Ggra8173.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8173.t1
Unique NameGgra8173.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Homology
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A2V3J5X5 (rRNA biogenesis protein RRP36 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5X5_9FLOR)

HSP 1 Score: 256 bits (654), Expect = 4.160e-83
Identity = 138/221 (62.44%), Postives = 168/221 (76.02%), Query Frame = 0
Query:    2 EEPTLGEVLHKRERVASAAHAALQKFKRNRL----EIAPKSLGGRGKKSRPREISSRMPVPVGRERCLGIQNGAQQ-RSVRNFDPRFEEHCGDLLDQHVERNYAFVRSIRNSEKKAFEDRVKKNPEDVEASHELKSMAQDEVRRNAFLRRRNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRP 217
            EE T+GE+L K +      +A     +  R     E  PKS   R KKSRPREISSR PVPVGRERCLGI +G +  RSV+ FDPRFEEHCG+L + H+ERNYAF++S+R SE+K  E+ VK NP D EA  +L+SM QDEVRR A  RRR+I+  ++K+EKEAVKRGKQPYFLKEKD+R LE+KA+F++LKKKGG+KKYIQKRRKRL  KD+KLLPNRRP
Sbjct:   13 EEETMGEILQKEKPSYEHGNALTHSGRYGRFTSGSERPPKSTSTRKKKSRPREISSRRPVPVGRERCLGIDSGVEHSRSVKKFDPRFEEHCGELREGHIERNYAFIQSLRASERKQLENAVKANPIDEEALGKLRSMEQDEVRRRAIERRRDIMKNFRKEEKEAVKRGKQPYFLKEKDIRKLEVKAKFDDLKKKGGIKKYIQKRRKRLTGKDRKLLPNRRP 233          
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A022QQH0 (rRNA biogenesis protein RRP36 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QQH0_ERYGU)

HSP 1 Score: 103 bits (256), Expect = 3.040e-23
Identity = 80/189 (42.33%), Postives = 117/189 (61.90%), Query Frame = 0
Query:   41 GRGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFV-RSIRNSEKKAFEDRVKKNPEDVEASHELK---SMAQDEVRRNAFLRRRN-ILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRPFSRPGSE 224
            GR  K+RP EISS+ PV   RE    IQ    ++ VR  DPRFE  CG+L     ++ Y F+  +   +EK+  + R+KK  +D EA +ELK   S    E++  A  R  N IL+ +KK E+EA K+GKQPY+LK+ D+R  ++  ++ ELK+ G L+ +I+K+RK+ A+KD+K +P RRP S  G E
Sbjct:   67 GRVNKNRPMEISSKKPVSRFRE---VIQ--VPKKVVR--DPRFESLCGELNVDGFKKRYNFIYENTLPAEKQELKKRMKK-VKDPEAVNELKDQISRIDKELKSAAPKRTENDILAEHKKKEREAAKKGKQPYYLKKSDIRKQKLIEKYNELKESGKLEAFIEKKRKKNAAKDQKYMPYRRP-SEQGDE 246          
BLAST of Ggra8173.t1 vs. uniprot
Match: ribosomal RNA processing protein 36 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04755D (ribosomal RNA processing protein 36 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04755D)

HSP 1 Score: 102 bits (253), Expect = 5.920e-23
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 0
Query:   42 RGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFVRSIRNSEKKAFEDRVKKNPEDVEASHELKS----MAQDEVRRNAFLRRRNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRR 216
            R  K+RPRE+SS+ PV +        +  A      N DPRF+  CG    +H ER Y+FV  IR+ EKK  ++ +KK  +DV    ++ S    M Q+E  RN    RR  +   ++++   +K+GK+P++L++ + + LE+  +F +LK+   L++Y+ K+RKR A+K +KLLP  R
Sbjct:   59 RKNKNRPREMSSKRPVSI-------FKQAAPVAKKVNRDPRFDNLCGKFSKEHFERAYSFVDDIRSREKKEVKNAIKKE-KDVNQKSKMNSLLQRMEQNEKTRNFNKLRREKIKQKREEDLALIKQGKRPFYLRKSEKKKLELAEKFNKLKESKKLERYLSKKRKRNATKQRKLLPKER 229          
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A4D9A4T7 (rRNA biogenesis protein RRP36 n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9A4T7_SALSN)

