Ggra7815.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7815.t1
Unique NameGgra7815.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length446
Homology
BLAST of Ggra7815.t1 vs. uniprot
Match: A0A2V3J9G3 (Transcription termination factor MTERF2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9G3_9FLOR)

HSP 1 Score: 494 bits (1272), Expect = 1.820e-170
Identity = 257/423 (60.76%), Postives = 312/423 (73.76%), Query Frame = 0
Query:   23 CARRPRSTLRCCSAAPATARKRRTARQTPRRAAGAXXXAGADANRRAAQAFLRSLGLSAEQSRRLPARLPQLCRADVAPFAEPTLAXXXXXXXXXXXXXXXXXXXXQIFFRPRQQFAPRLHVLQHVAHIPRANVPPVVAKCPHVLWMHVNNAAAVVHTVVEQCPAMSLTTVGEVFSTVPHALLSAPAAIQHNLHAIRQAGVNDTAGMSRIVAKAPLVLVKDMNKCLSKRLSYLCDELAFPSATVAKILVSTPQLLDWSVEKQLVPKVNLLQSLMGDEYVAAAVHKVPSIFATDDILDRVLWLRDDVGLSEQQVRSVLREAPAILTYSVVGNLAPKWMFIHQTMGASVDDLVAAPREMLCANLQQRAMPRYAFMASSGKRDVSVVDILRGNDGEFCRNVAKCDAKVFRNYVDNDTYLLFFSRLM 445
            C RRPR    C SAAPA+  K R + + P  A         D  R  A  F  SLGLS E S RLPARLP+LCR+D+  FAEPTLA                    QIFFRPR++FAPR+  L++VA IP+ N+  V+AKCPHVLWM + NA  V  TV+E+CP +SL T+ EVF  VP  L+  P  I  N+ +IRQAGV+D AG+SRI+ KAPL LV D  K L+KRL YL  EL F  +T+ KILVSTP++L+WSVEK++ PK  LLQSL+GD++VAA +  VPSI   +D+LD VLWLRDDVGLS++QV+ VLREAPA+LTYSVVGNLAPKW FIH+TMGA+V+DLVAAPRE+LCANLQQRAMPRYAF+AS GKRDV+V+D+LRG+D EFC+ VAKCDA+VFR+YVDNDTYLLFFSRLM
Sbjct:   23 CTRRPRVVFHC-SAAPASPEKPRLSGKCPNEA---------DPKREVAVKFFLSLGLSTEASLRLPARLPKLCRSDLPVFAEPTLAFLRSHGLSPRQVARAVRNAPQIFFRPREEFAPRIEFLENVARIPKDNLKSVIAKCPHVLWMDLKNAGMVTETVIEECPRISLKTLSEVFLRVPQVLIVRPNHISANIDSIRQAGVSDAAGLSRIIGKAPLALVYDTKKNLAKRLDYLSGELGFSKSTIGKILVSTPEILEWSVEKKIKPKTALLQSLVGDDHVAAVIETVPSILGVNDVLDPVLWLRDDVGLSDKQVQKVLREAPAVLTYSVVGNLAPKWTFIHETMGATVEDLVAAPREVLCANLQQRAMPRYAFLASHGKRDVAVIDVLRGSDAEFCKEVAKCDAQVFRSYVDNDTYLLFFSRLM 435          
BLAST of Ggra7815.t1 vs. uniprot
Match: A0A0D9VU87 (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VU87_9ORYZ)

HSP 1 Score: 68.9 bits (167), Expect = 8.840e-10
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 0
Query:  248 LSKRLSYLCDELAFPSATVAKILVSTPQLLDWSVEKQLVPKVNLLQSLMGDEYVAAAVHKVP--SIFATDDILDRVLWLRDDVGLSEQQVRSVLREAPAILTYSVVGNLAPKWMFIHQTMGASVDDLVAAPREMLCANLQQRAMPRYAFMASSGKRDVSVVDILRGNDGEFCRNVAKC 423
            ++  L +L DE   P+  + ++L   P+LL   V  +L P +  L++L     VA   H+    S    D +L R+ +L D +GL  +  RS+ R  PA+  Y + GN+ PK  ++   M    D+L   P E     L  R  PR+   A+ G R + +  +LR  D +F   +A C
Sbjct:   13 IAAALRFLTDEAGVPADDLPRVLRRRPRLLVSPVAARLRPTLYFLRALG----VADLPHRADLLSFSVEDKLLPRIEFLEDALGLPSRAARSMARRFPALFYYGIEGNMRPKADYLLGEMRRGADELFDFP-ECFSYALATRIAPRHEACAARGVR-MPLPAMLRPGDAKFRATLAGC 184          
BLAST of Ggra7815.t1 vs. uniprot
Match: transcription termination factor MTEF1, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD86CD (transcription termination factor MTEF1, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD86CD)

