Ggra8001.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8001.t1
Unique NameGgra8001.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Homology
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A2V3IR95 (Rubredoxin-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR95_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.620e-50
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 0
Query:   18 AESSRYWQGEWICVDCGYTYKPGRRVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            A++SRYWQGEWICVDCG+TYKP R+VKFEDLPASWKCPQCNAPKRRFAKKAGD IAET+GTSNLPI++FS  GL+AT+ FGIWA+ NL
Sbjct:   55 AQNSRYWQGEWICVDCGFTYKPTRKVKFEDLPASWKCPQCNAPKRRFAKKAGDLIAETSGTSNLPILLFSAFGLLATIAFGIWASQNL 142          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A5J4YRV6 (Rubredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRV6_PORPP)

HSP 1 Score: 129 bits (323), Expect = 2.190e-36
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   11 REDAKATAESSRYWQGEWICVDCGYTYKPGRRVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            R   +  A     W+GEW+CVDCGY YK G+ V FE LP  W+CPQC APKRRFAKKAGD + E   TSN PIVI S+VGLV  ++F +WA NNL
Sbjct:   35 RTTVRMAAGKEEIWKGEWLCVDCGYEYKRGQNVAFESLPDDWRCPQCRAPKRRFAKKAGDKVQEAGTTSNAPIVILSLVGLVGVLVFAVWAVNNL 129          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A1X6NYE9 (Rubredoxin-like domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYE9_PORUM)

HSP 1 Score: 122 bits (307), Expect = 4.030e-34
Identity = 53/85 (62.35%), Postives = 71/85 (83.53%), Query Frame = 0
Query:   23 YWQGEWICVDCGYTYK--PGRRVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            +++GE +CVDCGY +K  P R+V+FE+LP  WKCPQCNAPKRRFA+KAGD IA  +GTSN PI+IFS++GL+ T+ FG+WA ++L
Sbjct:   32 FFRGEHVCVDCGYVFKYSPKRKVQFEELPKDWKCPQCNAPKRRFARKAGDTIALDSGTSNAPILIFSILGLLGTLAFGVWAASSL 116          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A7S2PH64 (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH64_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.260e-27
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   14 AKATAESSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            A+  A+++ YW+GEW+C DCGY Y  G    + FE+    ++CPQC+ P+RR+AKK GD +  T    + PI+IFS  G++AT++FG+WA NNL
Sbjct:   57 AEEEAKAAMYWEGEWVCKDCGYIYNRGECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVIATIVFGVWAVNNL 150          
BLAST of Ggra8001.t1 vs. uniprot
Match: K0SZD0 (Rubredoxin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZD0_THAOC)

HSP 1 Score: 103 bits (258), Expect = 2.550e-26
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   14 AKATAESSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            A+  A+++ YWQGEW+C DCGY Y       + FE+  A ++CPQC+ P+RR+AKK GD +  T    + PI+IFS  GL AT+ FG+WA  NL
Sbjct:   52 AEEEAKAAMYWQGEWVCKDCGYIYNRAECANMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGLAATIAFGVWAVQNL 145          
BLAST of Ggra8001.t1 vs. uniprot
Match: B8BU96 (Rubredoxin-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU96_THAPS)

HSP 1 Score: 103 bits (256), Expect = 5.720e-26
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 0
Query:   11 REDAKATAESSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            +E+ +A A  ++YWQGEW+C DCGY Y       + FE+  A ++CPQC+ P+RR+AKK GD +  T    + PI++FS  GL+AT++FG+WA  NL
Sbjct:   55 KEEEEALA--AKYWQGEWVCKDCGYIYNRAECAGMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGLIATIVFGVWAVQNL 149          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A1Z5KJZ7 (Rubredoxin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJZ7_FISSO)

HSP 1 Score: 102 bits (254), Expect = 6.600e-26
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   20 SSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            +S+YWQGEW+C DCGY Y       + FE+    ++CPQC+ P+RR+AKK GD +  T    + PI++FS  G++AT+ FGIWA NNL
Sbjct:   42 NSQYWQGEWVCKDCGYIYNRAECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGVIATIAFGIWAVNNL 129          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A7S0AQK4 (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AQK4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.100e-25
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 0
Query:   14 AKATAESSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            A+  A+++++WQGEW+C DCGY Y       + FE+    ++CPQC+ P+RR+AKK GD +  T    + PI+IFS  G++AT++FGIWA  NL
Sbjct:   94 AEEEAKAAQFWQGEWVCKDCGYIYNRAECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDVVGTTLDGGDAPILIFSFGGVIATIIFGIWAVENL 187          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A6S9B882 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9B882_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.440e-25
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 0
Query:   20 SSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            ++++WQGEW+C DCGY Y+      + FE+  A ++CPQC+ P+RR+AKK GD +  T    + PI+IFS  G++AT+ FGIWA  NL
Sbjct:   64 AAKFWQGEWVCKDCGYIYQRAECAGMYFEEQGAGFRCPQCSGPRRRYAKKVGDVVGTTLDGGDAPILIFSFGGVIATIAFGIWAVENL 151          
BLAST of Ggra8001.t1 vs. uniprot
Match: A0A7S1VTP9 (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VTP9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.430e-25
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   14 AKATAESSRYWQGEWICVDCGYTYKPGR--RVKFEDLPASWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIWATNNL 105
            A    +  +YW+G+W+C DCGY Y       + FE+    ++CPQC+ P+RR+AKK GD +  T    + PI+IFS  G++AT++FGIWA NNL
Sbjct:   62 AAQAEKEDKYWEGDWVCKDCGYIYNRAECAGMFFEEQGPGFRCPQCSGPRRRYAKKVGDVVGTTLDGGDAPILIFSFGGVIATIIFGIWAVNNL 155          
The following BLAST results are available for this feature:
BLAST of Ggra8001.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR951.620e-5081.82Rubredoxin-1 n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
A0A5J4YRV62.190e-3658.95Rubredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A1X6NYE94.030e-3462.35Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2PH647.260e-2746.81Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0SZD02.550e-2647.87Rubredoxin-like domain-containing protein (Fragmen... [more]
B8BU965.720e-2646.39Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A1Z5KJZ76.600e-2648.86Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S0AQK43.100e-2545.74Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6S9B8823.440e-2547.73Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1VTP95.430e-2544.68Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.28.10coord: 26..65
e-value: 1.1E-13
score: 52.8
NoneNo IPR availablePANTHERPTHR48136RUBREDOXIN-LIKE SUPERFAMILY PROTEINcoord: 3..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..101
NoneNo IPR availableSUPERFAMILY57802Rubredoxin-likecoord: 24..69
NoneNo IPR availableTMHMMTMhelixcoord: 80..102
IPR024935Rubredoxin domainPFAMPF00301Rubredoxincoord: 28..64
e-value: 1.0E-5
score: 25.4
IPR024934Rubredoxin-like domainPROSITEPS50903RUBREDOXIN_LIKEcoord: 25..67
score: 11.038214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:717393..717710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8001.t1Ggra8001.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 717393..717710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8001.t1 ID=Ggra8001.t1|Name=Ggra8001.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MSSSEQQPESREDAKATAESSRYWQGEWICVDCGYTYKPGRRVKFEDLPA
SWKCPQCNAPKRRFAKKAGDYIAETAGTSNLPIVIFSVVGLVATVLFGIW
ATNNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024935Rubredoxin_dom
IPR024934Rubredoxin-like_dom