HSP 1 Score: 101 bits (252), Expect = 3.250e-22
Identity = 77/216 (35.65%), Postives = 130/216 (60.19%), Query Frame = 0
Query:   12 KRERVASAAHAALQKFKRNRLEIA-----PKSLGGRGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFV-RSIRNSEKKAFEDRVKKNPEDVEASHELKSMAQ--DEVRRNAFLRR--RNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRP 217
            KRE  A      LQ+ + +  ++      P+  GGR  K+RP EISS+ PV   RE    IQ  A ++ +R  DPRFE  CG+L     ++ Y F+  +   +EK+  + ++KK  +D +A  ELK      D+  ++  ++R  ++IL+ +KK E++A K+GKQPY+LK+ +++  ++  +F+ELK+ G L+ +I+K+R+R A+KD + +P RRP
Sbjct:   87 KREIAAEVTFEELQRARSDGSDLVFRKPKPEKNGGRANKNRPMEISSKKPVSRFRE---VIQ--APKKVIR--DPRFESLCGNLDVNGHKKRYNFIYENTLPAEKEELKKQMKKT-KDPKAVGELKDQLTRIDKELKSVAVKRTEKDILAEHKKKERDAAKKGKQPYYLKKSEIQKQKLAEKFKELKESGKLESFIEKKRRRNAAKDHRFMPYRRP 294          
BLAST of Ggra8173.t1 vs. uniprot
Match: ribosomal RNA processing protein 36 homolog isoform X1 n=2 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F089CD (ribosomal RNA processing protein 36 homolog isoform X1 n=2 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F089CD)

HSP 1 Score: 99.4 bits (246), Expect = 1.280e-21
Identity = 81/222 (36.49%), Postives = 118/222 (53.15%), Query Frame = 0
Query:    1 MEEPTLGEVLHKRERVASAAH--AALQKFKRNRLEIAPKSLGGRGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFVRSIRNSEKKAFEDRVKKNPEDVEASHELKSMAQ----DEVRRNAFLRRRNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRR 216
            + E T  E+   +ERV +  +  A L K K    E   K    R  K+RPRE+SS++PV   RE  + ++   Q+      DPRF++  G   ++   + Y F++ I+  EKK  E +++K  +      ELK++ Q    DE  +    + R     +K+  K  VK GK PYFLK+ D + LE+  R+  LKKKG L KY+ K+RKR A KDKK LP RR
Sbjct:   47 LSEVTFEELQKLKERVGTKVYKEAILGKNKTTVAEARKKKFK-RDNKNRPREMSSKIPVSRYRE-IIPVKKQVQR------DPRFDDLSGQYKEEVFNKRYDFLKDIKMGEKKLVEKKLRKT-KSTTRKEELKALMQRMKDDERSQKQREQIRAREMEHKQKIKGYVKEGKNPYFLKKSDKKKLELAERYNNLKKKGQLDKYLAKKRKRNAHKDKKHLPTRR 259          
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A830BE02 (rRNA biogenesis protein RRP36 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BE02_9LAMI)

HSP 1 Score: 98.2 bits (243), Expect = 2.220e-21
Identity = 72/181 (39.78%), Postives = 113/181 (62.43%), Query Frame = 0
Query:   42 RGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFV-RSIRNSEKKAFEDRVKKNPEDVEASHELKSMAQ--DEVRRNAFLRR--RNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRP 217
            R  K+RP EISS+ PV   RE    IQ    ++ VR  DPRFE  CG L     ++ Y F+  +   +EK+  + ++KK   D EA +ELK      D+  ++A ++R  ++IL+ +KK E+EA K+GKQPY+LK+ D+R  ++  ++ ELK+ G L+ +I+K+RK+ A+KD + +P RRP
Sbjct:   67 RANKNRPMEISSKKPVSRFRE---VIQ--VPKKVVR--DPRFESLCGTLNVDGFKQRYNFIYENALPAEKEELKKQMKKT-NDPEAVNELKGRVALIDKEIKSAVIKRTEKDILAEHKKKEREAAKKGKQPYYLKKSDLRKQKLIEKYNELKESGKLESFIEKKRKKNAAKDHRYIPYRRP 239          
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A2B4RGF2 (rRNA biogenesis protein RRP36 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RGF2_STYPI)

