Ggra8097.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8097.t1
Unique NameGgra8097.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Homology
BLAST of Ggra8097.t1 vs. uniprot
Match: A0A2V3IHK0 (PS II complex 12 kDa extrinsic protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHK0_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 4.860e-72
Identity = 109/149 (73.15%), Postives = 126/149 (84.56%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSRAALPAVCMSASPEPKVTRRQLLTRALAAAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAF+TGPALPTSR SR A   V M+ S   + +RR+LLT+ALAAAA++SLP  + AEREYPNVGFLGG D IDINNANVRAYQK +GFYP LAGLIV+NGPYSSVD+LYKLPG+TD MK +LDE+KEKL+AL+P PEY IDK NNGLYR
Sbjct:    1 MAFVTGPALPTSRASRVAARPVSMTTSRPAQFSRRELLTKALAAAAIVSLPRQAFAEREYPNVGFLGGGDQIDINNANVRAYQKFRGFYPTLAGLIVTNGPYSSVDELYKLPGLTDAMKNSLDEYKEKLVALEPTPEYEIDKINNGLYR 149          
BLAST of Ggra8097.t1 vs. uniprot
Match: R7Q963 (PS II complex 12 kDa extrinsic protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q963_CHOCR)

HSP 1 Score: 177 bits (448), Expect = 2.360e-54
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSRAALPAVCMSASP--EPKVTRRQLLTRALAAAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAF+TGPALP+ R +RA        A+   E  V+RR ++   +AA    +LP  + AEREYPNVGFLGGSD ID+NNANVRAY K +GFYP LAGLIV+NGPY SVD+L+ LP +T  MK TL+++K+ L AL+P PEY +DKFNNGLYR
Sbjct:    1 MAFVTGPALPSLRAARATSTCTVRMAADAAEEPVSRRAIIAGVVAAXXXAALPKVANAEREYPNVGFLGGSDVIDVNNANVRAYVKFQGFYPTLAGLIVANGPYKSVDELFALPDLTPQMKTTLEKYKDNLTALEPTPEYELDKFNNGLYR 151          
BLAST of Ggra8097.t1 vs. uniprot
Match: photosystem II 12 kDa extrinsic protein, chloroplastic-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC914 (photosystem II 12 kDa extrinsic protein, chloroplastic-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC914)

HSP 1 Score: 167 bits (423), Expect = 1.540e-50
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSRAALPAVC---MSASPE-PKVTRRQLLTRALAA-AALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAF+ G +LP SR      PAVC   M+ + + PKV+RR  L  A++A AA + +P S+ AE EY NVG+LGG D ID+NNANVRAY K  GFYP LAGLIVSNGPY SVD+L KLPG+T  MK TL+++K  L+AL+PAPEY IDK NNGLY+
Sbjct:    1 MAFVPGASLPCSRTE--CRPAVCGLRMNVNEDVPKVSRRAALAAAVSAVAAGLVVPLSAQAEIEYANVGYLGGGDQIDVNNANVRAYLKYPGFYPTLAGLIVSNGPYKSVDELSKLPGLTSAMKETLEKYKNNLVALEPAPEYEIDKLNNGLYK 152          
BLAST of Ggra8097.t1 vs. uniprot
Match: A0A1X6NM48 (PS II complex 12 kDa extrinsic protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM48_PORUM)

HSP 1 Score: 155 bits (391), Expect = 1.020e-45
Identity = 83/151 (54.97%), Postives = 108/151 (71.52%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSRAALPAVCMSASPEPKVTRRQLLTRALAAAALISLPSS--SLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAF+ G A P    + AA  ++CMSA  +P V+RR  LT A AAAAL ++  S  ++AE EY NV FLGGSD IDINNANVRAY K  G YP +AG++ +NGPY SV D++K+PG+T+    TL ++++KL+AL P PEY +DK NNGLYR
Sbjct:    1 MAFV-GAAAPLRVAAPAARSSICMSAEDKPAVSRRAALTGA-AAAALAAMAGSLPAMAETEYANVPFLGGSDIIDINNANVRAYAKYPGMYPTVAGILATNGPYESVSDVFKIPGLTERQVNTLKKYQDKLVALTPTPEYELDKVNNGLYR 149          
BLAST of Ggra8097.t1 vs. uniprot
Match: PSBU (Photosystem II 12 kDa extrinsic protein, chloroplastic n=1 Tax=Griffithsia japonica TaxID=83288 RepID=PSBU_GRIJA)

