Ggra7659.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7659.t1
Unique NameGgra7659.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length749
Homology
BLAST of Ggra7659.t1 vs. uniprot
Match: A0A2V3J6S6 (Nuclear pore complex protein NUP88 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6S6_9FLOR)

HSP 1 Score: 820 bits (2118), Expect = 4.180e-289
Identity = 445/757 (58.78%), Postives = 548/757 (72.39%), Query Frame = 0
Query:    1 MHALRAQLRTQRVPPPQQQPQQETDTESAPHILPSLSPTHAAVVSDV--QLYMIPLTPRAAPR--RTPLPFAPTHELVSGPYTALISPTQLAVLHHHSGVCYPVAPALFRRRPALRVLHACWMPSAPAFLIVLTSDFCLRLFDAINEQAAAHERQRVRVVTTAAPPVSFVCGSGPGWHALCVYVLAEDGAVYVAAPIAPIGTTLSIADFRALRRAAKSALCLSAPQTPQSHHTGRRLSFGDAHTPWPLRQARLQLLFLDTVFERSADQMIAVREFKPAPLLFQGPLHVHKERRDEQYVQLLQVSATKQPVLLRVSRRGSVCVLLPMERVEANWFLSTEPPGEGLLLASKEYASCAQSVAPAFLCFERIAFDSPVSITAVAS--HADTFFFATAKAVYSLTFSFLSLLEDALALERCPTSTLRELFTVNSPHASSQARIRAIMSHYVRGDGPVAVVLLADGTLHVTDPLRWHGLQVDLPSLLPDRPFSESQQNLRAYAFRETAENVLHALRHVESLRDQYGRVADGTLGKVSSIKSFASTLPYLEKRVEVLTGNSQQPGIGDSLGNIASLLMEWTQEISDRSESNARDIDKLQTVLTDADRSEQELRLKLNRVTDSIESLKVRVKTVFEGLEAGNAQLSKLELERLAALKQKKHRLSAFRTRVAELSAAMQSRNQRLTSNIGSVRDVNTLFSHNTGTHSWRDSS---RRHGSANGRKGVELGAKELHQIKIALEKHSDKISEAMELSSSLWKRLSLTT 748
            M ALR  LR  R        + E    + P ILP+LSP H  V      QL+ +PL+  +  R  R   PF   H +VSGPY AL S   +AV H  SG  YPVA ALFR RPAL VLHA W+PSAPAFL++LTSD CLR+FD ++ +AA   RQRV VVT  + PVSFVCG+G GWHALCVYVLAEDGA+YVAAP+APIGTT+++A+FR LR AA   L   A  +PQ     RRLSFGD+  PW +RQARLQL FLDTVFE++A QMIAVREFKPAPLLFQGPLHV  E   E+  QLL +S +  PVLLRVS  G V VLL MER +A WFLS++P  +GLLLAS++YA CA+SVAPA LCFE+  FD+PV++  VAS  +ADT+F AT  AVYSLT SFLSLL+D LALER P STLR+LFTV +P  SS  RI    SHYVRGDGPVA++ L+DGT H TDPLRWH +  D+P+LLP     ES  + RAYA +  AE+V+HALRHVE+LR Q GRVADGTLG VSS++S ASTL +LEKRV VLTG   QPGIGDSLGN+A+LL++WT E+S R++++   + +LQ  +++ DRSE+EL+ KL R  +  + LK RV+TVFE +E G+ QLSK E+ERLA L+QKK R++AFRTR  EL+AA++ RN+RL + +  VR     FS  +G  SWRDSS   RR      ++ +E G+KEL QIK+ALEKHS++IS+AMELSSSLWKRLS+TT
