Ggra8087.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8087.t1
Unique NameGgra8087.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Homology
BLAST of Ggra8087.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 417 bits (1071), Expect = 9.760e-139
Identity = 204/417 (48.92%), Postives = 291/417 (69.78%), Query Frame = 0
Query:   46 MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSIHVFRSPNTTAFSAFVTSMHECT-NKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAVPSEYEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQTAADLLSCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKMLFQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIAYLVGGSLFLAMVL 461
            M E PISF NDR + NNG+DG + E++ + Q +L W CSS+ +F+  NT+ F+AF+  MHECT N+STG  + S  C CDIGIGGWFQ   R+G VDFLPPF +DRY   +HVS    SG++ FF++TFD  +WI+I++L  +F+ LK+LD RFAV   Y PL    SR++R  H+L K    +RLRK  QS++ R+++  D  VVD+G +TRQWFLNL++ + ALFLVLS+EASMTASLVQE + + +++  D  SC+I PS+VC LRGGALE +W  +IA   CH  NP  Y ++Y+ ++  +  G+CK++I LES IT+ IR + CG  V++ EP++ SGLS ++PKGSNLTE MS+AT+ LL +Q ++ L  +    P+C  +V +TL+F KL+ FF++A+ V  ++   M+L
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTG--VSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGV-SRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLL 414          
BLAST of Ggra8087.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 400 bits (1028), Expect = 1.210e-131
Identity = 195/421 (46.32%), Postives = 272/421 (64.61%), Query Frame = 0
Query:   41 LRCCLMEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSIHVFRSPNTTAFSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAVPSEYEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQTAADLLSCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKMLFQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIAYLVGGSLFLAMVL 461
            LRCC+++EPPI+F +DR Y N G+ G+I ++L + Q YLNW+CSS+  +     T+F+ FV  M +C+    G + + P C+CDIGI GWFQ   RF  VDFLPPF  D Y    H+S + +SG+  FFI TFD  AW+SI  L ++FS +K  DR+F     +E L ET  R++R+ H L K    +R R+ +QST  RM++L D  VV++    RQW LN +++V+ LFL+LSYEASMTASLVQE+V   FQ+  D  +CRI P+EVC+  GGALE +W  SIA+E CH+Q  P + +SY  LF AV+   CKY ++LES   +AI  +YCG  +   +PI++ GL+ +LPK SNLT+ MS ATL++     T  + +YF ++P+C     TTL+F KLR FF IA   G  L L  ++
Sbjct:   37 LRCCILDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCSEN--GAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLRII 455          
BLAST of Ggra8087.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 374 bits (959), Expect = 2.120e-120
Identity = 194/454 (42.73%), Postives = 278/454 (61.23%), Query Frame = 0
Query:   30 GTRNVLSSQPPLRCCLMEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSIHVFRSPNTTAFSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAVPSEYEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQTAADLLSCRIDPSEVCILRGGALETYWEKSIAVEE-CHEQNPPNYFNSYKMLFQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIAYLVGGSLFLAMVLIPQK------NPGDGDEGRNR 476
              R VL+    LRCC++ EPPI+F NDRNY N G+DG+I  +L Q Q +LNWTCSS+  +   +TT F+ F+T M  C+    G I D P C CDIGIGGWF  + RFG VDFLPPF YD Y    H+S++ +SG+  FFI TFD   W+ I  L ++F+ +++    F   + Y+PL  T + ++R  H+L      +RLR  IQ    RM+++ +       N T  W L  ++ +  LFL+L+YEASMTAS+VQE+V ++FQ+  D  +CRIDP +VC+ RGG+ +TYW + +A E  CH+   P+   SY+ +FQ VE   C++ I+LES + S I ++YCG  +  G PI+  GL+ +LPK S  TE MS ATL++    T  SL  +++    C AE+ T+L F+KL+ FF+IA+  G  LFL +V+I         +  D DE R+R
Sbjct:   27 NARGVLAGAK-LRCCIVYEPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCSEN--GTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSA-FGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTG-FLFLTVVVIKWTLNRIGPSTDDQDEYRSR 475          
BLAST of Ggra8087.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 316 bits (810), Expect = 4.110e-99
Identity = 174/415 (41.93%), Postives = 248/415 (59.76%), Query Frame = 0
Query:   41 LRCCLMEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSIHVFRSPNTTAFSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFA-VPSEYEPLPETYSRLKRWG---HYL-TKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQTAADLLSCRIDPSEVCILRGGALETYWEKSIAVEECH-EQNPPNYFN-SYKMLFQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIA 448
            LRCC++ EPPI + +   Y NNG++G+I ++L + QA L+W CS    +   + T+F+ F+  M  CT    G I D P C C+IGIGGWF +A R   VD LPPF YD      HVS    SG   FF+ TFD  +W+ + ++ ++F+  K LD RFA +PS  EP     +    WG   H+L T  N   RL   I+ST +R+++ SD  +V + +    + LNLI+ +  L +VLSYEASMTA+LVQE+V + +Q+  DL +CRI P +VC+  G A+ T+W  +IA  +CH E    NYF  S++    AV+ G CK+ +VL+S I  AI  +YCG  +  GEPI+  GLS +LPK SNLT+ M  ATL+L    +  SL +YF  + +C     + L+FEKL+  F+ A
Sbjct:   35 LRCCVIHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCTQN--GAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEP-----NAANSWGRCLHFLRTNWN---RLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra8087.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 164 bits (416), Expect = 1.760e-43