HSP 1 Score: 153 bits (387), Expect = 4.660e-45
Identity = 82/153 (53.59%), Postives = 101/153 (66.01%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSR--AALPAVCMSASPEPKVTRRQLLTRALAAAALISLPSSS--LAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAFI+GPALPT+R +R  AA P    S    P V+RR LL+             ++   A+REY NVGFLGG D ID+NNANVR Y +L G YP LAGLIV+NGPY SV DLY +PG+ D     L ++++  +AL+P PEY IDKFNNGLYR
Sbjct:    1 MAFISGPALPTARVNRTVAATPVRMASGEDTPVVSRRALLSXXXXXXXXXXXXXAAPAKADREYGNVGFLGGGDKIDVNNANVRVYGRLPGMYPTLAGLIVANGPYKSVGDLYNIPGLDDKQTGLLKKYEDSFVALEPRPEYEIDKFNNGLYR 153          
BLAST of Ggra8097.t1 vs. uniprot
Match: A0A7S1EUZ7 (PS II complex 12 kDa extrinsic protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUZ7_9RHOD)

HSP 1 Score: 148 bits (373), Expect = 6.030e-43
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 0
Query:    1 MAFITGPALPTSRPSRAALPAVC----MSASPEP-KVTRRQLLTRALAAA-ALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            MAFI+G  L T     +A PA C    MSA  E   V+RRQLL  ++AAA A ++   ++LA+REY NVGFLGG D +D+NNANVRAY +  G YPN+AG+I  NGPY SV DLYKL  + D  K  L +++ KL+AL P PEY+ID+FNNGLYR
Sbjct:    2 MAFISGAGLVTKS---SAAPAKCCAVRMSAESEDGAVSRRQLLAGSVAAALAAVAAVPAALADREYENVGFLGGGDQVDVNNANVRAYIQFPGMYPNIAGVICKNGPYDSVADLYKLD-LNDKQKEVLKKYESKLVALPPRPEYMIDRFNNGLYR 152          
BLAST of Ggra8097.t1 vs. uniprot
Match: D4NY63 (PS II complex 12 kDa extrinsic protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D4NY63_GALSU)

HSP 1 Score: 136 bits (342), Expect = 5.810e-38
Identity = 67/141 (47.52%), Postives = 94/141 (66.67%), Query Frame = 0
Query:   11 TSRPSRAALPAVCMSASPEPKVTRRQLLTRALA--AAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            TS+ S+  L   C  +     V+RR+ L  +L   ++ +     ++ A REY  VG+LGG D +DINNAN+RAY K  GFYP LA LIV NGPY SV+DLY + G+T+  +  + +++++ +ALDPAPEY +DKFNNGLYR
Sbjct:   36 TSKSSK--LLCTCSQSGSGNAVSRRKFLFSSLGVISSTVFLFSQAASASREYAGVGYLGGGDKVDINNANIRAYTKFPGFYPKLASLIVKNGPYKSVNDLYNIKGLTEDQRELIKKYEDRFVALDPAPEYEVDKFNNGLYR 174          
BLAST of Ggra8097.t1 vs. uniprot
Match: PSBU (Photosystem II 12 kDa extrinsic protein, chloroplastic n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=PSBU_NEOYE)