Sbjct:    1 MQALRTHLRALRAVC-----ESEEAVNNTPRILPALSPAHITVPDPDARQLHQLPLSKLSTARSIRATRPFR--HAIVSGPYLALYSDRSVAVHHVPSGRSYPVAEALFRDRPALSVLHAQWLPSAPAFLVLLTSDCCLRVFDVVSPEAAETARQRVHVVTAGSAPVSFVCGAGSGWHALCVYVLAEDGALYVAAPLAPIGTTINLAEFRQLRDAAMFVLEQHAADSPQQKDMKRRLSFGDSDLPWSVRQARLQLRFLDTVFEQNAQQMIAVREFKPAPLLFQGPLHVENEVPTEKCTQLLLLSTSSHPVLLRVSEHGRVSVLLAMERFDAQWFLSSQPMEQGLLLASEQYADCARSVAPALLCFEQFVFDAPVALVPVASLSYADTYFLATRSAVYSLTLSFLSLLDDELALERSPRSTLRQLFTVKTPGDSSALRISGFTSHYVRGDGPVAILHLSDGTFHTTDPLRWHTVYHDVPNLLPLNLLVESHSSSRAYACKSLAESVVHALRHVENLRGQNGRVADGTLGTVSSLQSLASTLAFLEKRVIVLTGGDDQPGIGDSLGNVATLLLQWTDELSQRAKNDISKVSELQQAISEGDRSEEELQAKLKRAQEGADQLKSRVRTVFEAIERGSLQLSKAEVERLATLRQKKRRIAAFRTRTVELAAAIRKRNERLANMLREVRQKEDWFSSTSGVQSWRDSSPFARRRERPAEQRALEFGSKELQQIKVALEKHSEQISDAMELSSSLWKRLSITT 750          
BLAST of Ggra7659.t1 vs. uniprot
Match: R7QRF4 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRF4_CHOCR)

HSP 1 Score: 297 bits (760), Expect = 3.350e-88
Identity = 200/544 (36.76%), Postives = 300/544 (55.15%), Query Frame = 0
Query:  265 MIAVREFKPAPLLFQGPLHVHKERRDEQY-------------VQLLQVSATKQPVLLRVSRRGSVCVLLPMERVEANWFLSTEP---PGEGLLLASKEYASCAQSVAPAFLCFERIAFDSPVSITAVA--SHADTFFFATAKAVYSLTFSFLSLLEDALALERCPTSTLRELFTVNSPHASS-----QARIRAIMSHYVRGDGPVAVVLLADGTLHVTDPLRW-HGLQVDLPSLL--PDRPFSESQQNLR------AYAFRETAENVLHALRHVESLRDQYG-RVADGTLGKVSSIKSFASTLPYLEKRVEVLTGNSQQPGIGDSLGNIASLLMEWTQEISDRSESNARDIDKLQTVLTDADRSEQELRLKLNRVTDSIESLKVRVKTVFEGLEAGNAQLSKLELERLAALKQKKHRLSAFRTRVAELSAAMQSRN---------------QRLTSNIGSVRDVNTLFS---HNTGTHSWRDSS--RRHGSANGRKGVE---------LGAKELHQIKIALEKHSDKISEAMELSSSLWKRLSL 746
            M+AVREFKPAPLLFQGPL+   E  D+               ++LL+  A + PVLLR +R G V VL+ ME VEA WF++++P     E LL  +++YA CA++VAP+ LCFE   FD PV +  V   + AD  +  T   V+S+  SF+S L DA  LE  P S + ++ +V  P  ++     +  +  +   + RG+GPVA+VL ++GTLH +DPL W +  +   P  L  P+     +  N R      A+AF ++ + ++  L  +++L+   G RV  GTLG V ++ S +S L YL KRVEV TG    PGIGDS  ++ ++L +W+ ++  RS  +  D+DKLQT L+D +RS   L+ K  RV +    L+ R++ + + ++ G++ LS +E  R   LK+KKHRL++ R R++EL +A Q+R                Q   S  G+    N L S    +T +  W  S   R  GS   ++G E         L  +E+  IK  LEKHS  I +AM+LS+ LW+RLS+
Sbjct:    1 MVAVREFKPAPLLFQGPLYTEHEDLDDASHPVDASNESSFVSLKLLRCGANRPPVLLRATRGGDVSVLIGMENVEAQWFITSDPHSTSSEELLETNEDYAECARTVAPSLLCFEHFRFDMPVKLVPVGQKTDADALYAVTRYTVFSVRLSFISALADAATLESTPRSLVSQILSVWKPGLATDRPEKEHTVLGLTPFFARGEGPVALVLCSNGTLHASDPLTWMNDFEKVCPGSLLGPELDSEVTWGNSRPFTGRAAFAFPDSGKEMMEILHRIQTLQGTSGGRVTAGTLGVVGNVHSQSSVLEYLRKRVEVCTGGLDGPGIGDSCSSLNTVLGDWSVDLQTRSRLHIDDVDKLQTALSDIERSGIILQGKCLRVEEGNIMLRERIRVLMKKIQQGSSHLSPVERARYTKLKEKKHRLASLRNRISELESASQARKAPVWRDGEGVLSTPRQGFQSPYGTSITSNKLQSPSRSSTRSKRWSASPSWRSKGSPTMQRGAEFSPTSDQTDLTREEVKMIKETLEKHSKDIGDAMDLSTKLWQRLSV 544          
The following BLAST results are available for this feature:
BLAST of Ggra7659.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6S64.180e-28958.78Nuclear pore complex protein NUP88 n=1 Tax=Gracila... [more]
R7QRF43.350e-8836.76Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 596..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..708
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 692..708
IPR037700Nucleoporin NUP88/NUP82PANTHERPTHR13257NUCLEOPORIN NUP84-RELATEDcoord: 580..733
coord: 95..429

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000206_piloncontigtig00000206_pilon:124240..126486 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7659.t1Ggra7659.t1Gracilaria gracilis GNS1m malemRNAtig00000206_pilon 124240..126486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7659.t1 ID=Ggra7659.t1|Name=Ggra7659.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=749bp
MHALRAQLRTQRVPPPQQQPQQETDTESAPHILPSLSPTHAAVVSDVQLY
MIPLTPRAAPRRTPLPFAPTHELVSGPYTALISPTQLAVLHHHSGVCYPV
APALFRRRPALRVLHACWMPSAPAFLIVLTSDFCLRLFDAINEQAAAHER
QRVRVVTTAAPPVSFVCGSGPGWHALCVYVLAEDGAVYVAAPIAPIGTTL
SIADFRALRRAAKSALCLSAPQTPQSHHTGRRLSFGDAHTPWPLRQARLQ
LLFLDTVFERSADQMIAVREFKPAPLLFQGPLHVHKERRDEQYVQLLQVS
ATKQPVLLRVSRRGSVCVLLPMERVEANWFLSTEPPGEGLLLASKEYASC
AQSVAPAFLCFERIAFDSPVSITAVASHADTFFFATAKAVYSLTFSFLSL
LEDALALERCPTSTLRELFTVNSPHASSQARIRAIMSHYVRGDGPVAVVL
LADGTLHVTDPLRWHGLQVDLPSLLPDRPFSESQQNLRAYAFRETAENVL
HALRHVESLRDQYGRVADGTLGKVSSIKSFASTLPYLEKRVEVLTGNSQQ
PGIGDSLGNIASLLMEWTQEISDRSESNARDIDKLQTVLTDADRSEQELR
LKLNRVTDSIESLKVRVKTVFEGLEAGNAQLSKLELERLAALKQKKHRLS
AFRTRVAELSAAMQSRNQRLTSNIGSVRDVNTLFSHNTGTHSWRDSSRRH
GSANGRKGVELGAKELHQIKIALEKHSDKISEAMELSSSLWKRLSLTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037700NUP88/NUP82