Ggra7884.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7884.t1
Unique NameGgra7884.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Homology
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BLAST of Ggra7884.t1 vs. uniprot
Match: A0A2V3IW12 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW12_9FLOR)

HSP 1 Score: 293 bits (751), Expect = 2.640e-94
Identity = 169/303 (55.78%), Postives = 215/303 (70.96%), Query Frame = 0 
Query:   44 PIATFRASCMRKTRRPQGLNVGRLYVTDTQLVFAAKYLNVAPEDANVTIELSEVHHVRRAGCFKRVLPHGVLVKCRPGPDYLMVMPCADHQEKLIKLLNQVLARVPRPKRSVKDALVRLASDSSTERVSNGAERDALRAKA---SNISPTQNSHPDASASKLNGSSERLAAFFGKRKKKSDITEESTTPYT--SNDHMESTPNLKFQQSPTAIKPLHDEARNNSSSKGFAFATDITSQMVEMTLSVPIPDVSAVVEHVQSFRSSETLFFFLATAFLLITTYGILSSVRMMSFRLAVIKEMVSR 341
            P+A+FRASCMRK RRPQGLNVGRLY+T T++VF A YLNVAP DANV IELSEVH   RA C+K++LPH VL+KCR GPDYLM M     Q++L+ +L++VL  +PRPKR+VKDAL RLASDSS +R + GAER+  R K    S  SP + S   +  +   GSS +L A   + +++   ++E T  +   S D   S   LK   S      +   A  + + K F FATDITS+ VE+TLSVPIP+VS V +HV+SFRS+E+LFF LATAFLL+TTYGILSSVRMM+FRLA+IKE+VS+
Sbjct:   58 PMASFRASCMRKARRPQGLNVGRLYITSTKVVFTASYLNVAPHDANVKIELSEVHQACRA-CYKKLLPHSVLIKCRRGPDYLMAMTSPQQQDQLMAVLDKVLQLLPRPKRTVKDALARLASDSSGDRANFGAEREPARVKGIPLSKSSPDRTSPKSSDDTTQGGSSGKLQALLPRLRRRIR-SDEGTQVHREESGDASLSDGRLKTVTSANKETYIQRNATGDDTPKSFNFATDITSEKVELTLSVPIPNVSPVAQHVRSFRSAESLFFLLATAFLLVTTYGILSSVRMMTFRLAIIKELVSQ 358
The following BLAST results are available for this feature:
BLAST of Ggra7884.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IW122.640e-9455.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..201
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..304
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 305..322
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 323..342
NoneNo IPR availableTMHMMTMhelixcoord: 304..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:236304..237332 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7884.t1Ggra7884.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 236304..237332 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7884.t1 ID=Ggra7884.t1|Name=Ggra7884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MKVPRPKSLAQTPEPSTATSLSLLDSKEVVPPFTLPPSPSLDPPIATFRA
SCMRKTRRPQGLNVGRLYVTDTQLVFAAKYLNVAPEDANVTIELSEVHHV
RRAGCFKRVLPHGVLVKCRPGPDYLMVMPCADHQEKLIKLLNQVLARVPR
PKRSVKDALVRLASDSSTERVSNGAERDALRAKASNISPTQNSHPDASAS
KLNGSSERLAAFFGKRKKKSDITEESTTPYTSNDHMESTPNLKFQQSPTA
IKPLHDEARNNSSSKGFAFATDITSQMVEMTLSVPIPDVSAVVEHVQSFR
SSETLFFFLATAFLLITTYGILSSVRMMSFRLAVIKEMVSRR*
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