HSP 1 Score: 63.2 bits (152), Expect = 2.040e-7
Identity = 50/190 (26.32%), Postives = 90/190 (47.37%), Query Frame = 0
Query:  229 MSRIVAKAPLVLVKDMNKCLSKRLSYLCDELAFPSATVAKILVSTPQLLDWSVEKQLVPKVNLLQSL--MGDEYVAAAVHKVPSIFATDDILDRVLWLRDDVGLSEQQVRSVLREAPAILTYSVVGNLAPKWMFIHQTMGASVDDLVAAPREMLCANLQQRAMPRYAFMASSGKRDVSVVDILRGNDGEF 416
            + RI+   P +L  D    +   + +L DE++     + K +   P+LL  SV+ QL P +  LQSL  +G + + +    V                      + ++V  +   +PAILTYSV  NLAPK  F  + M  +V+++   P +    +L+++  PR+  +   G   + + ++L+ +DGEF
Sbjct:   88 VGRILDMFPDLLTSDPEVVILPVIRFLADEISISRFEIPKSISRCPRLLVSSVDFQLRPALAFLQSLGFVGRDAITSRTT-VXXXXXXXXXXXXXXXXXXXXXXTREEVAKMAVRSPAILTYSVHNNLAPKVKFFMEEMSGNVEEIKRFP-QYFSFSLEKKIKPRHRLLKEHGIL-MPLSEMLKVSDGEF 274          
The following BLAST results are available for this feature:
BLAST of Ggra7815.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J9G31.820e-17060.76Transcription termination factor MTERF2, chloropla... [more]
A0A0D9VU878.840e-1029.78Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
transcription termination factor MTEF1, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD86CD2.040e-726.32transcription termination factor MTEF1, chloroplas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 267..298
e-value: 0.089
score: 21.9
coord: 336..368
e-value: 0.026
score: 23.7
coord: 85..116
e-value: 630.0
score: 5.4
coord: 121..152
e-value: 1000.0
score: 3.9
coord: 302..331
e-value: 1400.0
score: 2.9
coord: 230..262
e-value: 1.5
score: 17.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 107..416
e-value: 3.8E-28
score: 98.4
coord: 73..174
e-value: 3.0E-6
score: 26.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 96..297
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 264..418
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 188..433
e-value: 2.9E-38
score: 133.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 264..418
coord: 96..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:12491..13828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7815.t1Ggra7815.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 12491..13828 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7815.t1 ID=Ggra7815.t1|Name=Ggra7815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=446bp
MAFINAFTSQPPLLPSAASTPICARRPRSTLRCCSAAPATARKRRTARQT
PRRAAGAAGAAGADANRRAAQAFLRSLGLSAEQSRRLPARLPQLCRADVA
PFAEPTLAYLRSLGLGARQIARAVQHAPQIFFRPRQQFAPRLHVLQHVAH
IPRANVPPVVAKCPHVLWMHVNNAAAVVHTVVEQCPAMSLTTVGEVFSTV
PHALLSAPAAIQHNLHAIRQAGVNDTAGMSRIVAKAPLVLVKDMNKCLSK
RLSYLCDELAFPSATVAKILVSTPQLLDWSVEKQLVPKVNLLQSLMGDEY
VAAAVHKVPSIFATDDILDRVLWLRDDVGLSEQQVRSVLREAPAILTYSV
VGNLAPKWMFIHQTMGASVDDLVAAPREMLCANLQQRAMPRYAFMASSGK
RDVSVVDILRGNDGEFCRNVAKCDAKVFRNYVDNDTYLLFFSRLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf