Ggra7662.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7662.t1
Unique NameGgra7662.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length893
Homology
BLAST of Ggra7662.t1 vs. uniprot
Match: A0A2V3IU22 (C3H1-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU22_9FLOR)

HSP 1 Score: 684 bits (1764), Expect = 1.530e-231
Identity = 454/894 (50.78%), Postives = 567/894 (63.42%), Query Frame = 0
Query:    1 MASVEQAEFVDLDDPNDFMRVRQSPSFENRPTYWNQPPNPHXXXXXXXXXXXLQHGHAFFDVGLSVS-HPPQPLAMPIAQSLQLPQPHNMSPP-VLPQGNTLQLHDPPPTLMSXXXXXXXXXXXXXXXXXXXXXXGQPAPFIHLPPQPPSTHALRHHAQQPIHPAILQPPRAPLIPRPSYRPNSLQHTPPLPMPHRIPSMHIHRRPPTXXXXXXXXXXXXXLP-SADNPPLRHSSXXXXXXXKKPSLAELRLRALQGRRRTNSLNPNASSSSLSAVGSTAPPFPEMSQPLPGAPVVFEFSSSDEESDVEVDPRPSLERNETPSSTRKKAIEDMKIRVVRLGQCPSMLTKSSDPKTLSERRREGSPAVSVIHPGQSPSP---VPSAPLFSLKSGDTAPVTSFNSCDNDASQPILQKSDIPNAVQNKPQTPTSKAKLEEIAQLRRQIKQIEHRIAQQKTGRQKLEQKSDSQSLTKKPPSPQVTTPINPLKRPSNSSKPFGVRTDSEKRRRYYTGTQLHRPPTPSVIPVVSEATSQPFSPTHGATESTSSSLSDPASKPALWKENSVQKSAVPNHVDAANTRLIDDLRTELEESKKKLDSERDTNRLLQAADVSVAEAYAKMGFKRSRMQSVQDDLRRAQTDLVTAEEEYRATVSAALRVKASLGVDASENNYASIDISAATAEHSTTSQDVDQNTEEVSLGTERNDSRELIRYDPSPLKLGPALKEEGEIIESENEVSHQSDPILRPSPYTPSPTVMYNSVLTGLKAFILRIPKYAKATDRRNLSPLSLSWSSKLNPNKALCPQELRGQCSNRKCLYQHLRHPINRRVHAFDVIDVVQTYFPEEAWKSAERNVVAAKLAIYEGKNQNVEDIVFQLISFLCPTSSKLPFAPLTQARD 888
            MA +E  EF+DLDDP DFM V   PSF NRP YWN    P            L  GH FFDVG++   HP Q LA+P+  S+Q+PQPH +SPP    QGN L +H     + S           X            P                    Q+P+H  ++Q  RAPLIPRP+Y   S+QH PP    HR+PS  +  R P XXXXXXXXXX        ++P      XXXXXX KKPSLAELR RAL G  RTN   P+ S+SS+   GS+A   P +    PG  ++FEFS+SDEES+ E  P PS+    + ++ RK+AIEDMKIRVVRLGQCPSMLTK ++ +  +ER   G    S  +P    +P   +P+ P  S K+ D   + S  S DNDA Q  LQ   I    Q K Q PT  AK ++IA LRRQIK++E RIAQQK+ +Q  E ++  +SLT    SP   + ++ LKR + S+KP   R + EKRRRYY+  Q    P    +P VS + S P      ATESTSSS+S    +P+LWKENSV+K   P  VD A+TRLI+DLR ELEESKK LDSERD NRL+QAADVSVAEAYAK+GFKRSR++SVQ +L++AQTD+VTAEEEYR TV+AA RV+ASLG D  +N Y SIDI +  AE  + + D+  +    S   + ++ ++   Y  SP+KL    KE     E E +  +QSD +LRPSPYTPSPT +Y SVLTGLKAFILRIP +AKA+DR+N SPLSL+W+ KL+PNKALCPQELRGQCSNRKC+YQHLR P+N  +HA +VID +Q + P + W SAER +VAAKLAIYEGKNQ+V+DIV  LISFLCP SSK+PFAPL Q +D
