Ggra7711.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7711.t1
Unique Name	Ggra7711.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	286

Homology

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A2V3IWZ6 (RNA-binding protein 42 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWZ6_9FLOR)

HSP 1 Score: 254 bits (650), Expect = 1.780e-81
Identity = 150/274 (54.74%), Postives = 170/274 (62.04%), Query Frame = 0

Query:   12 DLDAEFELFQRQLQAAVANTASHARHPLSHPAPAEPSPPKPAPEKQPLXXXXXXXPSPATAXXXXXXXXXXXXXXAGRWKWDGSAWRWRADALTSPSSPSSLPPTIAAHPTVPDPASXXXXXXXXXXXXXXXXXXXXXXTQQQSPPHHSTAVVKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKRALKGKWGHVKALRTISKR 285
            D DAEFELF+RQLQAAVA              P    PP     K   XXXXXXX     +               GRWKWDG+AWRWR+D    P S  S P   +A    P PAS                       Q   P  H+ + +KRTAAGKVWHD +L+QFPPNDHRLFVGDLAPDA+E  L+  FS YPS+N+SRV+RDK++G CKGY FLSF+DGRDMLRA+SEMNGKYVAGRPLKLKR KWEKRALKGKW  VKALRTI+KR
Sbjct:    4 DDDAEFELFERQLQAAVAKV------------PRTTVPPAADAHKPDXXXXXXXXXXXXXSTAPDKRPQVNKAQPTGRWKWDGTAWRWRSDLSAPPPSAQSQPSASSA----PQPASQSPSTQPV--------------AQAPKPAQHNASTIKRTAAGKVWHDPTLLQFPPNDHRLFVGDLAPDASEQHLDAVFSAYPSYNMSRVIRDKQSGACKGYAFLSFADGRDMLRALSEMNGKYVAGRPLKLKRGKWEKRALKGKWNQVKALRTITKR 247

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BLAST of Ggra7711.t1 vs. uniprot
Match: R7QCZ3 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCZ3_CHOCR)

HSP 1 Score: 169 bits (428), Expect = 1.300e-47
Identity = 112/282 (39.72%), Postives = 140/282 (49.65%), Query Frame = 0

Query:   10 DPDLDAEFELFQRQLQAAVANTASHARHPLSHPAPAEP-----SPPKPAPEKQPLXXXXXXXPSPATAXXXXXXXXXXXXXXAGRWKWDGSAWRWRADALTSPSSPSSLPPTIAAHPTVPDPASXXXXXXXXXXXXXXXXXXXXXXTQQQSPPHHSTAVVKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKRALKG-KWGHVKALRTISKR 285
            DPDLDAEF  F+ QLQ  V+        P S P P        S    A    P        P  AT+               G+WKWDG+                       A P+ P P+                            P   + A+VKRTAAG VW DHSL ++P NDHR+FVGDLAPDAT  +L  AFS YPSFN++RVV+DK++G CKGYGF+SF+ G DM+ A+ EMNGKYV  RP+KLK+S W+KR L G +   +K   TI K+
Sbjct:    6 DPDLDAEFAQFEAQLQTVVSKPQPSVL-PSSAPVPTGDNVTARSNRNAATRTSPATTTHSHVP--ATSPTPVLATNNKTAPLTGKWKWDGANAXXXXXXXXXXXXXXXXXXXXXAFPSRPVPSHATAYPYSNPSLHMSAPPTAV-------PSKKAAALVKRTAAGDVWQDHSLAEWPENDHRIFVGDLAPDATNEELVMAFSAYPSFNMARVVQDKRSGQCKGYGFVSFAAGEDMIAALREMNGKYVGSRPVKLKKSNWQKRNLDGARRKELKLFNTIRKK 277

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A7S0BN04 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BN04_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 3.260e-34
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKRAL 269
            + RTAAG+VW D +L  +P NDHR+FVGDLA DAT+  L  AF  + SF L+RVV+DK+T  C+G+GF+SF +  DM++A+ EMNGKYV  RP+KL++S W +R L
Sbjct:   43 ILRTAAGEVWEDPTLEAWPENDHRIFVGDLAGDATDEVLTAAFQKFDSFQLARVVKDKRTRKCRGFGFVSFGNAEDMVKALKEMNGKYVGNRPVKLRKSNWNERTL 148

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A6T6BX83 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BX83_9RHOD)

HSP 1 Score: 130 bits (327), Expect = 5.170e-32
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 0

Query:  166 RTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKRAL-KGKWGHVKALRTISK 284
            RTAAG VW D ++  +P ND R+FVGDL  D T+  L  AF  +PS+N+SRVV DK+T  CKG+GF+SF  G DM+ AM EMNGKY+  RP KL++S W++RA+ +G+   ++AL+  +K
Sbjct:  220 RTAAGTVWIDPTMEAWPENDFRIFVGDLGGDTTDETLRMAFERFPSYNMSRVVYDKRTKKCKGFGFVSFGKGEDMIHAMKEMNGKYIGSRPCKLRKSNWKERAMTEGRHKDLRALKKFTK 339

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A388K6S9 (RRM domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K6S9_CHABU)

HSP 1 Score: 128 bits (321), Expect = 1.070e-31
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 0

Query:  151 TQQQSPPHHSTAVVKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKR 267
            ++ + P H     V R AAG +W D +L  +P NDHRLF GDL  +  +  L  AF+ Y SFN++RVVRDK+TG  KGYGF+SFS+  D+  A+ EMNGKYV  RP+KL++S W++R
Sbjct:  142 SEAEQPTHPKKRAVPRKAAGFIWEDPTLADWPDNDHRLFCGDLGNEVNDEVLTKAFAKYSSFNMARVVRDKRTGKTKGYGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSTWKER 258

