Ggra7835.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7835.t1
Unique NameGgra7835.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Homology
BLAST of Ggra7835.t1 vs. uniprot
Match: A0A2V3IW10 (DNA repair protein RAD51-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW10_9FLOR)

HSP 1 Score: 292 bits (748), Expect = 2.760e-95
Identity = 154/293 (52.56%), Postives = 206/293 (70.31%), Query Frame = 0
Query:    1 MRLEQLSLSPRTLQALRAAGESVESLLCHRSHRPHPTLSAAVLQEALHAIHAVATRASPLPTAQPPVPSGSAVFDANVALSSRSVIQLCGRSLAGKTLLCVSLAAAVLRHAHHVVWIDTCAGRWQVHTAVARFASPA--RLTVIPVCSASQALREFSRLSAQFHPLSTLPKPRLLVFDSPAALLAPILGLKGPAGWSGHAAMQHLTASINHFVTLSSATVLLTNRVVDNGTRPALGHVWSAFVDEQWMLQRVETHEERLEIRVTKSSKTDATCKFSVLITEKGITDNDIEQTQ 291
            MRL+ L L+P TLQAL++A E+VESLLCH  + PH +L   ++ +A  A+H VA RASP       + +  A F+ NV L S +V+QL G SLAGKT++C+SLAAAVL+    V+W+DTCAG W +  AV+  +      LTV    +A Q + +   L ++   L   P PRLL+FDSPA++L+P+LGLKGP GWSGH AMQ +T  I+ F+TLSSATV++TNRVVD+ TRPALG++WS FVD     QRV+ HE+RLE+R+T +SK   T  FSVLIT++G+TDND+EQTQ
Sbjct:    1 MRLQDLPLNPETLQALQSANETVESLLCHPFNEPHNSLPQHLISDAHAALHRVAVRASPSLKWGTSLLTPCASFNHNVGLPSTTVLQLYGTSLAGKTMICISLAAAVLKQTQRVIWLDTCAGEWLLRAAVSNHSDAQIDLLTVRTATNAPQIVHQLRALISELPSLPNAPMPRLLIFDSPASVLSPVLGLKGPNGWSGHTAMQQITTLISRFITLSSATVVVTNRVVDSATRPALGNIWSNFVDVHLFCQRVDAHEQRLELRLTVTSKRAPTSTFSVLITDQGMTDNDVEQTQ 293          
BLAST of Ggra7835.t1 vs. uniprot
Match: R7Q8Q8 (RECA_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8Q8_CHOCR)

HSP 1 Score: 98.6 bits (244), Expect = 4.310e-20
Identity = 94/297 (31.65%), Postives = 142/297 (47.81%), Query Frame = 0
Query:   37 TLSAAVLQEALHAIH-AVATRASPLPTAQP---PVPSGSAVFD--ANVALSSRSVIQLCGRSLAGKTLLCVSLAAAVLRHAHHVVWIDTCAGRW---QVHTAVARFASP--------ARLTVIPVCSASQAL-------------------REFSRLSAQFHPLSTLPKPRLLVFDSPAALLAPILGLK-GPAGWSGHAAMQHLTASINHFVTLSSATVLLTNRVVDNGTR--PALGHVWSAFVDEQWMLQRVETHEERLEI----------RVTKSSKTDATCKFSVLITEKGITD 284
            +LS + +Q  L  ++ A A RA PL +  P   P+ +GS+ FD   +  L  R++ QL G+   GKT   +++AA  LR    VVW+D+ +      ++ T +A             +RL V+P  + S AL                   R  S+   Q H  + L + +L+VFDS A +LAP+LGL+ GP  WSGH A+      +    + + A VL+TNRVV +G R  PALG+ W+A VD    L+ + T + +  +          R T SSK     +    + E GI D
Sbjct:   41 SLSPSSIQTLLSTLYSATAARAIPLSSLLPLPSPLRTGSSAFDDVLDGGLRPRAITQLAGQPATGKTHSALAIAAHALRGGA-VVWLDSSSTHAIFSRISTILAALTVDPIERDLLLSRLIVLPASTVSTALACLRALRKDLVTQHSVLGERSLSQDGPQKHLATVLARLKLVVFDSVANVLAPVLGLRDGP--WSGHVALNQCATELRWISSRTDAAVLVTNRVVRDGERLKPALGNTWTALVDVSIRLEVLSTRDAQASLSGDAQMKTFCRATVSSKKALPGQCQFQLCEDGIKD 334          
BLAST of Ggra7835.t1 vs. uniprot
Match: A0A835YM23 (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.330e-6
Identity = 57/167 (34.13%), Postives = 85/167 (50.90%), Query Frame = 0
Query:   80 LSSRSVIQLCGRSLAGKTLLCVSLAAAVLRHAHHVVWIDT---CAGRWQVHTAVAR---FASPARLTVIPV--C-SASQALREFSRLSAQF--HPLSTLPKP----------RLLVFDSPAALLAPILGLKGPAGWSGHAAMQHLTASINHFVTLSSATVLLTNRVV 225
            L+ + V ++ G++ AGKT LC+S AA        V++IDT   C+ R     A AR    A+PA L+ I +  C S +  L     L+ +    P++T              RL++ DS AA+LAP+LG +G A   G AA+  L A+++H     S  VL+TN  V
Sbjct:  114 LALQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAPAALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNA--PGAAALATLAAALSHTALSLSVAVLVTNGAV 278          
The following BLAST results are available for this feature:
BLAST of Ggra7835.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IW102.760e-9552.56DNA repair protein RAD51-like n=1 Tax=Gracilariops... [more]
R7Q8Q84.310e-2031.65RECA_2 domain-containing protein n=1 Tax=Chondrus ... [more]
A0A835YM234.330e-634.13P-loop containing nucleoside triphosphate hydrolas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 54..287
e-value: 8.3E-24
score: 86.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 66..284
NoneNo IPR availablePANTHERPTHR46457DNA REPAIR PROTEIN RAD51 HOMOLOG 4coord: 84..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:87170..88069 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7835.t1Ggra7835.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 87170..88069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7835.t1 ID=Ggra7835.t1|Name=Ggra7835.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MRLEQLSLSPRTLQALRAAGESVESLLCHRSHRPHPTLSAAVLQEALHAI
HAVATRASPLPTAQPPVPSGSAVFDANVALSSRSVIQLCGRSLAGKTLLC
VSLAAAVLRHAHHVVWIDTCAGRWQVHTAVARFASPARLTVIPVCSASQA
LREFSRLSAQFHPLSTLPKPRLLVFDSPAALLAPILGLKGPAGWSGHAAM
QHLTASINHFVTLSSATVLLTNRVVDNGTRPALGHVWSAFVDEQWMLQRV
ETHEERLEIRVTKSSKTDATCKFSVLITEKGITDNDIEQTQWTQQSPPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase