Ggra7764.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7764.t1
Unique Name	Ggra7764.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	361

Homology

[Close]

BLAST of Ggra7764.t1 vs. uniprot
Match: R7QBR3 (Lipoyl-binding domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBR3_CHOCR)

HSP 1 Score: 184 bits (468), Expect = 3.480e-48
Identity = 169/411 (41.12%), Postives = 222/411 (54.01%), Query Frame = 0

Query:    1 MSLSAAPRSRRPADGGSSGKRGRPESLVRQFWEDVDTPGVGPKCMFCDHRSQTRIFRAPPATRHTLICKNAPEHVKERLRRLTNNKYSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVQPVPQQPQHPQHVSQ--------QLDHTPPXXXXXXXXXXXXXXXXX----------------SHHTFDFKXXXXXXHSA---------------------------HD-AALPTMPSPRHIVPNIPTQHTMPNTAAMDNSV------VPMRSALLSE----------------RARPPHVALPTAASDLLYTTPPNHRMMDDM--------STGIAQAHAALSAAVMEALFSD--GRKKDGPVPTPAEFRLALRDMKDQARAKSKRQRDEARAKCVRLESALASLVSTGSV 327
            MSL+ A R RR +DG +SGKRGRPES VR++WED+  P VGPKC+FCDHRS TR+FRAPPATRHTLICKNAPE VK+ LRRLTNNKYSR                XXXXX        V+  P  PQ  Q            +  H  P  XXXXXXXXXXXXXXX                 HH     XXXXXX                              HD  ++P++ SPRH+  N+ +     +TAA++ +V      V +RSA+L++                 +   + A  + A+D+LY +    R++           +  + +A+A L+ AVMEA+F    GRKKDG VPTP EFR AL+D+K+ AR K+KRQR+EARA+  RL++A++ LV+T ++
Sbjct:  140 MSLTPA-RGRRVSDGPTSGKRGRPESYVRRYWEDIGVPNVGPKCIFCDHRSVTRLFRAPPATRHTLICKNAPEDVKDTLRRLTNNKYSRRPPVASDSSSVQAVAVXXXXX--------VESKPHNPQSQQRXXXXXXXXXXXRTQHPHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDPTSIPSIASPRHVSANVVSSMNGASTAALNPAVDASGVPVTVRSAILNDPRSVATVPRTMGLVHAASHAVNSATMSPATDILYASGSAQRLLHQQPEELTSPATASLNRAYAELAFAVMEAMFPPALGRKKDGHVPTPGEFRAALQDIKEAARCKAKRQRNEARAEAARLQNAISVLVTTKTI 541

The following BLAST results are available for this feature:

BLAST of Ggra7764.t1 vs. uniprot

BLAST of Ggra7764.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QBR3	3.480e-48	41.12	Lipoyl-binding domain-containing protein n=1 Tax=C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 297..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 343..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:413317..414399 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7764.t1	Ggra7764.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000088_pilon 413317..414399 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7764.t1 ID=Ggra7764.t1|Name=Ggra7764.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MSLSAAPRSRRPADGGSSGKRGRPESLVRQFWEDVDTPGVGPKCMFCDHR
SQTRIFRAPPATRHTLICKNAPEHVKERLRRLTNNKYSRRPPPPPDAAAP
PNAVPAAALSVPPPQQHHVQPVPQQPQHPQHVSQQLDHTPPPQHPHTPVP
HPPPPQQPSHHTFDFKPHPPPDHSAHDAALPTMPSPRHIVPNIPTQHTMP
NTAAMDNSVVPMRSALLSERARPPHVALPTAASDLLYTTPPNHRMMDDMS
TGIAQAHAALSAAVMEALFSDGRKKDGPVPTPAEFRLALRDMKDQARAKS
KRQRDEARAKCVRLESALASLVSTGSVRHVEVDSDDSEEELDNEAQLGPK
REWNITYDRK*