Ggra7654.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7654.t1
Unique NameGgra7654.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Homology
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BLAST of Ggra7654.t1 vs. uniprot
Match: A0A2V3IHP6 (Metalloproteinase inhibitor 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHP6_9FLOR)

HSP 1 Score: 139 bits (349), Expect = 2.000e-38
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = 0 
Query:   10 IGSVLVAQSLSCSCIAQTLERAYCSATTSFRATILTRFDNCAARRCHAQKDRENGRLTYIANVTQLMKGSMPEDGIAYLETSIDANQCGSNSLLDNEEYLFTLNS-QLSDDFRCPSSVFLVSSCEFIQSWHSLSSDAKQFIADNVRTGNKLCG 161
            I ++L+  SL CSC   + E++YC ++TSFRAT+L   DNC  + CH   D+  G +TYI  V+++ +G+MPED +AY+ T +++  CG  +L    EY+F L    +S  F+CPS  F +  C+ I+ W SL+  AKQFIADNV  G KLCG
Sbjct:    9 ITALLLVSSLGCSCFPVSFEKSYCDSSTSFRATVLAETDNCVGK-CHPIDDQMEGAITYILKVSEVFRGTMPEDEVAYMRTPVNSGLCGI-TLGVGTEYVFNLPYIAMSAPFQCPSEYFSIGLCDSIEEWESLADGAKQFIADNVNNGQKLCG 159
The following BLAST results are available for this feature:
BLAST of Ggra7654.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHP62.000e-3844.44Metalloproteinase inhibitor 4 n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001820Protease inhibitor I35 (TIMP)PFAMPF00965TIMPcoord: 20..150
e-value: 1.3E-9
score: 38.1
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldGENE3D2.40.50.120coord: 21..157
e-value: 1.8E-14
score: 55.6
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 21..156
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..23
score: 6.0
IPR001134Netrin domainPROSITEPS50189NTRcoord: 21..160
score: 9.953226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000206_piloncontigtig00000206_pilon:88087..88614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7654.t1Ggra7654.t1Gracilaria gracilis GNS1m malemRNAtig00000206_pilon 88087..88614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7654.t1 ID=Ggra7654.t1|Name=Ggra7654.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MKRLLLLLCIGSVLVAQSLSCSCIAQTLERAYCSATTSFRATILTRFDNC
AARRCHAQKDRENGRLTYIANVTQLMKGSMPEDGIAYLETSIDANQCGSN
SLLDNEEYLFTLNSQLSDDFRCPSSVFLVSSCEFIQSWHSLSSDAKQFIA
DNVRTGNKLCGDPFATSEASPTPTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001820TIMP
IPR008993TIMP-like_OB-fold
IPR001134Netrin_domain