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A8B8JXV3 (RNA-binding protein 42-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JXV3_ABRPR)

HSP 1 Score: 126 bits (316), Expect = 1.380e-31
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKR 267
            V R AAG+ W D SL ++P NDHRLF GDL  +  +  L+ AFS +PSFN++RVVRDK++G  KGYGF+SF+D  D+  A+ EMNGKYV  RP+KL +SKW++R
Sbjct:   95 VPRRAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKER 198

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BLAST of Ggra7711.t1 vs. uniprot
Match: M2X3E2 (Polyadenylate-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X3E2_GALSU)

HSP 1 Score: 127 bits (319), Expect = 1.480e-31
Identity = 62/123 (50.41%), Postives = 87/123 (70.73%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKRAL-KGKWGHVKALRTISKR 285
            V RTAAG++W D +L+++P ND RLFVGDL  DAT+  L T F  +  +N++RVV+DK+TG CKGYGF+SFS    M++AM  +NGKYV  RP K+++S W++R L K K   V+ L+   +R
Sbjct:  144 VVRTAAGEIWEDTTLLEWPDNDFRLFVGDLGHDATDELLQTTFGRFSGYNMARVVKDKRTGRCKGYGFVSFSKPEGMIQAMKALNGKYVGSRPCKIRKSTWKERLLTKDKKPEVELLQQFRQR 266

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A834TXC7 (RNA-binding protein 42 n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834TXC7_9FABA)

HSP 1 Score: 125 bits (315), Expect = 1.990e-31
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKR 267
            + R AAG+ W D SL ++P NDHRLF GDL  +  +  L+ AFS +PSFN++RVVRDK++G  KGYGF+SF+D  D+  A+ EMNGKYV  RP+KL +SKW++R
Sbjct:   97 IPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKER 200

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BLAST of Ggra7711.t1 vs. uniprot
Match: RNA-binding protein 42-like isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125E5328 (RNA-binding protein 42-like isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125E5328)

HSP 1 Score: 127 bits (318), Expect = 2.280e-31
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKR 267
            V R AAG+ W D +L  +P NDHRLF GDL  +  +  L+ AFS +PSFN++RVVRDK+TG  KGYGF+SFS+  D+  A+ EMNGKYV  RP+KL++S+W+ R
Sbjct:  115 VPRKAAGQTWEDPTLADWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKIKGYGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSRWQDR 218

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BLAST of Ggra7711.t1 vs. uniprot
Match: A0A445ES16 (RRM domain-containing protein n=2 Tax=Arachis TaxID=3817 RepID=A0A445ES16_ARAHY)

HSP 1 Score: 125 bits (315), Expect = 2.770e-31
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 0

Query:  164 VKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEAQLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGKYVAGRPLKLKRSKWEKR 267
            V R AAG+ W D SL ++P NDHRLF GDL  +  +  L+ AF+ +PSFN++RVVRDK++G  KGYGF+SF+D  D+  A+ EMNGKYV  RP+KL +SKW++R
Sbjct:  109 VPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKER 212

The following BLAST results are available for this feature:

BLAST of Ggra7711.t1 vs. uniprot

BLAST of Ggra7711.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IWZ6	1.780e-81	54.74	RNA-binding protein 42 n=1 Tax=Gracilariopsis chor...	[more]
R7QCZ3	1.300e-47	39.72	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
A0A7S0BN04	3.260e-34	55.66	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]
A0A6T6BX83	5.170e-32	51.67	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A388K6S9	1.070e-31	50.43	RRM domain-containing protein n=1 Tax=Chara brauni...	[more]
A0A8B8JXV3	1.380e-31	56.73	RNA-binding protein 42-like n=1 Tax=Abrus precator...	[more]
M2X3E2	1.480e-31	50.41	Polyadenylate-binding protein n=1 Tax=Galdieria su...	[more]
A0A834TXC7	1.990e-31	55.77	RNA-binding protein 42 n=2 Tax=Caesalpinioideae Ta...	[more]
RNA-binding protein 42-like isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125E5328	2.280e-31	55.77	RNA-binding protein 42-like isoform X1 n=5 Tax=Ipo...	[more]
A0A445ES16	2.770e-31	55.77	RRM domain-containing protein n=2 Tax=Arachis TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 187..260 e-value: 2.6E-20 score: 83.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 188..258 e-value: 1.9E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 186..264 score: 16.261356
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 130..276 e-value: 1.1E-23 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..89
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 142..267
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 142..267
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 180..262 e-value: 1.18405E-40 score: 133.887
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 178..264

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:121911..122768 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7711.t1	Ggra7711.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000088_pilon 121911..122768 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7711.t1 ID=Ggra7711.t1|Name=Ggra7711.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MTDPAATANDPDLDAEFELFQRQLQAAVANTASHARHPLSHPAPAEPSPP
KPAPEKQPLAQPLAQPPSPATAAPHPRESAPAVAQPAGRWKWDGSAWRWR
ADALTSPSSPSSLPPTIAAHPTVPDPASASASASASASASASASASASAS
TQQQSPPHHSTAVVKRTAAGKVWHDHSLVQFPPNDHRLFVGDLAPDATEA
QLNTAFSTYPSFNLSRVVRDKKTGTCKGYGFLSFSDGRDMLRAMSEMNGK
YVAGRPLKLKRSKWEKRALKGKWGHVKALRTISKR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034215	RBM42_RRM
IPR035979	RBD_domain_sf