Ggra7766.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7766.t1
Unique NameGgra7766.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Homology
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BLAST of Ggra7766.t1 vs. uniprot
Match: A0A2V3IWR8 (DNA repair protein REV1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWR8_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 1.710e-75
Identity = 115/149 (77.18%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   36 PKRE--LGWTRSSYFSEKQKKLTAQAPAAVTAILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKVWYRKQVTHVVADCLAASKIEKELSLSVSQRGQAVIVKPKWLEDSLRERKKLPPWEYQVVRHGDIRDVGDFFRMNKTIKKVKKK 182
            PK+E  + WTR+SYF  +QKKL AQAP A T ILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKVWYRKQVTHV+ADCLAASK+EKELSL V++RGQAV+VKPKWL++SL E KKLP W+YQVVRH D+RDV  FFR  K I KV+KK
Sbjct:   35 PKKEDKVSWTRTSYFEHRQKKLAAQAPKAQTDILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKVWYRKQVTHVIADCLAASKVEKELSLEVTKRGQAVVVKPKWLQNSLSEGKKLPTWKYQVVRHADVRDVATFFRREKAISKVRKK 183
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BLAST of Ggra7766.t1 vs. uniprot
Match: A0A177AWV3 (Uncharacterized protein n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177AWV3_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 9.740e-6
Identity = 30/116 (25.86%), Postives = 60/116 (51.72%), Query Frame = 0 
Query:   64 TAILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKVWYRKQVTHVVADCLAASKIEKELSLSVSQRGQAVIVKPKWLEDSLRERKKLPPWEYQVVRHGDIRDVGDFFRMNKTIKKV 179
            T I K V +Y TG    S   + +++ ENGG+ +  + + +VT ++A  +           + +   +  IV+PKW+ DSL ++K LP  EY + +   I+ + +    ++T +++
Sbjct:   33 TEIFKNVAIYVTGYTVPSYNEIRKIIIENGGKFIHNYSKSKVTFIIATNVYGGN-------NSTHFPKDCIVRPKWIIDSLNQKKCLPVHEYTLFKQETIQQIPNTHENSETDEEI 141
The following BLAST results are available for this feature:
BLAST of Ggra7766.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWR81.710e-7577.18DNA repair protein REV1 n=1 Tax=Gracilariopsis cho... [more]
A0A177AWV39.740e-625.86Uncharacterized protein n=1 Tax=Intoshia linei Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 64..147
e-value: 7.4E-9
score: 45.4
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 67..155
e-value: 7.6E-8
score: 32.6
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 62..157
score: 18.931421
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 63..158
e-value: 5.9E-19
score: 70.2
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 64..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..23
NoneNo IPR availablePANTHERPTHR45990DNA REPAIR PROTEIN REV1coord: 17..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:416116..416667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7766.t1Ggra7766.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 416116..416667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7766.t1 ID=Ggra7766.t1|Name=Ggra7766.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MNSSGNAEVKREDSGKDVNADTKESNQLKSSANAKPKRELGWTRSSYFSE
KQKKLTAQAPAAVTAILKGVKVYFTGVKSTSQRRLERLVWENGGEVLKVW
YRKQVTHVVADCLAASKIEKELSLSVSQRGQAVIVKPKWLEDSLRERKKL
PPWEYQVVRHGDIRDVGDFFRMNKTIKKVKKKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf