVVSSNSHGLTLSVEFFEDIIIPAERLPEPHVFEQSEQVWYWEYPAEDGQPPARLYMDPGKTVRFRVVENIFRD---VKPNLTPEEAQKEKSYEIIGTMAET------GLGCVAW 193          
BLAST of Ggra8194.t1 vs. uniprot
Match: B6K0P2 (DNA-directed RNA polymerase III complex subunit Rpc25 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K0P2_SCHJY)

HSP 1 Score: 121 bits (304), Expect = 4.470e-30
Identity = 72/209 (34.45%), Postives = 104/209 (49.76%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWK-PVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPS--------EKKEDGRNPMSIVGALFDAVLQDNQGLGDPLW 200
            MF L  I DV+ +    F  P  EAL   INK+ ++KVI  VGL IA ++++ +G+  ++   G       FR++VF PF GEV+  R+      G+ + +GFFD +FVP E LP PS Y+  ER W+W+ P  E   +P   +MDV  E  F+     F D     PS        + + +   P S+V +          GLG P W
Sbjct:    1 MFVLSVISDVVKIHPSDFWKPTKEALSDEINKKYANKVIQQVGLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTELGIRVTLGFFDDIFVPKEMLPDPSVYNAQERAWVWRVPSEETDGEPSELFMDVGEEIRFQIESEHFIDISPSRPSANSAAATTDVRTEAEAPYSLVASC------SKDGLGIPAW 203          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A0D8Y3L5 (RNA polymerase Rpb7 protein n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8Y3L5_DICVI)

HSP 1 Score: 119 bits (297), Expect = 6.590e-29
Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMS--IVGALFDAVLQDNQGLGDPLW 200
            MF L  +ED +++     G      L   IN+RLS++++P +GL I  ++ ++VG   +    G   T+  FR+VVF PF  EV+ ARV+ + + GL + + FF+ + +P++ LP P  +++SE+VW W+   ++G  P   YMD      FR +E +F D   V P+   +D +N  S  I+G + +       GLG   W
Sbjct:    6 MFVLALLEDTIVIKPHELGIELGSVLRRRINQRLSNRIVPQLGLCICVYDLLEVGVTYILPGEGSGHTRVKFRLVVFRPFVDEVIQARVASSSSEGLKLSVEFFEDITIPADRLPEPHIFEQSEKVWYWEYPSDDGEPPARLYMDPGKIVRFRVVENIFRD---VKPNPTSDDVQNEKSYEIIGTMAET------GLGCVAW 198          
BLAST of Ggra8194.t1 vs. uniprot
Match: DNA-directed RNA polymerase III subunit RPC8 isoform X1 n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9DB49 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9DB49)

HSP 1 Score: 118 bits (295), Expect = 8.580e-29
Identity = 65/205 (31.71%), Postives = 107/205 (52.20%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKE-----DGRNPMSIVGALFDAVLQDNQGLGDPLW 200
            MF +V ++DV+  P  +F     E     +N +L++KVI  VGL IA ++ +K+G   +    G   TK  FR +VF PF  E++  ++      G+ + +GFFD + +PS +L  PS +DE E+VW+W+  F+   D    +MD+     FR +  +F ++  V   EK E     + + P SI+G++ +       GLG   W
Sbjct:    1 MFVIVELKDVVRTPPAVFNKKLDETTAGHLNSKLANKVITNVGLCIALFDILKMGDSFIFPGDGASHTKVEFRFIVFRPFIDEIIVGKIKSCSKDGVCVTLGFFDDIMIPSTSLQHPSRFDEMEQVWVWQ--FDNDGDTHDLFMDIGESIRFRVVTEVFVETSPVTCPEKMEVSTEPESKVPYSIIGSISEP------GLGVLSW 197          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A368FUD1 (Putative DNA-directed RNA polymerase n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368FUD1_ANCCA)

HSP 1 Score: 123 bits (308), Expect = 8.010e-28
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMS--IVGALFDAVLQDNQGLGDPLW 200
            MF L  +ED + V     G      L   IN+RLS+K++P +GL I  ++ ++VG   +    G   TK  FR+VVF PF  EV+ ARV  + +HGL + + FF+ + +P+E LP P  +++SE+VW W+   E+G  P   YMD      FR +E +F D   V P+   E+ +   S  I+G + +       GLG   W
Sbjct: 1739 MFVLALLEDTVAVKPHELGKELGSVLRRRINQRLSNKIVPELGLCICVYDLLEVGVTYILPGEGSGHTKVKFRLVVFRPFVDEVIQARVVSSNSHGLTLSVEFFEDIIIPAERLPEPHVFEQSEQVWYWEYPAEDGQPPARLYMDPGKTVRFRVVENIFRD---VKPNLTPEEAQKEKSYEIIGTMAET------GLGCVAW 1931          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A6A6ISN4 (DNA-directed RNA polymeras-like protein III 25 kDa polypeptide n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6ISN4_9PLEO)

HSP 1 Score: 115 bits (289), Expect = 9.900e-28
Identity = 66/201 (32.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMSIVGALFDAVLQDNQ-GLGDPLW 200
            MF L TIED++ +P R FG P  +AL+  IN + S+K+I  VGL +  W+ ++  +  +   +G  +    FR+ VF PF GE+L+ R+  A   G+ +++ F   VF+P +NL   S +DE E  WIW+P  E GA+    + D     +FR  +  + D  + P   +K +           +  +   NQ GLG  LW
Sbjct:    1 MFILTTIEDLIQIPPRDFGKPSAQALKDAINAKYSNKIIQKVGLCLCMWDLLQTSEGLIGHGTGLVNVNVEFRMTVFRPFRGEILYGRIKSANEEGIVIDLDFTSEVFIPHQNLFENSTFDEGESTWIWRP--EGGAE---LFFDKGEPVLFRVEQEEWID--QKPTMVRKNEQGEVEETRDTAWRLIGSMNQSGLGPTLW 194          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A0N4W8X7 (Uncharacterized protein n=2 Tax=Haemonchus TaxID=6288 RepID=A0A0N4W8X7_HAEPC)

HSP 1 Score: 115 bits (288), Expect = 1.190e-27
Identity = 65/202 (32.18%), Postives = 107/202 (52.97%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMS--IVGALFDAVLQDNQGLGDPLW 200
            MF L  +ED + +     G      +   IN+RLS+K++P +GL I  ++ ++VG   +    G   T+  FR+VVF P+  EV+ ARV  + + GL + + FF+ + +P+E LP P  +++SE++W W+   E+G  P   YMD      FR +E +F+D   V P+   E+ +   S  I+G + +       GLG   W
Sbjct:    1 MFVLALLEDTITIKPHELGKEIGSVVRRRINQRLSNKIVPDLGLCICVYDLLEVGVAYILPGEGSGHTRVKFRLVVFRPYVDEVIQARVVSSTSQGLTLSVEFFEDITIPAERLPEPHVFEQSEQIWYWEYPSEDGEPPAKLYMDPGKTVRFRVVENIFKD---VKPNLTPEEAQKEKSYEIIGTMAET------GLGCVAW 193          
BLAST of Ggra8194.t1 vs. uniprot
Match: A0A2V1DMR2 (DNA-directed RNA polymeras-like protein III 25 kDa polypeptide n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1DMR2_9PLEO)

HSP 1 Score: 115 bits (287), Expect = 1.950e-27
Identity = 64/201 (31.84%), Postives = 107/201 (53.23%), Query Frame = 0
Query:    1 MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWEWVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFMEMGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNESVFRAMELMFEDSWRVPPSEKKEDGRNPMSIVGALFDAV-LQDNQGLGDPLW 200
            MF L TIED++ +  + FG P  +A++  IN + S+KVI  VGL +  W+ ++  +  +   +G  +    FR+ VF PF GE+L+ R+  +   G+ +++ F   VFVP  NL   S +D++E+ WIWK   E G++    + D     +F+     + D  + P  E+K+D  N +   G  +  + L +  GLG  LW
Sbjct:    1 MFILTTIEDLIQITPQEFGKPSAQAIKDAINTKYSNKVIQNVGLCLCLWDILQTSEGLIGHGTGLVNVNVEFRMTVFRPFRGEILYGRIKSSNEEGIILDLDFTSEVFVPYTNLFEGSDFDQTEQTWIWK--HEGGSE---LFFDRGESVLFKVDREEWYD--QKPTIEQKDDEGNVIETRGTAWRLIGLMNFSGLGPTLW 194          
The following BLAST results are available for this feature:
BLAST of Ggra8194.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J7753.580e-11970.59DNA-directed RNA polymerase III subunit RPC8 n=1 T... [more]
M2XAH41.100e-3237.20DNA-directed RNA polymerase III subunit C25 isofor... [more]
A0A0C2CNL19.570e-3135.64RNA polymerase Rpb7 protein n=3 Tax=Ancylostoma Ta... [more]
B6K0P24.470e-3034.45DNA-directed RNA polymerase III complex subunit Rp... [more]
A0A0D8Y3L56.590e-2932.67RNA polymerase Rpb7 protein n=1 Tax=Dictyocaulus v... [more]
DNA-directed RNA polymerase III subunit RPC8 isoform X1 n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9DB498.580e-2931.71DNA-directed RNA polymerase III subunit RPC8 isofo... [more]
A0A368FUD18.010e-2835.15Putative DNA-directed RNA polymerase n=1 Tax=Ancyl... [more]
A0A6A6ISN49.900e-2832.84DNA-directed RNA polymeras-like protein III 25 kDa... [more]
A0A0N4W8X71.190e-2732.18Uncharacterized protein n=2 Tax=Haemonchus TaxID=6... [more]
A0A2V1DMR21.950e-2731.84DNA-directed RNA polymeras-like protein III 25 kDa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 81..202
e-value: 3.7E-21
score: 77.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..238
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 1..202
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..80
e-value: 1.0E-15
score: 59.8
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..77
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 83..172
e-value: 2.2E-16
score: 60.2
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 1..202
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 79..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:84092..84943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8194.t1Ggra8194.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 84092..84943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8194.t1 ID=Ggra8194.t1|Name=Ggra8194.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MFKLVTIEDVLLVPARLFGYPRLEALEYVINKRLSDKVIPGVGLVIAFWE
WVKVGQDSLQIHSGECSTKCTFRVVVFAPFEGEVLFARVSGAYNHGLFME
MGFFDAVFVPSENLPRPSHYDESERVWIWKPVFEEGADPQTYYMDVTNES
VFRAMELMFEDSWRVPPSEKKEDGRNPMSIVGALFDAVLQDNQGLGDPLW
WYEEEEAGGEEEGEEEEEGLEEQVPVGEEGIVEGQEKEEMVVKEEKIEAM
EVGNGYVDENAGNSYEGDHVDSQWHPGLEGEGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR013238RNA_pol_III_Rbc25
IPR045113Rpb7-like
IPR012340NA-bd_OB-fold