Ggra8032.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8032.t1
Unique NameGgra8032.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Homology
BLAST of Ggra8032.t1 vs. uniprot
Match: A0A2V3IV40 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV40_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 2.380e-60
Identity = 105/230 (45.65%), Postives = 154/230 (66.96%), Query Frame = 0
Query:   11 LYIGNVECNLVHKRGTLETLLQYGSAQSPQVFLLEINDNEELMQTMLNTSESNIITSHQISTQKISDNKYNISATLFFDFLPGEANYTITVSTRTMKGDSKLYTLKQSHSVYGMVFFDTMNGKIQTISGDFGVGFNLTSFVGLETDPFRVKSLVHIPNEIDLEPTVEVIGQKNESNILEEDDVIVDEEGLLVMPQPFRTGSAMVIIKSENLKKDGKSFETAIAITIPDTP 240
            L +  VE +L+H +G+ ETLLQYGSA+S Q FL E+ND  +L+ T L TS  +IITS+ I   +ISD  +NI+ATLFF++LPGEA Y I   T +  G + +YT++++HSVYGM F+D  +G +  ISGDFG G +L S   L  +P R+K + ++P E+    T  V+  + +  +LE+DDV +D +GL +  +P R GSA++ I+S NL  DG+SFETA+ + + D P
Sbjct:   12 LLLSVVESSLIHTQGSSETLLQYGSAESTQFFLFELNDTAQLVNTTLETSNHSIITSYVIKVDQISDTLFNITATLFFEYLPGEAVYQIAARTES-PGGASIYTMERNHSVYGMAFYDDSHGTMALISGDFGYGLSLISS-SLGEEPVRLKYIANVPREVAFNLTANVLFNRVQGAMLEDDDVSIDGDGLYIKLRPHRIGSALITIESSNLVVDGESFETAVIVRVRDLP 239          
BLAST of Ggra8032.t1 vs. uniprot
Match: A0A2V3ILQ4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILQ4_9FLOR)

HSP 1 Score: 208 bits (530), Expect = 2.180e-59
Identity = 134/407 (32.92%), Postives = 212/407 (52.09%), Query Frame = 0
Query:   23 KRGTLETLLQYGSAQSPQVFLLEINDNEELMQTMLNTSESNIITSHQISTQKISDNKYNISATLFFDFLPGEANYTITVSTRTMKGDSKLYTLKQSHSVYGMVFFDTMNGKIQTISGDFGVGFNLTSFVGLETDPFRVKSLVHIPNEIDLEPTVEVIGQKNE--SNILEEDDVIVDEEGLLVMPQPFRTGSAMVIIKSENLKKDGKSFETAIAITIPDTPVPPAVVDQKGVQRVNIGPNGTIDVMLDMFNVRTDSNLTLLLGDWELPAIFEESVTGKDEQKILFRGAANP-GKYDIQVRIESATGREDVISLYDTFLLVGREGEKEKSGLS-VVGIL---------LIVFGSITTVVVALILRIIWVNHRSEAQEREMRERCVCPSCEEKDVVHIVRDVYGRGSEQV 416
            + G+ E+LLQYGSAQS + +LL ++  + + +  L+T +  ++TSH++S  ++S   YNIS  LFFD +PGE  Y IT  TR   G      L  SHSV+G+VF++ + G+ + +SGD   G + TSF   E+      ++ H P  + LE    +  Q     S +L E D+ V  +G+ V   P+RTG+ +V ++   L+ DG+S ET + I++P+TP+PP VV QKG + V I  NGT ++ ++MFN  +   +  +LG  +L AI + S      Q + F G+    G + +++R++      D + LY+  + + + G  +  G S V GI                     V  ++ + W   RSE  E E          E+     I RDVYGRGS +V
Sbjct:   25 QSGSHESLLQYGSAQSVKTYLLNVSPEQTVTEVSLSTQDGKVLTSHEVSFSQVSQGLYNISVNLFFDGIPGEVQYRITAQTRASDGSEHREELSASHSVFGVVFYEEVQGERRLVSGDDSDGIHYTSFTTPESPARTFSAISHTPAGVILEGKSSIRAQTGSGASPLLLESDIDVSGDGMSVDVHPYRTGAVIVTVEFPELQVDGESHETVVYISVPNTPLPPVVVTQKGEKVVQIATNGTAELTVEMFNAESFPTMEAVLGSNKLEAIRDGSDIADLNQNVRFVGSVREEGTFPLRIRVKQEV-IVDAVMLYEPSVALTKAGTNQVIGGSPVAGIASNXXXXXXXXXXXXXXXXXXVGGVMTVFWSRRRSE--EAEANFDAAYSPAEDVGGFGIARDVYGRGSVEV 428          
The following BLAST results are available for this feature:
BLAST of Ggra8032.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IV402.380e-6045.65Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3ILQ42.180e-5932.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 376..416
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..348
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 349..375
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 354..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000261_piloncontigtig00000261_pilon:11035..12285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8032.t1Ggra8032.t1Gracilaria gracilis GNS1m malemRNAtig00000261_pilon 11035..12285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8032.t1 ID=Ggra8032.t1|Name=Ggra8032.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MLPACLLIIVLYIGNVECNLVHKRGTLETLLQYGSAQSPQVFLLEINDNE
ELMQTMLNTSESNIITSHQISTQKISDNKYNISATLFFDFLPGEANYTIT
VSTRTMKGDSKLYTLKQSHSVYGMVFFDTMNGKIQTISGDFGVGFNLTSF
VGLETDPFRVKSLVHIPNEIDLEPTVEVIGQKNESNILEEDDVIVDEEGL
LVMPQPFRTGSAMVIIKSENLKKDGKSFETAIAITIPDTPVPPAVVDQKG
VQRVNIGPNGTIDVMLDMFNVRTDSNLTLLLGDWELPAIFEESVTGKDEQ
KILFRGAANPGKYDIQVRIESATGREDVISLYDTFLLVGREGEKEKSGLS
VVGILLIVFGSITTVVVALILRIIWVNHRSEAQEREMRERCVCPSCEEKD
VVHIVRDVYGRGSEQV*
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