HSP 1 Score: 135 bits (340), Expect = 6.100e-38
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 0
Query:   44 AAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            AA   SLP+  LAE EY NV FLGGS  IDINNANVRAY K  G YP +AGLI +NGP+ +V DLYK+PG+TD   ATL ++++KL+AL P PEY +DK NNGLYR
Sbjct:   49 AAVAGSLPA--LAETEYANVPFLGGSVIIDINNANVRAYAKYPGMYPTVAGLIATNGPFETVSDLYKIPGLTDLQIATLKKYEDKLVALTPTPEYELDKVNNGLYR 152          
BLAST of Ggra8097.t1 vs. uniprot
Match: D7G9E0 (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.070e-37
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 0
Query:   18 ALPAVCMSA-----SPEPKVTRRQLLTRALAAAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            ALPA  MSA     S E   +R   L  A  AAAL+ L + +LAE + P V FLGG D ID+NNANVRAY KL+G YP+ AG IVSNGPYSSV ++Y + G+++  KA + +H+ + I +DP   Y ID+ NNGLYR
Sbjct:   22 ALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158          
BLAST of Ggra8097.t1 vs. uniprot
Match: A0A5J4YLQ6 (PS II complex 12 kDa extrinsic protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLQ6_PORPP)

HSP 1 Score: 132 bits (333), Expect = 6.600e-37
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   31 KVTRRQLLTRALAAAALISLPSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNGPYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR 149
            +V+RRQ+L+ A AA A   +   + AE EY  V +LGGSD ID+NNAN+RAY K  G YPN+A  IV NGP+ SVDD+ K+  +T T K+ ++++K  LIAL   PEYVIDK NNGLYR
Sbjct:   32 QVSRRQMLSVAAAAVAAFGVARGANAEMEYEGVMYLGGSDKIDVNNANIRAYTKYPGMYPNIAREIVKNGPFESVDDVLKIETLTATQKSVVEKYKNNLIALPSRPEYVIDKLNNGLYR 150          
The following BLAST results are available for this feature:
BLAST of Ggra8097.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHK04.860e-7273.15PS II complex 12 kDa extrinsic protein n=1 Tax=Gra... [more]
R7Q9632.360e-5458.94PS II complex 12 kDa extrinsic protein n=1 Tax=Cho... [more]
photosystem II 12 kDa extrinsic protein, chloroplastic-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC9141.540e-5059.74photosystem II 12 kDa extrinsic protein, chloropla... [more]
A0A1X6NM481.020e-4554.97PS II complex 12 kDa extrinsic protein n=1 Tax=Por... [more]
PSBU4.660e-4553.59Photosystem II 12 kDa extrinsic protein, chloropla... [more]
A0A7S1EUZ76.030e-4354.84PS II complex 12 kDa extrinsic protein n=1 Tax=Tim... [more]
D4NY635.810e-3847.52PS II complex 12 kDa extrinsic protein n=1 Tax=Gal... [more]
PSBU6.100e-3863.21Photosystem II 12 kDa extrinsic protein, chloropla... [more]
D7G9E02.070e-3751.82PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A5J4YLQ66.600e-3754.62PS II complex 12 kDa extrinsic protein n=1 Tax=Por... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010527Photosystem II PsbU, oxygen evolving complexPFAMPF06514PsbUcoord: 70..148
e-value: 6.0E-26
score: 90.3
NoneNo IPR availableGENE3D1.10.150.320Photosystem II 12 kDa extrinsic proteincoord: 63..140
e-value: 6.5E-24
score: 85.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..149
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 60..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000869_piloncontigtig00000869_pilon:8850..9299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8097.t1Ggra8097.t1Gracilaria gracilis GNS1m malemRNAtig00000869_pilon 8850..9299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8097.t1 ID=Ggra8097.t1|Name=Ggra8097.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MAFITGPALPTSRPSRAALPAVCMSASPEPKVTRRQLLTRALAAAALISL
PSSSLAEREYPNVGFLGGSDTIDINNANVRAYQKLKGFYPNLAGLIVSNG
PYSSVDDLYKLPGITDTMKATLDEHKEKLIALDPAPEYVIDKFNNGLYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010527PSII_PsbU