HSP 1 Score: 97.8 bits (242), Expect = 3.880e-21
Identity = 63/178 (35.39%), Postives = 108/178 (60.67%), Query Frame = 0
Query:   42 RGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFVRSIRNSEKKAFEDRVKKNPED---VEASHELKSMAQDEVRRNAFLRRRNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRR 216
            R  K+RPRE+SS+ PVP  R+  + ++    ++  R  DPRF+E  G    +  ++ Y+F+  ++ +EKK  +  V+K  +    ++    LK M Q E  + A  ++R++    KK E E VK+GK PY+LK+ D + LE+  +F++LK  G L++Y++KR K+  SK++K +P+RR
Sbjct:   79 RENKNRPRELSSKKPVPRLRQ-VIPVK----KKMAR--DPRFDELSGTFNQEMFDKAYSFLDDVKANEKKKLQKEVQKTKQPERKLQLESLLKRMDQQEATKKAAAQKRDVERKRKKAELELVKQGKTPYYLKKSDKKKLELAEKFKKLKSSGKLEQYLKKRGKKNTSKERKKMPHRR 249          
BLAST of Ggra8173.t1 vs. uniprot
Match: A0A6I9SQ22 (rRNA biogenesis protein RRP36 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SQ22_SESIN)

HSP 1 Score: 95.5 bits (236), Expect = 2.470e-20
Identity = 72/183 (39.34%), Postives = 118/183 (64.48%), Query Frame = 0
Query:   40 GGRGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFV-RSIRNSEKKAFEDRVKKNPEDVEASHELK-SMAQ-DEVRRNAFLRR--RNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRP 217
            G R  K+RP E+SS+ PV   RE    IQ    ++ VR  DPRFE  CG+L     ++ Y F+  +I  +EK+  + ++KK  +D EA  ELK  MA+ D+  ++A  +R  ++IL+ +KK E+EA K+GKQPY+LK+ ++R  ++  +++ELK  G L+ +I+++R++ A+KD + +P RRP
Sbjct:   65 GSRANKNRPMEMSSKKPVSRFRE---VIQ--VPKKVVR--DPRFESLCGNLDVDGFKKRYNFLYENILPAEKEELKKQMKK-AKDPEAIKELKYRMARVDKELKSAVTKRTEKDILAEHKKKEREAAKKGKQPYYLKKSELRKQKLVEKYKELKDSGKLEAFIERKRRKNAAKDHRYMPYRRP 239          
BLAST of Ggra8173.t1 vs. uniprot
Match: S8C150 (rRNA biogenesis protein RRP36 n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C150_9LAMI)

HSP 1 Score: 94.7 bits (234), Expect = 4.550e-20
Identity = 69/181 (38.12%), Postives = 109/181 (60.22%), Query Frame = 0
Query:   42 RGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFV-RSIRNSEKKAFEDRVK--KNPEDVEASHELKSMAQDEVRRNAFLRR--RNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPNRRP 217
            R  K+RP EISS+ PV   RE     +N ++       DPRFE  CG L     ++ Y F+  +   SEKK  +  ++  KNPE V+   +  +    EV+ +A  +R  ++ILS +KK E+EA KRGKQP++LK+ ++R  ++  ++ ELK+ G L+ +++KRR++ ASK+ + LP RRP
Sbjct:   69 RANKNRPMEISSKKPVSRFREVIQVPKNVSR-------DPRFESLCGKLDVDGFKKRYNFIYENTLPSEKKELKKLMRNAKNPEVVDELKDKMAKIDKEVK-SALPKRTEKDILSEHKKKEREAAKRGKQPFYLKKSELRKQKLIEKYNELKESGKLEAFMEKRRRKNASKEHRYLPYRRP 241          
BLAST of Ggra8173.t1 vs. uniprot
Match: ribosomal RNA processing protein 36 homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C484 (ribosomal RNA processing protein 36 homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C484)

