Ggra7678.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7678.t1
Unique NameGgra7678.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length319
Homology
BLAST of Ggra7678.t1 vs. uniprot
Match: A0A2V3IX21 (CHZ domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX21_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 7.440e-66
Identity = 151/316 (47.78%), Postives = 184/316 (58.23%), Query Frame = 0
Query:    9 SQDEILPMVRQILVGQDLSKITGKMVRERIIKQLGDRIQPNDLGAVKTAVKSALKVVLQQSANPAEPEAPAAPPPGEDHDTTKQLPTESTCDPVH---PAAGTEPNREDLEEEESRANNPKSDSDFNDGHESKIRPPSKKRVRKVVRSDXXXXXXXXXXXXX--RRKKNPATSVQKRARSQPNSSEQRRLDKLKKVCRQLGAPVPPGKLRSTDPREKYDTIIQYLRSKGVREADPLKLSSRQISRHRERLAREKELEGLDVKNIIEEGGRSRRR-ASKPVKQLSDKLPSDLSGAELSEDSDSAESEGYAAPSDGSE 318
            SQ EI  MVR +L GQDLS+ITGK+VRER             +  VK AVKSAL VVL  +A+ A       P P  D    ++       +  H   P    +P       E  +   P  D D  D      +  ++KR RKV  SD               RRKK+ +T+V KR     NS   RRL  LKK+CRQLG   PP +LR  D  EKY+ ++ +LRS+GV++ DPL ++  +I+RHR+R+AREKELEGLD  NIIEE GRSRRR ASKP  QLSD+LPSDLSGAELSE SDS ESEGYAAPSDGSE
Sbjct:    6 SQQEITSMVRDMLTGQDLSQITGKIVRERXXXXXXXXXXXXXM-QVKQAVKSALNVVLSSTADSAPKPQQPHPKPEPDTAAAEEFAKSPQHEKHHHDIPQKHEQPKERHASPEPQQ---PDYDDDVFDDEPPVRKSFARKRARKVALSDSDSASQADSEPPAKPRRKKSASTTVAKRQHVVANSPAARRLQTLKKLCRQLGCTAPPSRLRGKDDVEKYNNVLSHLRSRGVQDPDPLHMTPNEIARHRKRIAREKELEGLDASNIIEEEGRSRRRRASKPTVQLSDRLPSDLSGAELSEKSDSGESEGYAAPSDGSE 317          
BLAST of Ggra7678.t1 vs. uniprot
Match: R7QE44 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE44_CHOCR)

HSP 1 Score: 114 bits (285), Expect = 1.000e-25
Identity = 101/317 (31.86%), Postives = 162/317 (51.10%), Query Frame = 0
Query:    8 VSQDEILPMVRQILVGQDLSKITGKMVRERIIKQLGDRIQPNDLGAVKTAVKSALKVVL----QQSANPAEPEAPAAPPPGED--------------HDT-TKQLPT--------------ESTCDPVHPAAG---TEPN---------REDLEEEESRANNPKSDSDFNDGHE-----SKIRPPSKK---RVRKVVR----SDXXXXXXXXXXXXXRRKKNPATSVQKRA-RSQPNSSEQRRLDKLKKVCRQLGAPVPPGKLRSTDPREKYDTIIQYLRSKGVREADPLKLSSRQISRHRERLAREKELEGLDVKN 266
            ++Q+E+  +VR+IL G DLSK TGK+VRER+IK++G+R  P D+ A+K +++ ALK VL    Q+ + PA+  +P + P  +               H T TK                  +S  +  HP+     +EP          R  ++E+E   N  ++  D ++  +     SK+ P S+K   R R   +    S               RK    TS  + A RS+PN+S +RRL+KL+ +CRQLG+  PP ++R     +K   +++YLR KG+ + DP  L+ ++++ HR RL +EKEL GLD ++
Sbjct:   17 ITQNEMESLVRRILDGADLSKTTGKIVRERVIKEIGERAGP-DMRALKHSIRDALKNVLNGHAQEISQPAQQPSPVSKPNSDKGIANGNQVKRDVGKHGTKTKSSAAAAGGHAALAGTAAQDSVDENEHPSVQMKKSEPTVPMQRKRRARTVVDEDEDDENIDETVHDDDEAFDNGVGGSKLDPKSEKAESRPRPAKKGSSVSHLNQSPSIQTIGANSRKVVAPTSTPRPAKRSRPNTSAERRLEKLRSICRQLGSMAPPARMRGKSVPDKCTAVLEYLRQKGIEDPDPTSLTRKEVAVHRARLEQEKELAGLDTRH 332          
BLAST of Ggra7678.t1 vs. uniprot
Match: A0A1Y1I4T3 (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4T3_KLENI)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-6
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 0
Query:  191 RRLDKLKKVCRQLGAPVPPG---KLRSTDPREKYDTIIQYLRSKGVREADPLKLSSRQISRHRERLAREKELEGLDVKNIIEEGGRSRRRASK 280
            +R+ +LK + +Q G  +PP    K +  D   + + +I+ L+    +E      S ++I R R+RL  +KELEG+D +NIIEEGGR  RRA++
Sbjct:  299 KRVVELKSILKQCGITIPPAVYKKAKDADAENRQEALIRGLKDLLKKEGLSGHPSDQEIKRVRKRLQTQKELEGIDTENIIEEGGRGSRRAAR 391          
The following BLAST results are available for this feature:
BLAST of Ggra7678.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IX217.440e-6647.78CHZ domain-containing protein n=1 Tax=Gracilariops... [more]
R7QE441.000e-2531.86Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1Y1I4T31.800e-637.63Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019098Histone chaperone domain CHZSMARTSM01082CHZ_2coord: 253..288
e-value: 9.4E-4
score: 28.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:45407..46466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7678.t1Ggra7678.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 45407..46466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7678.t1 ID=Ggra7678.t1|Name=Ggra7678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MANMKSVVSQDEILPMVRQILVGQDLSKITGKMVRERIIKQLGDRIQPND
LGAVKTAVKSALKVVLQQSANPAEPEAPAAPPPGEDHDTTKQLPTESTCD
PVHPAAGTEPNREDLEEEESRANNPKSDSDFNDGHESKIRPPSKKRVRKV
VRSDSESDSDSEPQLKPRRKKNPATSVQKRARSQPNSSEQRRLDKLKKVC
RQLGAPVPPGKLRSTDPREKYDTIIQYLRSKGVREADPLKLSSRQISRHR
ERLAREKELEGLDVKNIIEEGGRSRRRASKPVKQLSDKLPSDLSGAELSE
DSDSAESEGYAAPSDGSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019098Histone_chaperone_domain_CHZ