Sbjct:    4 MAPIEDGEFIDLDDPKDFMPVNPPPSFNNRP-YWNTGVAP-APPQLPQVAPQLPPGHRFFDVGMAPPPHPAQALAIPMQHSMQVPQPHGISPPPTFAQGNILSMHPRASPMHSMHPSAPDIMRVXPPQLPMH----NPXXXXXXXXXXXXXXXXXXXXQRPLHTPMMQXXRAPLIPRPTYESTSVQHMPPPSHSHRMPSRILRSRTPXXXXXXXXXXXSESPQLHPESPXXXXXXXXXXXXRKKPSLAELRRRALAGMPRTN---PSMSNSSILIPGSSASSIPSLPNQAPGDAIIFEFSTSDEESEDERIPSPSVGNVNSTATDRKRAIEDMKIRVVRLGQCPSMLTKDTNTRAFAER---GDGIQSSGYPPLKRTPSLSLPAMPSLSAKASDNVSIASLTSGDNDALQ-SLQTLSILTGHQGKWQPPTPAAKRDKIALLRRQIKEMEQRIAQQKSDQQTGEHQARPKSLT----SPLPNSSLSILKRSAESTKPHSGRHEPEKRRRYYSDIQRSSLPAHDAVPPVSPSVS-PCRSAPDATESTSSSVSAAIPEPSLWKENSVRKLGSPVQVDTADTRLINDLRLELEESKKALDSERDANRLIQAADVSVAEAYAKLGFKRSRLRSVQHELKKAQTDIVTAEEEYRTTVAAAQRVRASLGEDP-DNTYPSIDIPSMPAEQVSGTPDISAHN--FSSDLDADNVKQPAGYQISPIKLTSNSKEGNGREEDEEKARYQSDLVLRPSPYTPSPTDVYTSVLTGLKAFILRIPNHAKASDRQNFSPLSLTWARKLDPNKALCPQELRGQCSNRKCIYQHLRLPLNPTLHAINVIDSLQQFIPTQTWLSAERKIVAAKLAIYEGKNQSVDDIVLNLISFLCPVSSKIPFAPLIQPKD 876          
BLAST of Ggra7662.t1 vs. uniprot
Match: R7QHZ4 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHZ4_CHOCR)

HSP 1 Score: 166 bits (419), Expect = 1.760e-38
Identity = 116/342 (33.92%), Postives = 190/342 (55.56%), Query Frame = 0
Query:  547 ASKPALWKENSVQKSAVPNHVDAANTRLIDDLRTELEESKKKLDSERDTNRLLQAADVSVAEAYAKMGFKRSRMQSVQDDLRRAQTDLVTAEEEYRATVSAALRVKASLGVDASENNYASIDISAATAEHSTTSQDVDQNTEEVSLGTERNDSRELIRYDPSPLKLGPALKEEGEIIESENEVSHQSDPILRPSPYTPSPTVMYNSVLTGLKAFILRIPKYAKATDRRNLSPLSLSWSSKLNPNKALCPQELRGQ--CSNRKCLYQHLRHPINRRVHAFDVIDVVQTYFPEEAWKSAERNVVAAKLAIYEGKNQNVEDIVFQLISFLCPTSS--KLPFAPLT 884
            A++   W     + S      D     L+DDL+ EL  SKK+L S  D  +L+ A+DVS+A+A AK+ FKR+ + ++ D ++RA+ +++ AE++     +AA R++ SL      + +   +I+    E   T         ++S  T ++D               P   E G+ +    +   ++D +L+ SPY+PS    + S L+GL+A++LR P +++A DR++ SPLSL+W+  L+P K +CP+ELR Q  C+++KC Y+HLR+  + + HA DV D +Q  F + + + AE+ VV AKL IY   N+NV++ V  LI+ L P  S  KLP    T
Sbjct:  563 AAEQGRWNRRDDEDSEAVFDEDYEEPGLVDDLKLELASSKKQLASVTDYVQLVNASDVSLAQASAKLSFKRAALSNLSDLMKRAEFEVLDAEQDLEKITNAARRMRESLVDGPFADMFPMPEIARTGGEGRGTG--ASPGGYDLSSATSQSDGGV------------PTDAENGDKVADGLDALTRTDLVLQASPYSPSSGFFFLSCLSGLRAYVLRTPYHSRAADRKSTSPLSLTWTHNLDPMKTICPKELRRQYSCASKKCQYEHLRNFESMKGHALDVTDRLQG-FADMSKEDAEKQVVRAKLDIYS--NKNVDNTVSFLITSLFPIPSPDKLPLKKRT 887          
The following BLAST results are available for this feature:
BLAST of Ggra7662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IU221.530e-23150.78C3H1-type domain-containing protein n=1 Tax=Gracil... [more]
R7QHZ41.760e-3833.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 425..459
NoneNo IPR availableCOILSCoilCoilcoord: 620..640
NoneNo IPR availableCOILSCoilCoilcoord: 575..602
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..462
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 519..547
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..492
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..565
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 387..428
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..332
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 793..813
e-value: 5.2E-5
score: 22.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 788..814
score: 9.469472

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000206_piloncontigtig00000206_pilon:130947..133970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7662.t1Ggra7662.t1Gracilaria gracilis GNS1m malemRNAtig00000206_pilon 130947..133970 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7662.t1 ID=Ggra7662.t1|Name=Ggra7662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=893bp
MASVEQAEFVDLDDPNDFMRVRQSPSFENRPTYWNQPPNPHPQTQLPPPP
PQLQHGHAFFDVGLSVSHPPQPLAMPIAQSLQLPQPHNMSPPVLPQGNTL
QLHDPPPTLMSLHAPPPDVLAVHHGQPTVLSMHGQPAPFIHLPPQPPSTH
ALRHHAQQPIHPAILQPPRAPLIPRPSYRPNSLQHTPPLPMPHRIPSMHI
HRRPPTPPPPPPPPPPPPPLPSADNPPLRHSSPSPPPPQKKPSLAELRLR
ALQGRRRTNSLNPNASSSSLSAVGSTAPPFPEMSQPLPGAPVVFEFSSSD
EESDVEVDPRPSLERNETPSSTRKKAIEDMKIRVVRLGQCPSMLTKSSDP
KTLSERRREGSPAVSVIHPGQSPSPVPSAPLFSLKSGDTAPVTSFNSCDN
DASQPILQKSDIPNAVQNKPQTPTSKAKLEEIAQLRRQIKQIEHRIAQQK
TGRQKLEQKSDSQSLTKKPPSPQVTTPINPLKRPSNSSKPFGVRTDSEKR
RRYYTGTQLHRPPTPSVIPVVSEATSQPFSPTHGATESTSSSLSDPASKP
ALWKENSVQKSAVPNHVDAANTRLIDDLRTELEESKKKLDSERDTNRLLQ
AADVSVAEAYAKMGFKRSRMQSVQDDLRRAQTDLVTAEEEYRATVSAALR
VKASLGVDASENNYASIDISAATAEHSTTSQDVDQNTEEVSLGTERNDSR
ELIRYDPSPLKLGPALKEEGEIIESENEVSHQSDPILRPSPYTPSPTVMY
NSVLTGLKAFILRIPKYAKATDRRNLSPLSLSWSSKLNPNKALCPQELRG
QCSNRKCLYQHLRHPINRRVHAFDVIDVVQTYFPEEAWKSAERNVVAAKL
AIYEGKNQNVEDIVFQLISFLCPTSSKLPFAPLTQARDNRQT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019607Putative_zinc-finger_domain
IPR000571Znf_CCCH