HSP 1 Score: 94.4 bits (233), Expect = 6.240e-20
Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 0
Query:   42 RGKKSRPREISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYAFVRSIRNSEKKAFEDRVKKNPE---DVEASHELKSMAQDEVRRNAFLRRRNILSTYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKRRKRLASKDKKLLPN 214
            R  K+RPRE SS+ PV          +N  + +     DPRF++  GD  ++  E+NY F+  I+  EK   E  +K+  +    ++    L  + Q E  +N     + +   Y + EKE VK+GK+P+FLK+ D R LE+  +F+ LK+ G +  Y+ KRRK+ A KD+K +P+
Sbjct:   67 RANKNRPREESSKKPVSR-------FRNVVEVKKQMARDPRFDDLSGDFREETFEKNYQFLSDIKEREKGELEKSMKETNDPQKQLKIQRYLYKLEQQERAKNKKNSAKELEKKYMRKEKELVKQGKKPFFLKKSDRRKLELAEKFKALKRSGKVDNYLAKRRKKNAQKDRKKMPS 235          
The following BLAST results are available for this feature:
BLAST of Ggra8173.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5X54.160e-8362.44rRNA biogenesis protein RRP36 n=1 Tax=Gracilariops... [more]
A0A022QQH03.040e-2342.33rRNA biogenesis protein RRP36 n=1 Tax=Erythranthe ... [more]
ribosomal RNA processing protein 36 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04755D5.920e-2335.75ribosomal RNA processing protein 36 homolog n=1 Ta... [more]
A0A4D9A4T73.250e-2235.65rRNA biogenesis protein RRP36 n=2 Tax=Salvia splen... [more]
ribosomal RNA processing protein 36 homolog isoform X1 n=2 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F089CD1.280e-2136.49ribosomal RNA processing protein 36 homolog isofor... [more]
A0A830BE022.220e-2139.78rRNA biogenesis protein RRP36 n=1 Tax=Phtheirosper... [more]
A0A2B4RGF23.880e-2135.39rRNA biogenesis protein RRP36 n=2 Tax=Pocilloporid... [more]
A0A6I9SQ222.470e-2039.34rRNA biogenesis protein RRP36 n=1 Tax=Sesamum indi... [more]
S8C1504.550e-2038.12rRNA biogenesis protein RRP36 n=1 Tax=Genlisea aur... [more]
ribosomal RNA processing protein 36 homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C4846.240e-2034.09ribosomal RNA processing protein 36 homolog n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..225
IPR009292rRNA biogenesis protein RRP36PFAMPF06102RRP36coord: 42..210
e-value: 3.9E-35
score: 121.3
IPR009292rRNA biogenesis protein RRP36PANTHERPTHR21738UNCHARACTERIZEDcoord: 12..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:37984..38661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8173.t1Ggra8173.t1Gracilaria gracilis GNS1m malemRNAtig00000872_pilon 37984..38661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8173.t1 ID=Ggra8173.t1|Name=Ggra8173.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MEEPTLGEVLHKRERVASAAHAALQKFKRNRLEIAPKSLGGRGKKSRPRE
ISSRMPVPVGRERCLGIQNGAQQRSVRNFDPRFEEHCGDLLDQHVERNYA
FVRSIRNSEKKAFEDRVKKNPEDVEASHELKSMAQDEVRRNAFLRRRNIL
STYKKDEKEAVKRGKQPYFLKEKDVRNLEMKARFEELKKKGGLKKYIQKR
RKRLASKDKKLLPNRRPFSRPGSES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009292RRP36