Ggra787.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra787.t1
Unique Name	Ggra787.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	302

Homology

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BLAST of Ggra787.t1 vs. uniprot
Match: R7QP02 (Uma2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP02_CHOCR)

HSP 1 Score: 67.0 bits (162), Expect = 5.870e-9
Identity = 54/166 (32.53%), Postives = 78/166 (46.99%), Query Frame = 0

Query:   49 LHGKPCTIEEYLDLSVPDCGKYDLIEGRLV-THEMPDSDHDDLSNAYKEAY------EESGEPGERAYVDASIAIPKRTS--ASSPPRFNYRTPDFSV-----GIKSSTTEPQEDEFPSRSVTWKPGNPPRLISEFTSYN-KSTDLNDKTEEYAKAGVSRYMIVER 199
            LH  PCT+++Y DL      KY+L+EG L    EM    HD++ N            E      E     + +  P  +S  AS     + R PD  V     G++     PQ     S+ +++   +PP L  E TS + +S DL  K EEYAKAGV +Y+I++R
Sbjct:   47 LHLLPCTVDQYFDLPNAADNKYELVEGILWWKSEMATHSHDEIRNRVAAEIGRFHIAENLVVSTEMGLETSGLTTPSGSSHNASEKSLRSIRRPDVIVSQRDHGLRRCDLSPQ-----SKKISFPRNHPPLLALEVTSPSTRSADLTSKREEYAKAGVRQYVIIDR 207

The following BLAST results are available for this feature:

BLAST of Ggra787.t1 vs. uniprot

BLAST of Ggra787.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QP02	5.870e-9	32.53	Uma2 domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 261..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..110
IPR012296	Nuclease, putative, TT1808	GENE3D	3.90.1570.10	tt1808, chain A	coord: 49..236 e-value: 8.5E-16 score: 59.6
IPR008538	Putative restriction endonuclease	PFAM	PF05685	Uma2	coord: 56..204 e-value: 1.9E-13 score: 50.3
IPR008538	Putative restriction endonuclease	CDD	cd06260	DUF820	coord: 68..204 e-value: 1.40919E-7 score: 48.1945
IPR011335	Restriction endonuclease type II-like	SUPERFAMILY	52980	Restriction endonuclease-like	coord: 50..203

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000218_pilon	contig	tig00000218_pilon:15089..24955 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra787.t1	Ggra787.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000218_pilon 15089..24955 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra787.t1 ID=Ggra787.t1|Name=Ggra787.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MEPCSSPEPPALTPSNNTSPLSFPHHNRERNNSTRSSGSLPSLSSWRYLH
GKPCTIEEYLDLSVPDCGKYDLIEGRLVTHEMPDSDHDDLSNAYKEAYEE
SGEPGERAYVDASIAIPKRTSASSPPRFNYRTPDFSVGIKSSTTEPQEDE
FPSRSVTWKPGNPPRLISEFTSYNKSTDLNDKTEEYAKAGVSRYMIVERD
KSHVGTDHHNPMVHYGRLRGESYSFTTNDKHSTDPVGSPGPLHHTAETLL
NPASLTKIIESKRLRKELERQQDRNKRAIAKRKQDEADKQRKDPERSKKI
C*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012296	Nuclease_put_TT1808
IPR008538	Uma2
IPR011335	Restrct_endonuc-II-like