Identity = 82/186 (44.09%), Postives = 120/186 (64.52%), Query Frame = 0
Query:   97 FSAFVTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAVPSE-YEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMT 281
            F++ V  M  C  +  G + + PDC+CD+ +GGW ++ +R G VDFLPPF  D     +HV E +++    FF+  F    W  ++ L V+F+FLK+LDRRF  P + Y PLP +  RL+R  HYL KS +P+RLRK +QSTL RM+  S+   V    ++RQW LNL++A  +LF++L+YE+SMT
Sbjct:   93 FNSIVEKMDRCVTEE-GTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
BLAST of Ggra8087.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 147 bits (370), Expect = 2.460e-38
Identity = 74/158 (46.84%), Postives = 101/158 (63.92%), Query Frame = 0
Query:  125 IGIGGWFQTASRFGLVDFLPPFAYDRYVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAVPSE-YEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMT 281
            + +GGWF+   RF  VDFLPPFA D      H    + +    FFI  F    W  I+ L  +F+FLK+LDRRF  P E Y+PLP T SR++R  HYL KS +P+RLRK +QSTL RM+       ++   ++RQW LNL++A+ +LFL+L+YEA+MT
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYEAAMT 158          
BLAST of Ggra8087.t1 vs. uniprot
Match: R7Q540 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 121 bits (304), Expect = 2.480e-28
Identity = 65/187 (34.76%), Postives = 108/187 (57.75%), Query Frame = 0
Query:  281 TASLVQESVETKFQTAADLLSCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKMLFQAVEEGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTETMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIAYLVGGSLFLAMVLIPQKNP 467
            +A+LVQ+++ ++++   DL +C + PS+VC+ +GGA++ +W  +I    CH++ P  YF+ YK     +   +C Y + L S+     ++ YCG  ++ GEP   +GLS +LP+GSN+T  +S  T+ L       +  RY     +C  E N TL+ EKLR FF +A+     +FL M+L  Q+ P
Sbjct:   10 SAALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGKNACHKEKPV-YFSRYKDGIDNLLTKKCLYMLTLSSSGNELTQREYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKC-PEQNLTLNVEKLRFFFYMAFSACLFIFLEMILDSQQPP 194          
BLAST of Ggra8087.t1 vs. uniprot
Match: R7Q656 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q656_CHOCR)

HSP 1 Score: 94.0 bits (232), Expect = 9.180e-20
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 0
Query:  193 ILDRRFAVPSE-YEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVVDHGNTTRQWFLNLILAVTALFLVLSYEASMT 281
            +LDRRF  P E Y+PLP T SR++R  HYL KS +P+RLRK +QST+ RM+       ++   ++RQW LNL++A+ +LFL+L+YE++MT
Sbjct:    1 MLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTMSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYESAMT 90          
The following BLAST results are available for this feature:
BLAST of Ggra8087.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IMD59.760e-13948.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME41.210e-13146.32Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD42.120e-12042.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK74.110e-9941.93Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q0P81.760e-4344.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QE122.460e-3846.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q5402.480e-2834.76Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q6569.180e-2050.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 290..385
e-value: 7.3E-6
score: 27.9
NoneNo IPR availableGENE3D3.40.190.10coord: 386..412
e-value: 7.3E-6
score: 27.9
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 109..459
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 444..462
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 463..510
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 277..443
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 195..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 123..419
NoneNo IPR availableTMHMMTMhelixcoord: 175..194
NoneNo IPR availableTMHMMTMhelixcoord: 444..463

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000867_piloncontigtig00000867_pilon:682630..684519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8087.t1Ggra8087.t1Gracilaria gracilis GNS1m malemRNAtig00000867_pilon 682630..684519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8087.t1 ID=Ggra8087.t1|Name=Ggra8087.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MSDVIPQFVKHTELLFLLFASLTSLHTALGTRNVLSSQPPLRCCLMEEPP
ISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSIHVFRSPNTTAFSAF
VTSMHECTNKSTGQIIDSPDCSCDIGIGGWFQTASRFGLVDFLPPFAYDR
YVAFSHVSEATLSGKVWFFIQTFDGWAWISIMSLFVMFSFLKILDRRFAV
PSEYEPLPETYSRLKRWGHYLTKSNLPFRLRKGIQSTLMRMLMLSDETVV
DHGNTTRQWFLNLILAVTALFLVLSYEASMTASLVQESVETKFQTAADLL
SCRIDPSEVCILRGGALETYWEKSIAVEECHEQNPPNYFNSYKMLFQAVE
EGQCKYAIVLESAITSAIRQRYCGDFVIVGEPIWNSGLSTLLPKGSNLTE
TMSRATLELLGNQTTTSLIRYFNNLPQCRAEVNTTLSFEKLRRFFLIAYL
VGGSLFLAMVLIPQKNPGDGDEGRNRAAAVDGETFEAVMKTMTRPESFSS
TGGSHGDGAV*
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